Wall clock time and date at job start Fri Apr 10 2020 18:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.46860 * 124.34901 * 90.00573 * 11 10 9 13 13 C 1.54267 * 105.46324 * 196.81951 * 12 11 10 14 14 C 1.54515 * 101.91904 * 334.77706 * 13 12 11 15 15 C 1.34381 * 124.34791 * 269.69937 * 11 10 9 16 16 O 1.21281 * 124.94369 * 359.67449 * 15 11 10 17 17 C 1.54304 * 108.65640 * 89.09368 * 13 12 11 18 18 O 1.40391 * 108.80419 * 48.44488 * 17 13 12 19 19 C 1.44197 * 117.19683 * 92.90219 * 18 17 13 20 20 C 1.53823 * 112.86100 * 317.87246 * 19 18 17 21 21 N 1.44350 * 112.19667 * 318.42702 * 20 19 18 22 22 C 1.46905 * 111.00091 * 215.87130 * 21 20 19 23 23 C 1.50702 * 109.46845 * 66.99012 * 22 21 20 24 24 N 1.34779 * 119.99799 * 180.02562 * 23 22 21 25 25 O 1.21278 * 119.99984 * 359.97438 * 23 22 21 26 26 C 1.46535 * 112.89873 * 213.76509 * 13 12 11 27 27 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 29 29 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 30 30 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 31 31 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 32 32 H 1.09001 * 110.24565 * 315.81581 * 12 11 10 33 33 H 1.08996 * 110.24853 * 77.73258 * 12 11 10 34 34 H 1.09004 * 110.49593 * 143.30777 * 14 13 12 35 35 H 1.09004 * 110.49156 * 265.83528 * 14 13 12 36 36 H 1.09001 * 109.58109 * 168.23684 * 17 13 12 37 37 H 1.08999 * 109.58465 * 288.64122 * 17 13 12 38 38 H 1.08993 * 108.80245 * 196.99645 * 19 18 17 39 39 H 1.09005 * 108.71046 * 78.68287 * 19 18 17 40 40 H 1.09003 * 108.93767 * 197.72691 * 20 19 18 41 41 H 1.09004 * 108.86764 * 79.08411 * 20 19 18 42 42 H 1.09005 * 109.47084 * 186.98599 * 22 21 20 43 43 H 1.08993 * 109.47321 * 306.98770 * 22 21 20 44 44 H 0.97000 * 120.00056 * 359.97438 * 24 23 22 45 45 H 0.97004 * 119.99821 * 179.97438 * 24 23 22 46 46 H 1.09000 * 108.90901 * 58.54283 * 26 13 12 47 47 H 1.08999 * 108.91092 * 177.07265 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 7 1.5130 -4.9307 0.0155 12 6 1.0991 -5.6534 -1.1940 13 6 0.0228 -6.6550 -0.7267 14 6 0.3933 -6.8507 0.7606 15 6 1.1388 -5.5856 1.1277 16 8 1.3630 -5.2153 2.2606 17 6 -1.3564 -5.9668 -0.7986 18 8 -1.4878 -5.3465 -2.0512 19 6 -2.1194 -6.1077 -3.1005 20 6 -1.6599 -7.5753 -3.1337 21 7 -0.2385 -7.7067 -2.9188 22 6 0.3169 -8.8016 -3.7257 23 6 0.2271 -8.4442 -5.1869 24 7 0.6791 -9.3051 -6.1202 25 8 -0.2528 -7.3824 -5.5231 26 6 0.0457 -7.9104 -1.4822 27 1 -0.4850 0.8400 0.0004 28 1 0.6245 -2.5529 0.8956 29 1 0.6244 -2.5609 -0.8844 30 1 2.8721 -3.6081 -0.8798 31 1 2.8721 -3.6002 0.9002 32 1 0.6783 -4.9601 -1.9223 33 1 1.9478 -6.1838 -1.6256 34 1 -0.5061 -6.9564 1.3673 35 1 1.0387 -7.7207 0.8818 36 1 -2.1430 -6.7113 -0.6753 37 1 -1.4326 -5.2180 -0.0102 38 1 -1.8863 -5.6447 -4.0593 39 1 -3.1988 -6.0807 -2.9510 40 1 -1.9120 -8.0031 -4.1040 41 1 -2.1878 -8.1276 -2.3562 42 1 1.3606 -8.9599 -3.4539 43 1 -0.2495 -9.7139 -3.5392 44 1 1.0626 -10.1546 -5.8513 45 1 0.6209 -9.0753 -7.0608 46 1 1.0298 -8.3674 -1.3780 47 1 -0.7015 -8.5865 -1.0666 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274061124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:59 Heat of formation + Delta-G solvation = -96.579598 kcal Electronic energy + Delta-G solvation = -29429.200686 eV Core-core repulsion = 25419.473608 eV Total energy + Delta-G solvation = -4009.727078 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03926 -39.84306 -38.48422 -36.24068 -35.87073 -34.23557 -33.98415 -32.55843 -30.16976 -29.71777 -28.21953 -26.65284 -26.27475 -25.20931 -23.84646 -21.69154 -21.19416 -20.55395 -19.73334 -18.79757 -17.77095 -17.17644 -16.66194 -16.56280 -16.21340 -15.91730 -15.63123 -15.28395 -14.95892 -14.74043 -14.47147 -14.27667 -14.13100 -14.04326 -13.62881 -13.13645 -13.00224 -12.74260 -12.53622 -12.33609 -12.12745 -11.92835 -11.71009 -11.39825 -11.17046 -11.12827 -10.95117 -10.82079 -10.60369 -10.36419 -10.18347 -9.99882 -9.82800 -9.72571 -9.29768 -9.27486 -9.00348 -8.62642 -8.23757 -7.83200 -5.88803 -3.91992 2.35033 2.88550 3.15444 3.41845 3.45276 3.47833 3.50839 3.77266 4.07792 4.43290 4.45116 4.56256 4.57618 4.62604 4.70501 4.82218 4.84737 4.95386 5.09360 5.23176 5.30897 5.32585 5.41861 5.46800 5.55201 5.62677 5.72283 5.80147 5.93676 6.04649 6.21797 6.22401 6.39218 6.42578 6.57749 6.61460 6.75212 6.98486 6.99618 7.16647 7.59534 7.71516 7.81944 7.97326 8.03978 8.12805 8.47819 8.81220 9.14675 9.70972 11.22432 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.013858 B = 0.003458 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.937752 B = 8094.923685 C = 8911.031022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.014 3.986 10 C 0.128 3.872 11 N -0.606 5.606 12 C 0.129 3.871 13 C -0.101 4.101 14 C -0.142 4.142 15 C 0.510 3.490 16 O -0.541 6.541 17 C 0.082 3.918 18 O -0.361 6.361 19 C 0.074 3.926 20 C 0.030 3.970 21 N -0.510 5.510 22 C 0.037 3.963 23 C 0.513 3.487 24 N -0.861 5.861 25 O -0.514 6.514 26 C 0.080 3.920 27 H 0.260 0.740 28 H 0.019 0.981 29 H 0.022 0.978 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.047 0.953 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.048 0.952 40 H 0.079 0.921 41 H 0.037 0.963 42 H 0.108 0.892 43 H 0.064 0.936 44 H 0.399 0.601 45 H 0.402 0.598 46 H 0.078 0.922 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.414 -27.050 -10.552 29.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.024 4.024 10 C 0.008 3.992 11 N -0.338 5.338 12 C 0.006 3.994 13 C -0.103 4.103 14 C -0.183 4.183 15 C 0.296 3.704 16 O -0.419 6.419 17 C 0.005 3.995 18 O -0.278 6.278 19 C -0.003 4.003 20 C -0.098 4.098 21 N -0.234 5.234 22 C -0.094 4.094 23 C 0.296 3.704 24 N -0.427 5.427 25 O -0.388 6.388 26 C -0.048 4.048 27 H 0.070 0.930 28 H 0.037 0.963 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.055 0.945 42 H 0.126 0.874 43 H 0.081 0.919 44 H 0.227 0.773 45 H 0.233 0.767 46 H 0.097 0.903 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.473 -25.271 -10.189 27.359 hybrid contribution 0.140 -0.550 -0.124 0.581 sum -2.333 -25.821 -10.313 27.902 Atomic orbital electron populations 1.69973 1.06027 1.26604 1.50355 1.24985 0.94824 0.99147 0.95259 0.86646 0.79552 0.83146 0.78555 1.20230 1.21331 1.20268 1.21062 0.92922 0.90840 1.51235 0.92675 1.19379 0.94376 0.90777 0.97886 1.21773 0.95096 0.81212 1.01082 1.48599 1.55768 1.23074 1.06391 1.21884 0.95059 0.94321 0.88160 1.21013 0.98837 0.96130 0.94290 1.22369 1.02076 0.98466 0.95422 1.20576 0.79669 0.85251 0.84886 1.90705 1.58196 1.71554 1.21432 1.22404 0.93001 0.97101 0.87042 1.87607 1.80487 1.40846 1.18860 1.22978 0.94730 0.90524 0.92077 1.22478 0.87415 0.98575 1.01367 1.60858 1.14242 1.42230 1.06057 1.22015 1.02642 0.93550 0.91184 1.20553 0.77484 0.84055 0.88284 1.43882 1.66464 1.22200 1.10112 1.90803 1.42988 1.22832 1.82176 1.20967 1.01796 0.95747 0.86252 0.92994 0.96301 0.95958 0.91768 0.91370 0.88174 0.92141 0.88356 0.88366 0.93501 0.89069 0.88465 0.93391 0.90288 0.94483 0.87440 0.91856 0.77306 0.76698 0.90319 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.07 13.29 55.43 0.74 -27.34 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.89 22.58 29.54 -169.99 -5.02 17.56 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.52 -15.50 9.11 -34.44 -0.31 -15.81 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.01 0.38 5.30 -27.88 -0.15 0.23 16 10 C 0.13 2.91 5.88 -4.04 -0.02 2.89 16 11 N -0.61 -11.70 2.93 -172.45 -0.51 -12.20 16 12 C 0.13 2.02 6.11 -3.18 -0.02 2.00 16 13 C -0.10 -1.23 0.63 -155.45 -0.10 -1.33 16 14 C -0.14 -1.80 5.78 -26.77 -0.15 -1.96 16 15 C 0.51 9.72 7.88 -10.84 -0.09 9.63 16 16 O -0.54 -12.72 17.59 5.56 0.10 -12.62 16 17 C 0.08 1.13 5.15 37.84 0.19 1.33 16 18 O -0.36 -5.75 8.72 -33.83 -0.30 -6.05 16 19 C 0.07 0.93 7.02 37.59 0.26 1.19 16 20 C 0.03 0.30 4.31 -4.76 -0.02 0.28 16 21 N -0.51 -4.89 3.94 -240.67 -0.95 -5.83 16 22 C 0.04 0.24 5.32 -4.97 -0.03 0.21 16 23 C 0.51 4.24 7.46 -10.98 -0.08 4.16 16 24 N -0.86 -3.64 8.87 31.22 0.28 -3.37 16 25 O -0.51 -6.84 15.77 5.56 0.09 -6.76 16 26 C 0.08 0.69 3.74 -6.38 -0.02 0.67 16 27 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.07 1.60 7.92 -51.93 -0.41 1.19 16 32 H 0.10 1.86 6.65 -51.93 -0.35 1.52 16 33 H 0.06 0.84 7.96 -51.93 -0.41 0.43 16 34 H 0.10 1.14 7.85 -51.93 -0.41 0.73 16 35 H 0.10 0.98 7.94 -51.93 -0.41 0.57 16 36 H 0.05 0.52 7.17 -51.93 -0.37 0.14 16 37 H 0.09 1.49 7.84 -51.93 -0.41 1.08 16 38 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.75 6.19 -51.93 -0.32 0.43 16 41 H 0.04 0.31 6.73 -51.93 -0.35 -0.04 16 42 H 0.11 0.49 7.80 -51.93 -0.40 0.09 16 43 H 0.06 0.25 8.11 -51.93 -0.42 -0.17 16 44 H 0.40 0.38 8.83 -40.82 -0.36 0.02 16 45 H 0.40 1.59 8.93 -40.82 -0.36 1.22 16 46 H 0.08 0.55 7.61 -51.93 -0.39 0.16 16 47 H 0.05 0.33 7.40 -51.93 -0.38 -0.05 16 LS Contribution 372.78 15.07 5.62 5.62 Total: -1.00 -39.25 372.78 -8.01 -47.26 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -7.42 Total: -1.44 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -0.63 Total: 5.17 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.44 Total: -48.74 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.11 Total: -25.43 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -39.25 -8.01 -47.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274061124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.317 kcal (2) G-P(sol) polarization free energy of solvation -39.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds