Wall clock time and date at job start Fri Apr 10 2020 18:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.86881 * 2 1 4 4 O 1.43746 * 109.88194 * 238.84061 * 2 1 3 5 5 C 1.44372 * 106.97725 * 214.06441 * 4 2 1 6 6 C 1.54992 * 103.49615 * 40.05804 * 5 4 2 7 7 C 1.54093 * 109.88185 * 121.00672 * 2 1 3 8 8 H 1.09004 * 110.48949 * 2.78243 * 7 2 1 9 9 C 1.50703 * 110.49030 * 240.26280 * 7 2 1 10 10 O 1.21282 * 119.99756 * 0.02562 * 9 7 2 11 11 N 1.34778 * 119.99896 * 179.97438 * 9 7 2 12 12 C 1.46497 * 119.99722 * 180.02562 * 11 9 7 13 13 H 1.08997 * 112.85133 * 334.66767 * 12 11 9 14 14 C 1.53785 * 113.61530 * 105.86344 * 12 11 9 15 15 C 1.54057 * 86.98496 * 89.16363 * 14 12 11 16 16 H 1.09006 * 113.60885 * 270.88719 * 15 14 12 17 17 N 1.46893 * 113.62154 * 139.98318 * 15 14 12 18 18 C 1.46895 * 111.00323 * 107.50173 * 17 15 14 19 19 C 1.50700 * 109.47258 * 179.97438 * 18 17 15 20 20 O 1.21290 * 119.99822 * 0.02562 * 19 18 17 21 21 N 1.34772 * 119.99930 * 179.97438 * 19 18 17 22 22 C 1.37106 * 119.99946 * 180.02562 * 21 19 18 23 23 H 1.07996 * 119.99690 * 0.02562 * 22 21 19 24 24 C 1.38950 * 119.99858 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00014 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99972 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46671 * 60.00379 * 26 24 22 28 28 H 1.48493 * 109.47131 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47143 * 300.00930 * 26 24 22 30 30 C 1.53780 * 87.07936 * 25.43053 * 15 14 12 31 31 H 1.09002 * 109.47153 * 298.99138 * 1 2 3 32 32 H 1.09001 * 109.46832 * 178.99329 * 1 2 3 33 33 H 1.09004 * 109.47261 * 58.99310 * 1 2 3 34 34 H 1.09003 * 110.61774 * 281.55372 * 5 4 2 35 35 H 1.09004 * 110.62247 * 158.56361 * 5 4 2 36 36 H 1.08995 * 110.90926 * 204.78731 * 6 5 4 37 37 H 1.08996 * 110.93739 * 81.18756 * 6 5 4 38 38 H 0.97003 * 120.00327 * 0.02562 * 11 9 7 39 39 H 1.08990 * 113.61685 * 203.66380 * 14 12 11 40 40 H 1.09003 * 113.61486 * 334.57165 * 14 12 11 41 41 H 1.00902 * 110.99700 * 343.54525 * 17 15 14 42 42 H 1.08994 * 109.47463 * 300.00361 * 18 17 15 43 43 H 1.09010 * 109.47008 * 60.00249 * 18 17 15 44 44 H 0.96999 * 120.00419 * 0.02562 * 21 19 18 45 45 H 0.97003 * 120.00003 * 180.02562 * 25 24 22 46 46 H 1.08997 * 113.61950 * 220.02710 * 30 15 14 47 47 H 1.09003 * 113.61178 * 89.11793 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0188 -0.6994 -1.1568 5 6 3.2379 -1.3651 -0.7629 6 6 2.9196 -1.8906 0.6600 7 6 2.0540 -0.7465 1.2420 8 1 1.2247 -1.1525 1.8213 9 6 2.8919 0.1713 2.0946 10 8 3.0656 1.3229 1.7561 11 7 3.4474 -0.2875 3.2336 12 6 4.2614 0.6048 4.0626 13 1 4.7068 1.4214 3.4944 14 6 3.5564 1.0632 5.3502 15 6 4.1484 -0.1895 6.0236 16 1 3.5118 -1.0707 5.9428 17 7 4.6252 0.0478 7.3926 18 6 3.7278 -0.5710 8.3773 19 6 4.2485 -0.3075 9.7667 20 8 5.2667 0.3333 9.9214 21 7 3.5822 -0.7829 10.8374 22 6 4.0556 -0.5426 12.1016 23 1 4.9622 0.0279 12.2393 24 6 3.3689 -1.0332 13.2054 25 7 2.2661 -1.7279 13.0378 26 14 4.0143 -0.7066 14.9278 27 1 4.0740 0.7582 15.1643 28 1 3.1075 -1.3327 15.9231 29 1 5.3747 -1.2859 15.0648 30 6 5.2627 -0.1356 4.9651 31 1 -0.3633 0.4981 0.8989 32 1 -0.3633 -1.0275 -0.0181 33 1 -0.3634 0.5294 -0.8808 34 1 4.0685 -0.6598 -0.7348 35 1 3.4585 -2.1926 -1.4372 36 1 3.8332 -2.0207 1.2400 37 1 2.3542 -2.8213 0.6141 38 1 3.3082 -1.2085 3.5045 39 1 3.9450 1.9992 5.7512 40 1 2.4687 1.0505 5.2806 41 1 4.7331 1.0349 7.5718 42 1 2.7292 -0.1461 8.2764 43 1 3.6843 -1.6463 8.2039 44 1 2.7678 -1.2950 10.7138 45 1 1.7866 -2.0700 13.8084 46 1 5.5515 -1.1154 4.5848 47 1 6.1169 0.4734 5.2611 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490939589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:48 Heat of formation + Delta-G solvation = -126.104886 kcal Electronic energy + Delta-G solvation = -27068.874556 eV Core-core repulsion = 23057.867166 eV Total energy + Delta-G solvation = -4011.007390 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.79775 -40.58188 -39.94388 -38.92842 -36.13381 -35.45115 -34.05224 -33.27989 -32.98160 -32.23749 -28.52710 -27.49428 -26.65625 -26.10935 -24.26458 -23.42371 -22.89516 -21.29645 -21.07469 -20.46209 -19.88055 -18.56609 -17.86373 -17.30042 -17.05237 -16.90130 -16.47933 -16.42597 -16.31653 -16.00447 -15.81213 -15.45622 -15.39343 -14.85074 -14.38971 -14.28387 -14.19770 -13.58462 -13.52182 -13.47729 -13.45933 -13.27319 -13.12936 -12.87682 -12.76015 -12.56182 -12.43022 -12.33274 -12.12544 -12.03744 -11.85735 -11.77363 -11.50389 -11.36953 -11.01287 -10.60216 -10.33151 -10.12768 -10.01551 -9.23669 -8.46670 -5.95343 1.39875 1.41988 1.48662 1.52696 2.01756 2.05797 2.29342 2.84560 2.95439 3.20645 3.41628 3.44013 3.60210 3.65483 3.68598 3.74490 3.95905 4.04085 4.07375 4.20175 4.31098 4.32791 4.41327 4.51591 4.56707 4.60970 4.62720 4.69634 4.79496 4.80422 4.83978 4.92705 4.96342 5.01604 5.03685 5.09952 5.13848 5.23998 5.40823 5.52858 5.89219 5.93573 6.16740 6.39616 6.47769 6.60436 7.12717 7.16275 7.56650 8.12109 8.70334 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.028734 B = 0.001803 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.213663 B =15528.931200 C =15916.006561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 H 0.063 0.937 4 O -0.392 6.392 5 C 0.036 3.964 6 C -0.136 4.136 7 C -0.138 4.138 8 H 0.140 0.860 9 C 0.522 3.478 10 O -0.580 6.580 11 N -0.694 5.694 12 C 0.125 3.875 13 H 0.087 0.913 14 C -0.177 4.177 15 C 0.068 3.932 16 H 0.115 0.885 17 N -0.671 5.671 18 C 0.065 3.935 19 C 0.435 3.565 20 O -0.625 6.625 21 N -0.573 5.573 22 C -0.335 4.335 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.992 3.008 27 H -0.273 1.273 28 H -0.270 1.270 29 H -0.272 1.272 30 C -0.122 4.122 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.418 0.582 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.345 0.655 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.091 0.909 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.043 -4.191 -25.899 26.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.016 3.984 3 H 0.081 0.919 4 O -0.312 6.312 5 C -0.040 4.040 6 C -0.173 4.173 7 C -0.160 4.160 8 H 0.158 0.842 9 C 0.310 3.690 10 O -0.459 6.459 11 N -0.345 5.345 12 C 0.019 3.981 13 H 0.105 0.895 14 C -0.218 4.218 15 C -0.042 4.042 16 H 0.132 0.868 17 N -0.302 5.302 18 C -0.067 4.067 19 C 0.223 3.777 20 O -0.512 6.512 21 N -0.210 5.210 22 C -0.465 4.465 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.816 3.184 27 H -0.198 1.198 28 H -0.195 1.195 29 H -0.197 1.197 30 C -0.161 4.161 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.134 0.866 36 H 0.116 0.884 37 H 0.132 0.868 38 H 0.255 0.745 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.165 0.835 42 H 0.083 0.917 43 H 0.126 0.874 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.110 0.890 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.038 -3.590 -26.077 26.498 hybrid contribution -0.772 0.493 1.295 1.586 sum -3.810 -3.097 -24.782 25.264 Atomic orbital electron populations 1.21914 0.92009 1.03582 1.02905 1.22770 0.96255 0.95926 0.83424 0.91890 1.88867 1.40425 1.68017 1.33903 1.23748 0.86934 0.96719 0.96573 1.23200 1.00740 0.97733 0.95660 1.22775 0.99954 0.96193 0.97032 0.84243 1.20790 0.79198 0.87915 0.81128 1.90695 1.61945 1.20797 1.72479 1.45553 1.51134 1.15447 1.22409 1.21595 0.92465 0.93766 0.90272 0.89507 1.24192 1.01047 0.99361 0.97200 1.23321 0.96438 0.98088 0.86322 0.86756 1.60048 1.49083 1.19831 1.01263 1.21586 0.94872 1.01931 0.88301 1.20980 0.85747 0.83457 0.87536 1.90493 1.27888 1.45631 1.87164 1.41935 1.25164 1.48838 1.05090 1.19626 1.09721 1.33786 0.83339 0.90393 1.26029 0.95873 0.95926 1.03448 1.69657 1.17043 1.36055 1.33255 0.84999 0.78131 0.78574 0.76706 1.19782 1.19459 1.19745 1.23368 0.97102 1.01905 0.93676 0.90523 0.90535 0.92083 0.93325 0.86628 0.88383 0.86849 0.74476 0.89534 0.91213 0.83519 0.91689 0.87419 0.76921 0.91280 0.89031 0.88948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.36 71.98 0.67 -1.22 16 2 C 0.07 1.25 3.67 30.96 0.11 1.37 16 3 H 0.06 1.45 6.44 -2.39 -0.02 1.44 16 4 O -0.39 -7.26 11.19 -148.98 -1.67 -8.93 16 5 C 0.04 0.45 7.72 72.66 0.56 1.01 16 6 C -0.14 -1.03 6.70 31.90 0.21 -0.82 16 7 C -0.14 -1.61 3.06 -10.55 -0.03 -1.65 16 8 H 0.14 0.94 7.70 -2.39 -0.02 0.92 16 9 C 0.52 9.08 7.06 87.66 0.62 9.70 16 10 O -0.58 -15.65 14.87 -3.03 -0.05 -15.70 16 11 N -0.69 -9.03 5.12 -440.02 -2.25 -11.28 16 12 C 0.13 2.13 4.30 45.52 0.20 2.32 16 13 H 0.09 1.83 7.50 -2.39 -0.02 1.81 16 14 C -0.18 -3.34 7.51 31.22 0.23 -3.10 16 15 C 0.07 1.31 4.07 45.54 0.19 1.50 16 16 H 0.11 1.75 7.87 -2.38 -0.02 1.73 16 17 N -0.67 -19.38 6.24 -492.38 -3.07 -22.46 16 18 C 0.07 2.09 6.01 85.56 0.51 2.60 16 19 C 0.44 20.23 7.82 87.66 0.69 20.92 16 20 O -0.63 -34.26 15.78 -3.06 -0.05 -34.31 16 21 N -0.57 -28.89 5.29 -306.99 -1.62 -30.52 16 22 C -0.34 -18.88 9.68 84.04 0.81 -18.07 16 23 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 24 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 25 N -0.92 -48.93 13.05 21.66 0.28 -48.65 16 26 Si 0.99 42.55 29.55 68.60 2.03 44.57 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 28 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 29 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 30 C -0.12 -2.01 7.62 31.12 0.24 -1.77 16 31 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.12 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.10 0.53 7.75 -2.39 -0.02 0.52 16 37 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.42 2.89 8.70 -92.71 -0.81 2.08 16 39 H 0.09 1.78 7.83 -2.39 -0.02 1.76 16 40 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.35 10.86 7.90 -89.69 -0.71 10.15 16 42 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 43 H 0.11 2.99 8.13 -2.38 -0.02 2.97 16 44 H 0.40 18.85 7.90 -92.71 -0.73 18.12 16 45 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 46 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -74.70 387.10 -2.16 -76.86 By element: Atomic # 1 Polarization: 39.07 SS G_CDS: -1.24 Total: 37.83 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 5.48 Total: 12.57 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -6.67 Total: -112.90 kcal Atomic # 8 Polarization: -57.18 SS G_CDS: -1.76 Total: -58.94 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -74.70 -2.16 -76.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490939589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.245 kcal (2) G-P(sol) polarization free energy of solvation -74.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds