Wall clock time and date at job start Fri Apr 10 2020 18:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.48270 * 2 1 4 4 C 1.53093 * 109.48369 * 239.96579 * 2 1 3 5 5 C 1.53179 * 109.16281 * 182.41032 * 4 2 1 6 6 H 1.09000 * 109.61262 * 176.89408 * 5 4 2 7 7 C 1.50700 * 109.54427 * 297.10919 * 5 4 2 8 8 O 1.21286 * 119.99818 * 359.56429 * 7 5 4 9 9 N 1.34778 * 120.00154 * 179.55629 * 7 5 4 10 10 C 1.46501 * 119.99987 * 180.02562 * 9 7 5 11 11 C 1.53512 * 114.16686 * 155.00181 * 10 9 7 12 12 N 1.47482 * 87.93064 * 87.62556 * 11 10 9 13 13 C 1.46901 * 111.00126 * 138.70321 * 12 11 10 14 14 C 1.50696 * 109.47252 * 169.99588 * 13 12 11 15 15 O 1.21302 * 120.00026 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00336 * 179.97438 * 14 13 12 17 17 C 1.37095 * 120.00121 * 180.02562 * 16 14 13 18 18 H 1.07995 * 120.00542 * 359.97438 * 17 16 14 19 19 C 1.38950 * 119.99766 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00118 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00012 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46845 * 269.99991 * 21 19 17 23 23 H 1.48503 * 109.47399 * 29.99481 * 21 19 17 24 24 H 1.48498 * 109.47295 * 150.00088 * 21 19 17 25 25 C 1.47473 * 87.83897 * 27.00672 * 12 11 10 26 26 C 1.53176 * 109.03723 * 56.98110 * 5 4 2 27 27 C 1.53086 * 109.16259 * 303.01550 * 26 5 4 28 28 O 1.42900 * 109.41438 * 57.61226 * 27 26 5 29 29 H 1.09003 * 109.47014 * 299.97612 * 1 2 3 30 30 H 1.09000 * 109.46777 * 59.97218 * 1 2 3 31 31 H 1.08995 * 109.46963 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.51759 * 62.50434 * 4 2 1 33 33 H 1.09002 * 109.51777 * 302.31826 * 4 2 1 34 34 H 0.97003 * 119.99427 * 0.02562 * 9 7 5 35 35 H 1.08999 * 113.25751 * 22.05154 * 10 9 7 36 36 H 1.09000 * 113.48054 * 332.85794 * 11 10 9 37 37 H 1.08998 * 113.47336 * 202.39229 * 11 10 9 38 38 H 1.09004 * 109.47109 * 49.99365 * 13 12 11 39 39 H 1.08997 * 109.46839 * 289.99884 * 13 12 11 40 40 H 0.97000 * 119.99425 * 0.02562 * 16 14 13 41 41 H 0.97000 * 120.00151 * 359.97438 * 20 19 17 42 42 H 1.09008 * 113.47580 * 87.75447 * 25 12 11 43 43 H 1.08997 * 113.47830 * 218.22187 * 25 12 11 44 44 H 1.08999 * 109.51868 * 62.92595 * 26 5 4 45 45 H 1.09002 * 109.51868 * 183.10972 * 26 5 4 46 46 H 1.09005 * 109.47881 * 177.59032 * 27 26 5 47 47 H 1.08993 * 109.48334 * 297.62675 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7224 -1.2495 5 6 3.5712 -0.7710 -1.2120 6 1 3.9406 -1.3319 -2.0704 7 6 4.1212 0.6315 -1.2518 8 8 3.3652 1.5779 -1.3129 9 7 5.4533 0.8341 -1.2193 10 6 5.9880 2.1975 -1.2574 11 6 7.3805 2.3443 -0.6282 12 7 7.9523 2.0000 -1.9433 13 6 9.1156 2.8436 -2.2488 14 6 9.8173 2.3083 -3.4703 15 8 9.3901 1.3215 -4.0315 16 7 10.9190 2.9267 -3.9398 17 6 11.5570 2.4401 -5.0513 18 1 11.1772 1.5610 -5.5506 19 6 12.6931 3.0773 -5.5350 20 7 13.1556 4.1467 -4.9273 21 14 13.5622 2.4147 -7.0500 22 1 14.5934 1.4289 -6.6375 23 1 12.5730 1.7537 -7.9387 24 1 14.2111 3.5346 -7.7779 25 6 6.7275 2.5465 -2.5566 26 6 4.0176 -1.4601 0.0811 27 6 3.4307 -0.7092 1.2792 28 8 2.0066 -0.6741 1.1665 29 1 -0.3633 0.5135 0.8902 30 1 -0.3633 0.5143 -0.8897 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7149 -0.1845 -2.1397 33 1 1.6443 -1.7376 -1.2707 34 1 6.0579 0.0771 -1.1706 35 1 5.2699 2.9507 -0.9329 36 1 7.5888 1.6031 0.1434 37 1 7.6076 3.3614 -0.3088 38 1 9.8024 2.8356 -1.4024 39 1 8.7842 3.8645 -2.4382 40 1 11.2603 3.7161 -3.4912 41 1 12.7038 4.4915 -4.1412 42 1 6.7803 3.6177 -2.7518 43 1 6.3824 1.9767 -3.4192 44 1 3.6613 -2.4902 0.0866 45 1 5.1059 -1.4498 0.1423 46 1 3.7100 -1.2201 2.2007 47 1 3.8193 0.3090 1.2958 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494474717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:01 Heat of formation + Delta-G solvation = -111.744155 kcal Electronic energy + Delta-G solvation = -27939.175622 eV Core-core repulsion = 23928.790960 eV Total energy + Delta-G solvation = -4010.384662 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.06418 -41.15773 -39.87534 -38.98971 -36.36068 -35.27941 -34.56510 -33.59317 -33.15581 -31.10231 -28.85900 -27.30300 -27.00985 -25.93897 -24.97921 -23.77369 -22.65991 -21.63092 -20.80624 -20.70667 -19.97164 -18.29643 -17.84721 -17.35879 -17.30729 -17.10044 -17.04661 -16.52707 -16.25574 -16.02274 -15.68496 -15.47266 -15.21231 -15.10620 -14.83059 -14.62963 -13.92028 -13.83603 -13.57066 -13.39246 -13.37090 -13.30243 -12.94778 -12.93595 -12.81653 -12.63509 -12.38980 -12.06235 -11.95978 -11.93391 -11.85514 -11.71468 -11.52595 -11.47565 -10.86293 -10.47364 -10.27745 -10.11378 -10.10176 -9.81219 -8.93853 -6.07668 1.50857 1.50953 1.53406 1.80448 2.00800 2.04620 2.38309 2.73485 2.85299 3.14204 3.22792 3.41740 3.51778 3.67469 3.70149 3.78633 3.95787 4.04706 4.07255 4.14376 4.27501 4.29746 4.37947 4.40652 4.43699 4.52356 4.57174 4.67251 4.69326 4.72546 4.75436 4.80567 4.84484 4.95471 5.04188 5.07637 5.22130 5.24155 5.29490 5.47130 5.58213 5.86272 5.96176 6.30470 6.48518 6.57184 6.74846 7.16145 7.43871 7.93894 8.54106 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.031580 B = 0.002081 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.418896 B =13451.033359 C =13660.637753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.073 3.927 3 H 0.058 0.942 4 C -0.126 4.126 5 C -0.113 4.113 6 H 0.119 0.881 7 C 0.518 3.482 8 O -0.572 6.572 9 N -0.695 5.695 10 C 0.127 3.873 11 C 0.001 3.999 12 N -0.468 5.468 13 C 0.021 3.979 14 C 0.445 3.555 15 O -0.614 6.614 16 N -0.590 5.590 17 C -0.409 4.409 18 H 0.070 0.930 19 C -0.043 4.043 20 N -0.917 5.917 21 Si 1.135 2.865 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.272 1.272 25 C -0.015 4.015 26 C -0.140 4.140 27 C 0.055 3.945 28 O -0.396 6.396 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.414 0.586 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.384 0.616 41 H 0.260 0.740 42 H 0.087 0.913 43 H 0.059 0.941 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.114 0.886 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.689 -6.940 14.454 25.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.015 3.985 3 H 0.076 0.924 4 C -0.164 4.164 5 C -0.134 4.134 6 H 0.136 0.864 7 C 0.306 3.694 8 O -0.451 6.451 9 N -0.345 5.345 10 C 0.020 3.980 11 C -0.128 4.128 12 N -0.190 5.190 13 C -0.111 4.111 14 C 0.233 3.767 15 O -0.499 6.499 16 N -0.230 5.230 17 C -0.538 4.538 18 H 0.088 0.912 19 C -0.242 4.242 20 N -0.557 5.557 21 Si 0.955 3.045 22 H -0.195 1.195 23 H -0.204 1.204 24 H -0.197 1.197 25 C -0.145 4.145 26 C -0.178 4.178 27 C -0.022 4.022 28 O -0.316 6.316 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.251 0.749 35 H 0.131 0.869 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.218 0.782 41 H 0.070 0.930 42 H 0.105 0.895 43 H 0.077 0.923 44 H 0.117 0.883 45 H 0.114 0.886 46 H 0.132 0.868 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -19.080 -7.442 12.994 24.254 hybrid contribution -0.527 1.034 0.844 1.435 sum -19.607 -6.408 13.838 24.839 Atomic orbital electron populations 1.21740 0.92256 1.03084 1.02668 1.22344 0.95864 0.95648 0.84601 0.92389 1.21993 0.92985 1.02423 0.98950 1.21511 0.97462 0.92288 1.02111 0.86353 1.21101 0.81919 0.92111 0.74267 1.90640 1.58271 1.45247 1.50989 1.45573 1.06843 1.08413 1.73668 1.21859 0.95107 0.85729 0.95319 1.24342 0.91395 1.03638 0.93431 1.68781 1.00554 1.44050 1.05647 1.22411 0.95849 0.96401 0.96441 1.20843 0.82293 0.85611 0.87973 1.90496 1.67656 1.29292 1.62458 1.42021 1.25745 1.27965 1.27248 1.20503 1.11910 1.14310 1.07062 0.91175 1.27805 0.95292 0.94953 1.06107 1.70944 1.41615 1.22445 1.20663 0.82600 0.75180 0.75664 0.71060 1.19503 1.20447 1.19719 1.24432 0.91343 0.99806 0.98952 1.22202 1.02491 1.00961 0.92168 1.22694 0.80681 0.99252 0.99543 1.87879 1.21706 1.78165 1.43861 0.92222 0.90441 0.91293 0.90957 0.88929 0.74894 0.86866 0.87543 0.87622 0.86802 0.89740 0.78159 0.92951 0.89532 0.92271 0.88318 0.88639 0.86823 0.94644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.56 71.98 0.69 -1.55 16 2 C 0.07 1.43 2.98 30.62 0.09 1.52 16 3 H 0.06 1.44 5.82 -2.39 -0.01 1.43 16 4 C -0.13 -2.13 4.56 30.68 0.14 -1.99 16 5 C -0.11 -1.80 3.04 -11.42 -0.03 -1.83 16 6 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 7 C 0.52 11.19 5.82 87.66 0.51 11.70 16 8 O -0.57 -16.13 13.45 -3.05 -0.04 -16.17 16 9 N -0.69 -13.83 5.26 -441.69 -2.33 -16.16 16 10 C 0.13 2.67 4.60 45.45 0.21 2.88 16 11 C 0.00 0.02 7.45 83.58 0.62 0.64 16 12 N -0.47 -13.53 5.82 -932.53 -5.43 -18.96 16 13 C 0.02 0.66 5.30 85.56 0.45 1.11 16 14 C 0.45 20.99 7.85 87.66 0.69 21.68 16 15 O -0.61 -34.50 16.01 -3.10 -0.05 -34.55 16 16 N -0.59 -29.86 5.28 -306.98 -1.62 -31.48 16 17 C -0.41 -23.45 9.68 84.04 0.81 -22.64 16 18 H 0.07 4.36 7.16 -2.91 -0.02 4.34 16 19 C -0.04 -2.37 5.50 84.93 0.47 -1.90 16 20 N -0.92 -51.04 13.68 21.66 0.30 -50.74 16 21 Si 1.13 48.74 29.92 68.60 2.05 50.80 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 25 C -0.01 -0.41 7.52 83.58 0.63 0.22 16 26 C -0.14 -1.70 5.56 30.68 0.17 -1.53 16 27 C 0.05 0.84 6.62 72.01 0.48 1.32 16 28 O -0.40 -7.99 10.41 -148.98 -1.55 -9.54 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 1.34 8.02 -2.39 -0.02 1.32 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.41 7.30 8.15 -92.71 -0.76 6.55 16 35 H 0.11 2.38 7.45 -2.39 -0.02 2.37 16 36 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.11 1.51 7.91 -2.39 -0.02 1.49 16 38 H 0.11 3.06 8.08 -2.38 -0.02 3.04 16 39 H 0.08 2.30 7.30 -2.39 -0.02 2.29 16 40 H 0.38 17.69 6.73 -92.71 -0.62 17.07 16 41 H 0.26 13.91 6.78 -92.71 -0.63 13.28 16 42 H 0.09 2.16 7.42 -2.38 -0.02 2.14 16 43 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.10 0.88 7.50 -2.39 -0.02 0.86 16 46 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 47 H 0.04 0.63 7.38 -2.39 -0.02 0.61 16 Total: -1.00 -77.42 376.15 -2.99 -80.41 By element: Atomic # 1 Polarization: 37.01 SS G_CDS: -0.24 Total: 36.77 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 5.92 Total: 9.64 kcal Atomic # 7 Polarization: -108.26 SS G_CDS: -9.08 Total: -117.34 kcal Atomic # 8 Polarization: -58.62 SS G_CDS: -1.64 Total: -60.26 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 2.05 Total: 50.80 kcal Total: -77.42 -2.99 -80.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494474717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.338 kcal (2) G-P(sol) polarization free energy of solvation -77.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds