Wall clock time and date at job start Fri Apr 10 2020 18:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.80760 * 2 1 4 4 C 1.55005 * 110.93350 * 236.35283 * 2 1 3 5 5 O 1.44387 * 103.48635 * 204.76429 * 4 2 1 6 6 C 1.43741 * 106.97443 * 40.06139 * 5 4 2 7 7 H 1.09005 * 109.99932 * 92.97793 * 6 5 4 8 8 C 1.50693 * 109.87759 * 214.05830 * 6 5 4 9 9 O 1.21280 * 120.00265 * 2.83461 * 8 6 5 10 10 N 1.34780 * 120.00326 * 182.83517 * 8 6 5 11 11 C 1.46496 * 119.99462 * 359.97438 * 10 8 6 12 12 C 1.46500 * 120.00284 * 180.02562 * 10 8 6 13 13 C 1.53514 * 114.16836 * 239.99753 * 12 10 8 14 14 N 1.47482 * 87.93039 * 220.13972 * 13 12 10 15 15 C 1.46901 * 110.99764 * 138.70591 * 14 13 12 16 16 C 1.50701 * 109.46921 * 169.99672 * 15 14 13 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47117 * 59.99412 * 23 21 19 25 25 H 1.48498 * 109.47600 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47088 * 299.99811 * 23 21 19 27 27 C 1.47480 * 87.83699 * 27.01095 * 14 13 12 28 28 C 1.54099 * 107.29818 * 333.48520 * 6 5 4 29 29 H 1.09003 * 109.46704 * 296.36922 * 1 2 3 30 30 H 1.09005 * 109.47031 * 56.36574 * 1 2 3 31 31 H 1.08999 * 109.47189 * 176.36658 * 1 2 3 32 32 H 1.08996 * 110.61828 * 323.26356 * 4 2 1 33 33 H 1.09002 * 110.61768 * 86.26876 * 4 2 1 34 34 H 1.08997 * 109.48089 * 269.99850 * 11 10 8 35 35 H 1.08994 * 109.47470 * 30.00483 * 11 10 8 36 36 H 1.09009 * 109.47244 * 150.00059 * 11 10 8 37 37 H 1.08999 * 113.25779 * 12.95082 * 12 10 8 38 38 H 1.08994 * 113.47382 * 105.36815 * 13 12 10 39 39 H 1.09001 * 113.53015 * 334.91225 * 13 12 10 40 40 H 1.09002 * 109.47401 * 49.99700 * 15 14 13 41 41 H 1.09001 * 109.46874 * 289.99713 * 15 14 13 42 42 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 43 43 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 44 44 H 1.08999 * 113.47664 * 87.75895 * 27 14 13 45 45 H 1.08994 * 113.47488 * 218.22090 * 27 14 13 46 46 H 1.08996 * 110.49048 * 120.70063 * 28 6 5 47 47 H 1.08996 * 110.49034 * 243.22678 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 6 2.0838 -0.8022 -1.2052 5 8 3.3949 -1.2136 -0.7619 6 6 3.2723 -1.5874 0.6206 7 1 3.0847 -2.6581 0.7021 8 6 4.5351 -1.2308 1.3617 9 8 5.4365 -0.6607 0.7845 10 7 4.6628 -1.5455 2.6660 11 6 3.5736 -2.2336 3.3634 12 6 5.8901 -1.1983 3.3866 13 6 6.6365 -2.4043 3.9741 14 7 6.9026 -1.5877 5.1731 15 6 6.7354 -2.3811 6.3980 16 6 7.2479 -1.5968 7.5784 17 8 7.7068 -0.4859 7.4152 18 7 7.1952 -2.1292 8.8154 19 6 7.6610 -1.4155 9.8893 20 1 8.0704 -0.4267 9.7439 21 6 7.6073 -1.9646 11.1645 22 7 7.1096 -3.1679 11.3413 23 14 8.2412 -0.9918 12.6278 24 1 7.4751 0.2744 12.7498 25 1 8.0718 -1.7936 13.8662 26 1 9.6802 -0.6826 12.4307 27 6 5.6756 -0.8312 4.8616 28 6 2.0825 -0.8010 1.2041 29 1 -0.3633 0.4565 0.9208 30 1 -0.3633 0.5692 -0.8557 31 1 -0.3633 -1.0256 -0.0651 32 1 1.4574 -1.6706 -1.4087 33 1 2.1589 -0.1665 -2.0875 34 1 2.8959 -1.4973 3.7952 35 1 3.0281 -2.8594 2.6572 36 1 3.9866 -2.8565 4.1570 37 1 6.5269 -0.5016 2.8414 38 1 7.5372 -2.6692 3.4204 39 1 5.9929 -3.2625 4.1673 40 1 7.2970 -3.3110 6.3082 41 1 5.6790 -2.6072 6.5430 42 1 6.8279 -3.0174 8.9459 43 1 7.0717 -3.5511 12.2316 44 1 4.7747 -1.2689 5.2915 45 1 5.7619 0.2371 5.0603 46 1 1.3248 -1.4843 1.5876 47 1 2.4200 -0.1264 1.9909 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499707023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:12 Heat of formation + Delta-G solvation = -65.076143 kcal Electronic energy + Delta-G solvation = -27803.083884 eV Core-core repulsion = 23794.722899 eV Total energy + Delta-G solvation = -4008.360985 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.16899 -40.13574 -38.51965 -37.66980 -35.32345 -33.98587 -33.87480 -31.39282 -31.04509 -29.62855 -27.36455 -26.80498 -25.97999 -25.63155 -24.36431 -23.11786 -21.12664 -20.44029 -19.43531 -19.04550 -17.93143 -17.62159 -17.07272 -16.53580 -16.08501 -16.06252 -15.77300 -15.15159 -14.89968 -14.58147 -14.41294 -14.31733 -14.05866 -13.79306 -13.50105 -13.36607 -13.10089 -12.98374 -12.72153 -12.61116 -12.56439 -12.26320 -12.09109 -11.81082 -11.67698 -11.49405 -11.27453 -11.24082 -11.07001 -10.91026 -10.72828 -10.44151 -10.43171 -10.20997 -9.69283 -9.49038 -8.86902 -8.84414 -8.22480 -7.96040 -6.41562 -3.82275 2.32405 2.45870 3.20276 3.25662 3.30384 3.49109 3.87555 3.89972 4.03316 4.15429 4.24323 4.27247 4.35033 4.40619 4.64505 4.71693 4.73110 4.83098 4.93712 4.94806 5.06727 5.07910 5.15343 5.18389 5.22197 5.25739 5.28040 5.29450 5.36480 5.51227 5.57484 5.58418 5.63133 5.72134 5.73177 5.86640 6.01342 6.14806 6.25946 6.40714 6.48091 7.05003 7.14547 7.55267 7.93196 8.06032 8.62356 9.18686 9.54492 10.07130 10.76244 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.028086 B = 0.002079 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.702838 B =13464.435352 C =13860.715426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 H 0.089 0.911 4 C 0.048 3.952 5 O -0.347 6.347 6 C 0.063 3.937 7 H 0.094 0.906 8 C 0.515 3.485 9 O -0.515 6.515 10 N -0.603 5.603 11 C 0.069 3.931 12 C 0.119 3.881 13 C -0.019 4.019 14 N -0.433 5.433 15 C 0.012 3.988 16 C 0.446 3.554 17 O -0.573 6.573 18 N -0.567 5.567 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.904 5.904 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.004 4.004 28 C -0.143 4.143 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.133 0.867 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.059 0.941 42 H 0.391 0.609 43 H 0.271 0.729 44 H 0.072 0.928 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.942 -1.830 -21.034 27.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.146 4.146 3 H 0.107 0.893 4 C -0.029 4.029 5 O -0.265 6.265 6 C 0.001 3.999 7 H 0.112 0.888 8 C 0.301 3.699 9 O -0.389 6.389 10 N -0.338 5.338 11 C -0.074 4.074 12 C 0.015 3.985 13 C -0.149 4.149 14 N -0.155 5.155 15 C -0.120 4.120 16 C 0.231 3.769 17 O -0.456 6.456 18 N -0.204 5.204 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.134 4.134 28 C -0.181 4.181 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.151 0.849 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.224 0.776 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.113 0.887 46 H 0.107 0.893 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.311 -0.553 -21.287 26.228 hybrid contribution -0.947 -0.840 1.243 1.774 sum -16.258 -1.393 -20.044 25.846 Atomic orbital electron populations 1.21725 0.93425 1.02273 1.02511 1.22759 0.96823 1.00609 0.94394 0.89291 1.23744 0.83895 0.97731 0.97481 1.89024 1.29120 1.86191 1.22151 1.22620 0.93342 0.99946 0.83965 0.88813 1.20473 0.88646 0.79071 0.81664 1.90732 1.41245 1.40185 1.66747 1.47773 1.17560 1.58847 1.09614 1.21930 0.89802 0.97321 0.98300 1.22811 0.85693 0.98087 0.91935 1.24399 1.00516 0.96346 0.93618 1.68785 1.32179 1.14641 0.99932 1.22494 1.00281 0.97354 0.91911 1.19642 0.85500 0.88167 0.83611 1.90535 1.49751 1.20566 1.84771 1.41859 1.55301 1.18028 1.05236 1.19648 1.37238 1.01163 0.84701 0.88002 1.25249 0.97526 0.96242 0.98975 1.69604 1.45818 1.15181 1.23930 0.85917 0.79456 0.79113 0.79735 1.19936 1.20999 1.19877 1.24347 0.93178 1.02633 0.93232 1.23068 0.96391 0.99571 0.99089 0.91941 0.92059 0.92214 0.91712 0.88504 0.91834 0.90828 0.90540 0.84926 0.89021 0.91184 0.89238 0.92343 0.77580 0.91871 0.90963 0.88707 0.89304 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.57 9.19 37.16 0.34 -0.23 16 2 C -0.13 -0.77 3.72 -88.60 -0.33 -1.10 16 3 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 4 C 0.05 0.33 7.18 38.22 0.27 0.61 16 5 O -0.35 -3.90 10.74 -54.81 -0.59 -4.49 16 6 C 0.06 0.56 2.98 -27.31 -0.08 0.48 16 7 H 0.09 0.63 7.20 -51.93 -0.37 0.26 16 8 C 0.51 6.31 6.87 -10.99 -0.08 6.24 16 9 O -0.52 -8.72 16.03 -14.02 -0.22 -8.94 16 10 N -0.60 -6.28 3.11 -173.62 -0.54 -6.82 16 11 C 0.07 0.46 7.87 59.84 0.47 0.93 16 12 C 0.12 1.51 4.54 -67.72 -0.31 1.20 16 13 C -0.02 -0.24 7.24 -7.54 -0.05 -0.29 16 14 N -0.43 -7.21 5.82 -246.09 -1.43 -8.65 16 15 C 0.01 0.21 5.30 -4.97 -0.03 0.18 16 16 C 0.45 10.63 7.85 -10.98 -0.09 10.54 16 17 O -0.57 -15.98 16.01 5.55 0.09 -15.89 16 18 N -0.57 -14.37 5.29 -10.96 -0.06 -14.43 16 19 C -0.30 -8.34 9.68 -14.94 -0.14 -8.49 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.49 13.05 55.50 0.72 -23.76 16 23 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 C 0.00 -0.06 7.13 -7.54 -0.05 -0.11 16 28 C -0.14 -0.90 4.80 -25.20 -0.12 -1.02 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.20 8.09 -51.93 -0.42 -0.22 16 32 H 0.06 0.34 8.01 -51.93 -0.42 -0.08 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.36 7.83 -51.93 -0.41 -0.05 16 35 H 0.07 0.32 6.19 -51.93 -0.32 0.00 16 36 H 0.08 0.50 6.20 -51.92 -0.32 0.18 16 37 H 0.13 1.96 7.28 -51.93 -0.38 1.59 16 38 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.07 0.75 6.74 -51.93 -0.35 0.40 16 40 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 41 H 0.06 0.87 7.30 -51.93 -0.38 0.49 16 42 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 43 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.07 0.88 5.87 -51.93 -0.30 0.58 16 45 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 46 H 0.09 0.35 7.86 -51.93 -0.41 -0.06 16 47 H 0.08 0.60 7.29 -51.93 -0.38 0.22 16 LS Contribution 376.94 15.07 5.68 5.68 Total: -1.00 -35.89 376.94 -8.91 -44.80 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -7.25 Total: 6.99 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -0.29 Total: 9.42 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -1.31 Total: -53.66 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.72 Total: -29.32 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.89 -8.91 -44.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499707023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.278 kcal (2) G-P(sol) polarization free energy of solvation -35.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds