Wall clock time and date at job start Fri Apr 10 2020 18:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50702 * 109.46798 * 2 1 4 4 O 1.21280 * 120.00160 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99875 * 179.97438 * 3 2 1 6 6 C 1.47082 * 125.62678 * 359.97438 * 5 3 2 7 7 C 1.54458 * 107.29158 * 181.02041 * 6 5 3 8 8 C 1.54376 * 102.88447 * 21.50429 * 7 6 5 9 9 C 1.47564 * 125.63091 * 180.02562 * 5 3 2 10 10 C 1.52168 * 110.49454 * 207.51285 * 8 7 6 11 11 N 1.47161 * 109.40735 * 290.76830 * 10 8 7 12 12 C 1.46901 * 110.99988 * 179.22183 * 11 10 8 13 13 C 1.50693 * 109.47309 * 293.65151 * 12 11 10 14 14 O 1.21296 * 120.00242 * 353.71692 * 13 12 11 15 15 N 1.34774 * 120.00231 * 173.71442 * 13 12 11 16 16 C 1.37097 * 120.00162 * 180.02562 * 15 13 12 17 17 H 1.07993 * 120.00375 * 359.97438 * 16 15 13 18 18 C 1.38958 * 119.99930 * 180.02562 * 16 15 13 19 19 N 1.31409 * 119.99955 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 119.99934 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47659 * 89.99995 * 20 18 16 22 22 H 1.48507 * 109.46976 * 209.99988 * 20 18 16 23 23 H 1.48504 * 109.47347 * 329.99314 * 20 18 16 24 24 C 1.47024 * 110.64978 * 302.92235 * 11 10 8 25 25 C 1.53106 * 109.36632 * 59.35248 * 24 11 10 26 26 O 1.41962 * 110.67429 * 83.50923 * 8 7 6 27 27 H 1.08998 * 109.46984 * 59.99767 * 1 2 3 28 28 H 1.08997 * 109.46696 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46549 * 300.00034 * 1 2 3 30 30 H 1.08994 * 109.47148 * 240.00164 * 2 1 3 31 31 H 1.08996 * 109.46984 * 119.99687 * 2 1 3 32 32 H 1.09001 * 109.88122 * 300.44517 * 6 5 3 33 33 H 1.09001 * 109.88243 * 61.44835 * 6 5 3 34 34 H 1.09003 * 110.73399 * 263.15569 * 7 6 5 35 35 H 1.09001 * 110.73075 * 139.85775 * 7 6 5 36 36 H 1.08998 * 110.37571 * 37.81989 * 9 5 3 37 37 H 1.08993 * 110.37603 * 275.47508 * 9 5 3 38 38 H 1.08998 * 109.48201 * 170.78804 * 10 8 7 39 39 H 1.08995 * 109.48043 * 50.74838 * 10 8 7 40 40 H 1.09007 * 109.47408 * 173.64759 * 12 11 10 41 41 H 1.08999 * 109.47173 * 53.65121 * 12 11 10 42 42 H 0.97004 * 119.99951 * 0.02562 * 15 13 12 43 43 H 0.97000 * 120.00537 * 180.02562 * 19 18 16 44 44 H 1.08993 * 109.49398 * 179.32632 * 24 11 10 45 45 H 1.09000 * 109.48965 * 299.39061 * 24 11 10 46 46 H 1.08999 * 109.51820 * 182.47949 * 25 24 11 47 47 H 1.09001 * 109.56745 * 62.32665 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3575 1.6672 0.0005 6 6 4.4183 0.6484 0.0017 7 6 5.7708 1.3939 0.0282 8 6 5.3891 2.7794 0.5920 9 6 3.9834 3.0035 0.0011 10 6 6.3558 3.8428 0.0918 11 7 7.6756 3.6327 0.7080 12 6 8.6429 4.6315 0.2340 13 6 8.9029 4.4213 -1.2354 14 8 8.4283 3.4607 -1.8039 15 7 9.6627 5.3007 -1.9178 16 6 9.8988 5.1097 -3.2548 17 1 9.4763 4.2545 -3.7610 18 6 10.6827 6.0162 -3.9583 19 7 10.9094 5.8329 -5.2396 20 14 11.4153 7.4944 -3.0822 21 1 12.7516 7.1375 -2.5420 22 1 11.5535 8.6197 -4.0413 23 1 10.5230 7.9013 -1.9671 24 6 7.5724 3.6537 2.1744 25 6 6.6145 2.5503 2.6318 26 8 5.3397 2.7470 2.0104 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 4.3254 0.0175 0.8857 33 1 4.3467 0.0377 -0.8984 34 1 6.1803 1.4862 -0.9778 35 1 6.4764 0.8896 0.6884 36 1 3.4133 3.6894 0.6277 37 1 4.0565 3.3888 -1.0158 38 1 5.9816 4.8303 0.3619 39 1 6.4452 3.7718 -0.9922 40 1 9.5761 4.5246 0.7871 41 1 8.2394 5.6317 0.3922 42 1 10.0426 6.0688 -1.4631 43 1 11.4568 6.4653 -5.7307 44 1 8.5567 3.4846 2.6108 45 1 7.1922 4.6225 2.4984 46 1 6.5019 2.5917 3.7152 47 1 7.0139 1.5777 2.3440 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485553880.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:16 Heat of formation + Delta-G solvation = -121.100444 kcal Electronic energy + Delta-G solvation = -28813.323370 eV Core-core repulsion = 24802.532989 eV Total energy + Delta-G solvation = -4010.790381 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.88531 -40.61557 -39.93497 -37.77518 -36.54297 -35.77608 -33.91609 -33.73438 -32.78335 -31.07527 -30.36984 -28.46321 -27.02784 -25.37826 -25.07490 -23.78177 -22.99480 -21.25069 -20.69852 -20.22228 -19.90435 -18.39559 -17.99758 -17.70666 -17.22087 -16.85397 -16.77794 -16.32433 -16.17767 -15.88605 -15.66793 -15.38524 -15.14625 -14.92747 -14.77563 -14.26319 -14.17941 -14.07077 -13.98481 -13.68594 -13.53673 -13.22051 -13.14176 -12.88378 -12.77648 -12.61462 -12.41590 -12.27462 -12.25065 -12.11144 -12.01605 -11.98078 -11.49860 -11.39166 -10.99344 -10.70446 -10.29231 -10.21772 -9.73845 -9.31826 -8.40540 -6.00612 1.29678 1.34853 1.43466 1.57998 1.89561 1.97091 2.22739 2.48967 2.58567 3.07740 3.16614 3.44370 3.50233 3.73375 3.81333 3.99975 4.06222 4.11857 4.17769 4.19609 4.26161 4.28054 4.36431 4.40767 4.44602 4.53611 4.57788 4.60030 4.68341 4.75802 4.78445 4.84904 4.95048 4.96830 5.02783 5.07372 5.11437 5.22293 5.35109 5.52836 5.78586 5.94776 6.03087 6.21716 6.46320 6.60505 6.89891 7.08763 7.41469 7.98065 8.76965 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018284 B = 0.002882 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.006608 B = 9714.255836 C =10590.143229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.131 4.131 3 C 0.517 3.483 4 O -0.593 6.593 5 N -0.616 5.616 6 C 0.106 3.894 7 C -0.137 4.137 8 C 0.123 3.877 9 C 0.119 3.881 10 C 0.041 3.959 11 N -0.523 5.523 12 C 0.053 3.947 13 C 0.452 3.548 14 O -0.599 6.599 15 N -0.594 5.594 16 C -0.323 4.323 17 H 0.058 0.942 18 C -0.016 4.016 19 N -0.935 5.935 20 Si 0.962 3.038 21 H -0.256 1.256 22 H -0.278 1.278 23 H -0.233 1.233 24 C 0.015 3.985 25 C 0.061 3.939 26 O -0.377 6.377 27 H 0.044 0.956 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.037 0.963 39 H 0.075 0.925 40 H 0.128 0.872 41 H 0.073 0.927 42 H 0.388 0.612 43 H 0.278 0.722 44 H 0.111 0.889 45 H 0.047 0.953 46 H 0.127 0.873 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.063 -8.604 19.891 23.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.171 4.171 3 C 0.308 3.692 4 O -0.474 6.474 5 N -0.350 5.350 6 C -0.016 4.016 7 C -0.175 4.175 8 C 0.082 3.918 9 C -0.005 4.005 10 C -0.088 4.088 11 N -0.248 5.248 12 C -0.078 4.078 13 C 0.240 3.760 14 O -0.482 6.482 15 N -0.237 5.237 16 C -0.452 4.452 17 H 0.076 0.924 18 C -0.215 4.215 19 N -0.576 5.576 20 Si 0.783 3.217 21 H -0.181 1.181 22 H -0.203 1.203 23 H -0.157 1.157 24 C -0.112 4.112 25 C -0.015 4.015 26 O -0.296 6.296 27 H 0.063 0.937 28 H 0.108 0.892 29 H 0.065 0.935 30 H 0.132 0.868 31 H 0.136 0.864 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.118 0.882 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.055 0.945 39 H 0.093 0.907 40 H 0.146 0.854 41 H 0.091 0.909 42 H 0.223 0.777 43 H 0.087 0.913 44 H 0.130 0.870 45 H 0.065 0.935 46 H 0.145 0.855 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.787 -9.197 19.291 23.939 hybrid contribution 0.714 1.996 -0.484 2.175 sum -10.073 -7.201 18.807 22.517 Atomic orbital electron populations 1.21546 0.93139 1.02829 1.01836 1.21687 0.98250 0.90670 1.06446 1.21344 0.79838 0.93373 0.74599 1.90671 1.55486 1.48610 1.52637 1.48663 1.05752 1.07889 1.72648 1.22259 0.85061 0.90647 1.03646 1.22934 0.96775 0.95080 1.02737 1.21614 0.93084 0.95107 0.82033 1.21929 0.91687 0.86509 1.00338 1.22425 0.88837 0.96779 1.00736 1.61816 1.06892 1.49158 1.06954 1.21881 0.99036 0.95106 0.91779 1.20804 0.81580 0.83695 0.89946 1.90521 1.53884 1.32273 1.71530 1.42069 1.47762 1.25032 1.08788 1.18979 1.30837 1.10662 0.84724 0.92412 1.26079 0.97320 1.01836 0.96217 1.69799 1.39455 1.38908 1.09455 0.85399 0.79863 0.77294 0.79177 1.18053 1.20338 1.15675 1.22970 1.02519 0.99436 0.86285 1.22964 0.82096 0.97806 0.98672 1.87828 1.31142 1.93397 1.17204 0.93692 0.89192 0.93453 0.86767 0.86443 0.88798 0.89395 0.91024 0.88199 0.90917 0.90715 0.94524 0.90671 0.85439 0.90944 0.77673 0.91251 0.87047 0.93499 0.85492 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.20 71.98 0.66 -1.52 16 2 C -0.13 -2.02 5.61 29.85 0.17 -1.85 16 3 C 0.52 13.31 7.85 87.66 0.69 14.00 16 4 O -0.59 -20.56 16.25 -3.03 -0.05 -20.61 16 5 N -0.62 -15.14 3.33 -812.58 -2.71 -17.85 16 6 C 0.11 1.97 6.50 86.76 0.56 2.53 16 7 C -0.14 -3.24 5.83 31.56 0.18 -3.06 16 8 C 0.12 3.16 0.83 -10.22 -0.01 3.15 16 9 C 0.12 3.32 6.08 86.56 0.53 3.84 16 10 C 0.04 1.23 3.94 85.98 0.34 1.57 16 11 N -0.52 -14.29 4.30 -901.24 -3.87 -18.16 16 12 C 0.05 1.52 5.44 85.55 0.47 1.98 16 13 C 0.45 19.31 7.37 87.66 0.65 19.95 16 14 O -0.60 -30.91 14.24 -3.08 -0.04 -30.95 16 15 N -0.59 -27.07 5.09 -306.99 -1.56 -28.63 16 16 C -0.32 -18.44 10.16 84.04 0.85 -17.59 16 17 H 0.06 3.93 7.39 -2.91 -0.02 3.91 16 18 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 19 N -0.94 -55.90 13.96 21.67 0.30 -55.60 16 20 Si 0.96 38.29 27.74 68.60 1.90 40.20 16 21 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 22 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 23 H -0.23 -7.82 6.52 99.48 0.65 -7.17 16 24 C 0.02 0.28 5.62 86.32 0.49 0.77 16 25 C 0.06 1.04 6.79 72.02 0.49 1.53 16 26 O -0.38 -8.90 10.33 -148.96 -1.54 -10.44 16 27 H 0.04 0.86 8.10 -2.39 -0.02 0.84 16 28 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 30 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 2.12 7.90 -2.39 -0.02 2.10 16 35 H 0.10 2.14 6.33 -2.39 -0.02 2.12 16 36 H 0.07 2.19 8.05 -2.39 -0.02 2.17 16 37 H 0.07 2.20 8.00 -2.39 -0.02 2.19 16 38 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 2.84 5.98 -2.39 -0.01 2.83 16 40 H 0.13 2.86 8.03 -2.38 -0.02 2.84 16 41 H 0.07 1.79 8.12 -2.39 -0.02 1.77 16 42 H 0.39 14.68 5.76 -92.71 -0.53 14.14 16 43 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 44 H 0.11 1.56 8.07 -2.39 -0.02 1.55 16 45 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.07 1.12 6.51 -2.39 -0.02 1.11 16 Total: -1.00 -80.74 372.49 -0.66 -81.40 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: 0.38 Total: 35.76 kcal Atomic # 6 Polarization: 18.37 SS G_CDS: 6.53 Total: 24.90 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -7.84 Total: -120.24 kcal Atomic # 8 Polarization: -60.38 SS G_CDS: -1.63 Total: -62.01 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 1.90 Total: 40.20 kcal Total: -80.74 -0.66 -81.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485553880.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.705 kcal (2) G-P(sol) polarization free energy of solvation -80.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds