Wall clock time and date at job start Fri Apr 10 2020 18:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.46860 * 124.34901 * 90.00573 * 11 10 9 13 13 C 1.54267 * 105.46324 * 196.81951 * 12 11 10 14 14 C 1.54515 * 101.91904 * 334.77706 * 13 12 11 15 15 C 1.34381 * 124.34791 * 269.69937 * 11 10 9 16 16 O 1.21281 * 124.94369 * 359.67449 * 15 11 10 17 17 C 1.54304 * 108.65640 * 89.09368 * 13 12 11 18 18 O 1.40391 * 108.80419 * 48.44488 * 17 13 12 19 19 C 1.44197 * 117.19683 * 92.90219 * 18 17 13 20 20 C 1.53823 * 112.86100 * 317.87246 * 19 18 17 21 21 N 1.44350 * 112.19667 * 318.42702 * 20 19 18 22 22 C 1.46905 * 111.00091 * 215.87130 * 21 20 19 23 23 C 1.50702 * 109.46845 * 66.99012 * 22 21 20 24 24 N 1.34779 * 119.99799 * 180.02562 * 23 22 21 25 25 O 1.21278 * 119.99984 * 359.97438 * 23 22 21 26 26 C 1.46535 * 112.89873 * 213.76509 * 13 12 11 27 27 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 29 29 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 30 30 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 31 31 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 32 32 H 1.09001 * 110.24565 * 315.81581 * 12 11 10 33 33 H 1.08996 * 110.24853 * 77.73258 * 12 11 10 34 34 H 1.09004 * 110.49593 * 143.30777 * 14 13 12 35 35 H 1.09004 * 110.49156 * 265.83528 * 14 13 12 36 36 H 1.09001 * 109.58109 * 168.23684 * 17 13 12 37 37 H 1.08999 * 109.58465 * 288.64122 * 17 13 12 38 38 H 1.08993 * 108.80245 * 196.99645 * 19 18 17 39 39 H 1.09005 * 108.71046 * 78.68287 * 19 18 17 40 40 H 1.09003 * 108.93767 * 197.72691 * 20 19 18 41 41 H 1.09004 * 108.86764 * 79.08411 * 20 19 18 42 42 H 1.09005 * 109.47084 * 186.98599 * 22 21 20 43 43 H 1.08993 * 109.47321 * 306.98770 * 22 21 20 44 44 H 0.97000 * 120.00056 * 359.97438 * 24 23 22 45 45 H 0.97004 * 119.99821 * 179.97438 * 24 23 22 46 46 H 1.09000 * 108.90901 * 58.54283 * 26 13 12 47 47 H 1.08999 * 108.91092 * 177.07265 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 7 1.5130 -4.9307 0.0155 12 6 1.0991 -5.6534 -1.1940 13 6 0.0228 -6.6550 -0.7267 14 6 0.3933 -6.8507 0.7606 15 6 1.1388 -5.5856 1.1277 16 8 1.3630 -5.2153 2.2606 17 6 -1.3564 -5.9668 -0.7986 18 8 -1.4878 -5.3465 -2.0512 19 6 -2.1194 -6.1077 -3.1005 20 6 -1.6599 -7.5753 -3.1337 21 7 -0.2385 -7.7067 -2.9188 22 6 0.3169 -8.8016 -3.7257 23 6 0.2271 -8.4442 -5.1869 24 7 0.6791 -9.3051 -6.1202 25 8 -0.2528 -7.3824 -5.5231 26 6 0.0457 -7.9104 -1.4822 27 1 -0.4850 0.8400 0.0004 28 1 0.6245 -2.5529 0.8956 29 1 0.6244 -2.5609 -0.8844 30 1 2.8721 -3.6081 -0.8798 31 1 2.8721 -3.6002 0.9002 32 1 0.6783 -4.9601 -1.9223 33 1 1.9478 -6.1838 -1.6256 34 1 -0.5061 -6.9564 1.3673 35 1 1.0387 -7.7207 0.8818 36 1 -2.1430 -6.7113 -0.6753 37 1 -1.4326 -5.2180 -0.0102 38 1 -1.8863 -5.6447 -4.0593 39 1 -3.1988 -6.0807 -2.9510 40 1 -1.9120 -8.0031 -4.1040 41 1 -2.1878 -8.1276 -2.3562 42 1 1.3606 -8.9599 -3.4539 43 1 -0.2495 -9.7139 -3.5392 44 1 1.0626 -10.1546 -5.8513 45 1 0.6209 -9.0753 -7.0608 46 1 1.0298 -8.3674 -1.3780 47 1 -0.7015 -8.5865 -1.0666 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274061124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:58 Heat of formation + Delta-G solvation = -130.592748 kcal Electronic energy + Delta-G solvation = -29430.675607 eV Core-core repulsion = 25419.473608 eV Total energy + Delta-G solvation = -4011.201999 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.13248 -40.66819 -39.58714 -37.38063 -37.06346 -35.99888 -34.51962 -34.47356 -31.79381 -30.66323 -29.36281 -27.69266 -27.52604 -26.68953 -25.23318 -23.21676 -22.42646 -21.16036 -20.76746 -20.30212 -18.69240 -18.29617 -17.83461 -17.57584 -17.32780 -17.15348 -16.87467 -16.56940 -16.25487 -15.96633 -15.84358 -15.36202 -15.09346 -14.95374 -14.73062 -14.54254 -14.35072 -14.11708 -13.97049 -13.83361 -13.21998 -13.18372 -12.99417 -12.83327 -12.65184 -12.50260 -12.29967 -12.06816 -11.97848 -11.89527 -11.73466 -11.43349 -11.36970 -10.89212 -10.70786 -10.58987 -10.50746 -10.33411 -9.51243 -9.20043 -8.22404 -6.36593 1.37092 1.42748 1.50095 1.65201 1.80578 2.21918 2.36705 2.43694 2.84945 3.10009 3.21216 3.42597 3.52329 3.65474 3.88817 4.02709 4.07650 4.22172 4.29643 4.32258 4.40312 4.50409 4.51240 4.53363 4.63010 4.66476 4.71539 4.73611 4.77991 4.82307 4.86709 4.89750 5.01465 5.16230 5.21227 5.34376 5.48229 5.60852 5.83504 5.95829 6.08111 6.12607 6.15416 6.39351 6.59341 6.65218 6.78811 7.26598 7.33215 7.52561 8.89703 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.013858 B = 0.003458 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.937752 B = 8094.923685 C = 8911.031022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.974 3.026 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.067 0.933 9 C 0.030 3.970 10 C 0.142 3.858 11 N -0.615 5.615 12 C 0.128 3.872 13 C -0.081 4.081 14 C -0.122 4.122 15 C 0.494 3.506 16 O -0.596 6.596 17 C 0.078 3.922 18 O -0.400 6.400 19 C 0.069 3.931 20 C 0.042 3.958 21 N -0.540 5.540 22 C 0.041 3.959 23 C 0.505 3.495 24 N -0.842 5.842 25 O -0.578 6.578 26 C 0.080 3.920 27 H 0.264 0.736 28 H -0.028 1.028 29 H -0.009 1.009 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.144 0.856 36 H 0.082 0.918 37 H 0.048 0.952 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.132 0.868 43 H 0.100 0.900 44 H 0.418 0.582 45 H 0.404 0.596 46 H 0.110 0.890 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.181 -30.525 -11.015 32.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.797 3.203 4 H -0.185 1.185 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.587 4.587 8 H 0.085 0.915 9 C -0.008 4.008 10 C 0.020 3.980 11 N -0.346 5.346 12 C 0.006 3.994 13 C -0.082 4.082 14 C -0.162 4.162 15 C 0.283 3.717 16 O -0.478 6.478 17 C 0.001 3.999 18 O -0.319 6.319 19 C -0.007 4.007 20 C -0.087 4.087 21 N -0.265 5.265 22 C -0.089 4.089 23 C 0.290 3.710 24 N -0.407 5.407 25 O -0.457 6.457 26 C -0.047 4.047 27 H 0.073 0.927 28 H -0.010 1.010 29 H 0.009 0.991 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.134 0.866 35 H 0.162 0.838 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.150 0.850 43 H 0.118 0.882 44 H 0.249 0.751 45 H 0.234 0.766 46 H 0.128 0.872 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.216 -28.848 -10.696 30.791 hybrid contribution -0.285 0.556 -0.058 0.627 sum -1.501 -28.292 -10.753 30.304 Atomic orbital electron populations 1.70142 1.08117 1.27938 1.51021 1.26088 0.95814 1.03782 0.94294 0.85380 0.78175 0.77348 0.79391 1.18517 1.20690 1.19130 1.21539 0.93741 0.91864 1.51527 0.91455 1.19126 0.94400 0.93275 0.93994 1.21304 0.93919 0.81527 1.01276 1.48698 1.55452 1.22028 1.08421 1.22034 0.97101 0.94242 0.86001 1.21007 0.95938 0.96795 0.94470 1.22361 1.02510 0.95884 0.95475 1.21796 0.78995 0.87100 0.83775 1.90662 1.60174 1.73471 1.23490 1.22432 0.95537 0.96747 0.85220 1.87558 1.81123 1.43019 1.20172 1.23064 0.95259 0.92557 0.89858 1.22298 0.88272 0.95877 1.02248 1.60627 1.14051 1.44762 1.07018 1.22122 1.04408 0.93517 0.88836 1.21105 0.76606 0.83460 0.89819 1.43755 1.64867 1.22321 1.09790 1.90796 1.46097 1.25572 1.83203 1.20989 1.04748 0.93598 0.85373 0.92736 1.00991 0.99076 0.90003 0.92479 0.91961 0.89479 0.86649 0.83817 0.90016 0.93332 0.91329 0.92322 0.90241 0.92013 0.84973 0.88206 0.75082 0.76556 0.87219 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -61.37 13.29 21.45 0.28 -61.08 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.97 47.13 29.54 68.60 2.03 49.16 16 4 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.55 -33.88 9.11 25.60 0.23 -33.64 16 8 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 9 C 0.03 1.79 5.30 29.85 0.16 1.95 16 10 C 0.14 6.75 5.88 86.38 0.51 7.25 16 11 N -0.61 -24.42 2.93 -818.12 -2.40 -26.82 16 12 C 0.13 3.97 6.11 86.74 0.53 4.50 16 13 C -0.08 -1.77 0.63 -52.79 -0.03 -1.81 16 14 C -0.12 -2.73 5.78 30.57 0.18 -2.55 16 15 C 0.49 18.99 7.88 87.93 0.69 19.68 16 16 O -0.60 -29.04 17.59 -3.03 -0.05 -29.09 16 17 C 0.08 2.14 5.15 72.42 0.37 2.51 16 18 O -0.40 -13.46 8.72 -143.97 -1.26 -14.71 16 19 C 0.07 1.78 7.02 72.26 0.51 2.29 16 20 C 0.04 0.72 4.31 87.06 0.38 1.10 16 21 N -0.54 -8.55 3.94 -915.34 -3.60 -12.15 16 22 C 0.04 0.33 5.32 85.56 0.46 0.79 16 23 C 0.51 7.25 7.46 87.66 0.65 7.91 16 24 N -0.84 -4.92 8.87 -173.53 -1.54 -6.46 16 25 O -0.58 -15.40 15.77 -3.02 -0.05 -15.45 16 26 C 0.08 0.97 3.74 84.12 0.31 1.29 16 27 H 0.26 16.25 8.31 -92.71 -0.77 15.47 16 28 H -0.03 -1.93 8.14 -2.39 -0.02 -1.95 16 29 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 30 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 31 H 0.06 2.82 7.92 -2.38 -0.02 2.80 16 32 H 0.06 2.45 6.65 -2.39 -0.02 2.43 16 33 H 0.09 2.23 7.96 -2.39 -0.02 2.22 16 34 H 0.12 2.30 7.85 -2.39 -0.02 2.28 16 35 H 0.14 2.03 7.94 -2.38 -0.02 2.01 16 36 H 0.08 1.61 7.17 -2.39 -0.02 1.59 16 37 H 0.05 1.70 7.84 -2.39 -0.02 1.69 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.08 1.37 6.19 -2.39 -0.01 1.35 16 41 H 0.06 0.75 6.73 -2.38 -0.02 0.73 16 42 H 0.13 0.44 7.80 -2.38 -0.02 0.43 16 43 H 0.10 0.15 8.11 -2.39 -0.02 0.13 16 44 H 0.42 -0.77 8.83 -92.71 -0.82 -1.59 16 45 H 0.40 2.50 8.93 -92.71 -0.83 1.67 16 46 H 0.11 0.76 7.61 -2.39 -0.02 0.74 16 47 H 0.08 0.55 7.40 -2.39 -0.02 0.53 16 Total: -1.00 -95.87 372.78 -1.83 -97.70 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -0.65 Total: 7.29 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 5.41 Total: 11.62 kcal Atomic # 7 Polarization: -99.26 SS G_CDS: -7.26 Total: -106.51 kcal Atomic # 8 Polarization: -57.90 SS G_CDS: -1.36 Total: -59.25 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -95.87 -1.83 -97.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274061124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.895 kcal (2) G-P(sol) polarization free energy of solvation -95.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds