Wall clock time and date at job start Fri Apr 10 2020 18:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.80409 * 2 1 4 4 C 1.54997 * 110.90625 * 123.62404 * 2 1 3 5 5 O 1.44380 * 103.49157 * 155.25789 * 4 2 1 6 6 C 1.43750 * 106.97403 * 319.94016 * 5 4 2 7 7 H 1.09002 * 109.87585 * 266.94240 * 6 5 4 8 8 C 1.50692 * 109.87893 * 145.93683 * 6 5 4 9 9 O 1.21281 * 120.00534 * 356.45321 * 8 6 5 10 10 N 1.34777 * 120.00355 * 176.45310 * 8 6 5 11 11 C 1.46507 * 119.99467 * 359.97438 * 10 8 6 12 12 C 1.46494 * 120.00677 * 180.02562 * 10 8 6 13 13 C 1.53512 * 114.17227 * 240.00285 * 12 10 8 14 14 N 1.47475 * 87.93328 * 220.32608 * 13 12 10 15 15 C 1.46905 * 111.00205 * 138.70015 * 14 13 12 16 16 C 1.50706 * 109.46943 * 170.00138 * 15 14 13 17 17 O 1.21292 * 120.00254 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99766 * 179.97438 * 16 15 14 19 19 C 1.37095 * 119.99970 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99992 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99671 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99798 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00536 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47326 * 270.00539 * 23 21 19 25 25 H 1.48506 * 109.46545 * 30.00289 * 23 21 19 26 26 H 1.48498 * 109.47210 * 150.00000 * 23 21 19 27 27 C 1.47486 * 87.83807 * 27.01123 * 14 13 12 28 28 C 1.54097 * 107.29136 * 26.51183 * 6 5 4 29 29 H 1.09005 * 109.47218 * 297.82712 * 1 2 3 30 30 H 1.09001 * 109.47284 * 57.83112 * 1 2 3 31 31 H 1.09002 * 109.46955 * 177.83068 * 1 2 3 32 32 H 1.08997 * 110.62254 * 36.75610 * 4 2 1 33 33 H 1.09004 * 110.75423 * 273.82386 * 4 2 1 34 34 H 1.08990 * 109.47534 * 270.00056 * 11 10 8 35 35 H 1.09006 * 109.47127 * 30.00287 * 11 10 8 36 36 H 1.09000 * 109.46667 * 150.00050 * 11 10 8 37 37 H 1.09002 * 113.38205 * 13.08075 * 12 10 8 38 38 H 1.08994 * 113.47881 * 105.56083 * 13 12 10 39 39 H 1.09001 * 113.47249 * 335.08944 * 13 12 10 40 40 H 1.08996 * 109.46646 * 50.00395 * 15 14 13 41 41 H 1.09000 * 109.46710 * 290.00016 * 15 14 13 42 42 H 0.97004 * 119.99528 * 0.02562 * 18 16 15 43 43 H 0.96996 * 120.00340 * 179.97438 * 22 21 19 44 44 H 1.08997 * 113.47757 * 87.75363 * 27 14 13 45 45 H 1.09000 * 113.47744 * 218.22622 * 27 14 13 46 46 H 1.08998 * 110.48927 * 116.64914 * 28 6 5 47 47 H 1.08998 * 110.48809 * 239.29364 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0831 -0.8018 1.2057 5 8 3.3944 -1.2134 0.7634 6 6 3.2727 -1.5875 -0.6192 7 1 3.0866 -2.6586 -0.6982 8 6 4.5359 -1.2311 -1.3595 9 8 5.4318 -0.6492 -0.7853 10 7 4.6702 -1.5588 -2.6599 11 6 3.5883 -2.2622 -3.3535 12 6 5.8984 -1.2128 -3.3796 13 6 5.6805 -0.2920 -4.5884 14 7 6.6785 -1.0986 -5.3152 15 6 6.2558 -1.3346 -6.7022 16 6 7.3958 -1.9424 -7.4782 17 8 8.4559 -2.1583 -6.9297 18 7 7.2370 -2.2471 -8.7814 19 6 8.2742 -2.7995 -9.4876 20 1 9.2183 -2.9910 -8.9994 21 6 8.1105 -3.1131 -10.8313 22 7 9.1045 -3.6432 -11.5080 23 14 6.4773 -2.7827 -11.6755 24 1 5.6030 -3.9760 -11.5464 25 1 5.8180 -1.6147 -11.0379 26 1 6.7125 -2.4945 -13.1131 27 6 6.3089 -2.2341 -4.4497 28 6 2.0832 -0.8013 -1.2035 29 1 -0.3634 0.4797 0.9089 30 1 -0.3634 0.5471 -0.8699 31 1 -0.3633 -1.0270 -0.0389 32 1 1.4566 -1.6702 1.4091 33 1 2.1574 -0.1681 2.0895 34 1 3.7329 -3.3380 -3.2557 35 1 2.6316 -1.9826 -2.9122 36 1 3.5953 -1.9891 -4.4087 37 1 6.7116 -0.9027 -2.7233 38 1 5.9971 0.7362 -4.4137 39 1 4.6776 -0.3592 -5.0101 40 1 5.9682 -0.3883 -7.1602 41 1 5.4054 -2.0163 -6.7118 42 1 6.3891 -2.0747 -9.2199 43 1 8.9903 -3.8624 -12.4460 44 1 5.4738 -2.8194 -4.8343 45 1 7.1581 -2.8517 -4.1573 46 1 2.4216 -0.1252 -1.9887 47 1 1.3258 -1.4847 -1.5874 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499707025.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:18 Heat of formation + Delta-G solvation = -55.364378 kcal Electronic energy + Delta-G solvation = -27879.067581 eV Core-core repulsion = 23871.127729 eV Total energy + Delta-G solvation = -4007.939852 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.24473 -40.21388 -38.60033 -37.83947 -35.39466 -34.03924 -33.92798 -31.72212 -31.26564 -29.76885 -27.44644 -26.85038 -26.05071 -25.75297 -24.29459 -23.05508 -21.22381 -20.50686 -19.51402 -19.19928 -18.36930 -17.65504 -17.12350 -16.51781 -16.14130 -16.04147 -15.78524 -15.48500 -14.90848 -14.73231 -14.54317 -14.45452 -14.16129 -13.58647 -13.51608 -13.39597 -13.17006 -12.99852 -12.75390 -12.72521 -12.65848 -12.45544 -12.19056 -12.07047 -11.86799 -11.70189 -11.32300 -11.28511 -11.22371 -10.98551 -10.82070 -10.61512 -10.46907 -9.97950 -9.74698 -9.57004 -8.95905 -8.90207 -8.36139 -8.18026 -6.30970 -3.82434 2.27137 2.41641 3.00332 3.04076 3.13096 3.45191 3.72715 3.82504 3.94736 4.07748 4.09555 4.21346 4.29683 4.35562 4.59527 4.61186 4.67844 4.72226 4.78224 4.89840 4.98752 5.01314 5.09088 5.09460 5.17126 5.18372 5.21063 5.23821 5.30959 5.42976 5.45826 5.46504 5.52171 5.64230 5.66552 5.78632 5.89870 5.95428 6.13108 6.34549 6.37112 6.96017 7.06865 7.57840 7.89022 8.14285 8.60373 8.95655 9.42228 9.83988 10.82312 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.027087 B = 0.002204 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.469936 B =12699.137462 C =13351.318857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 H 0.089 0.911 4 C 0.048 3.952 5 O -0.347 6.347 6 C 0.063 3.937 7 H 0.095 0.905 8 C 0.515 3.485 9 O -0.514 6.514 10 N -0.603 5.603 11 C 0.062 3.938 12 C 0.119 3.881 13 C -0.018 4.018 14 N -0.433 5.433 15 C 0.009 3.991 16 C 0.455 3.545 17 O -0.554 6.554 18 N -0.594 5.594 19 C -0.303 4.303 20 H 0.119 0.881 21 C 0.040 3.960 22 N -0.882 5.882 23 Si 0.880 3.120 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.277 1.277 27 C -0.006 4.006 28 C -0.144 4.144 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.134 0.866 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.369 0.631 43 H 0.273 0.727 44 H 0.073 0.927 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.318 5.248 20.182 32.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 H 0.107 0.893 4 C -0.029 4.029 5 O -0.264 6.264 6 C 0.001 3.999 7 H 0.113 0.887 8 C 0.301 3.699 9 O -0.388 6.388 10 N -0.338 5.338 11 C -0.081 4.081 12 C 0.016 3.984 13 C -0.149 4.149 14 N -0.155 5.155 15 C -0.123 4.123 16 C 0.240 3.760 17 O -0.434 6.434 18 N -0.234 5.234 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.163 4.163 22 N -0.522 5.522 23 Si 0.707 3.293 24 H -0.197 1.197 25 H -0.196 1.196 26 H -0.202 1.202 27 C -0.135 4.135 28 C -0.182 4.182 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.152 0.848 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.202 0.798 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.115 0.885 46 H 0.103 0.897 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.107 5.540 20.711 30.795 hybrid contribution -2.368 -0.172 -1.358 2.735 sum -24.475 5.368 19.353 31.660 Atomic orbital electron populations 1.21729 0.93407 1.02322 1.02503 1.22760 0.96820 1.00594 0.94367 0.89262 1.23737 0.83898 0.97784 0.97460 1.89030 1.29086 1.86185 1.22122 1.22628 0.93242 1.00046 0.83977 0.88739 1.20486 0.88688 0.79139 0.81541 1.90736 1.41555 1.39760 1.66737 1.47752 1.17689 1.58359 1.10017 1.22053 0.90004 0.97335 0.98718 1.22800 0.87311 0.96316 0.92020 1.24405 0.95897 1.00475 0.94088 1.68789 1.38931 1.07758 1.00027 1.22533 0.96910 1.01387 0.91517 1.19536 0.89450 0.84479 0.82554 1.90580 1.27939 1.56060 1.68866 1.42214 1.14148 1.57737 1.09306 1.19428 0.94604 1.36517 0.92669 0.86292 1.25040 0.97625 0.97406 0.96198 1.69621 1.30897 1.42029 1.09667 0.86666 0.83733 0.78700 0.80228 1.19711 1.19564 1.20176 1.24378 1.00992 0.95337 0.92817 1.23089 0.96530 0.99474 0.99116 0.91995 0.91990 0.92186 0.91702 0.88467 0.91850 0.90286 0.90594 0.84819 0.88957 0.91233 0.89127 0.92233 0.79837 0.91637 0.90898 0.88495 0.89718 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.49 9.19 37.16 0.34 -0.14 16 2 C -0.13 -0.69 3.72 -88.61 -0.33 -1.02 16 3 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 4 C 0.05 0.31 7.17 38.21 0.27 0.59 16 5 O -0.35 -3.78 10.74 -54.80 -0.59 -4.37 16 6 C 0.06 0.54 3.04 -27.31 -0.08 0.45 16 7 H 0.10 0.63 7.99 -51.93 -0.42 0.21 16 8 C 0.51 6.11 6.86 -10.99 -0.08 6.03 16 9 O -0.51 -8.51 16.04 -14.01 -0.22 -8.73 16 10 N -0.60 -5.99 3.11 -173.62 -0.54 -6.53 16 11 C 0.06 0.38 8.69 59.85 0.52 0.90 16 12 C 0.12 1.45 4.54 -67.72 -0.31 1.15 16 13 C -0.02 -0.22 7.24 -7.54 -0.05 -0.27 16 14 N -0.43 -6.85 5.82 -246.08 -1.43 -8.28 16 15 C 0.01 0.14 5.30 -4.97 -0.03 0.12 16 16 C 0.45 10.39 7.85 -10.98 -0.09 10.30 16 17 O -0.55 -15.25 16.01 5.55 0.09 -15.16 16 18 N -0.59 -14.10 5.09 -10.96 -0.06 -14.16 16 19 C -0.30 -8.61 10.16 -14.93 -0.15 -8.76 16 20 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 21 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 22 N -0.88 -25.81 13.96 55.50 0.77 -25.04 16 23 Si 0.88 19.18 27.74 -169.99 -4.72 14.46 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.27 -5.33 6.52 56.52 0.37 -4.97 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 C -0.01 -0.07 7.13 -7.53 -0.05 -0.13 16 28 C -0.14 -0.80 4.29 -25.21 -0.11 -0.91 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.17 8.11 -51.93 -0.42 -0.25 16 32 H 0.06 0.32 8.05 -51.93 -0.42 -0.10 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.31 4.44 -51.93 -0.23 0.08 16 36 H 0.08 0.44 6.19 -51.93 -0.32 0.12 16 37 H 0.13 1.92 7.29 -51.93 -0.38 1.54 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.07 0.66 6.74 -51.93 -0.35 0.31 16 40 H 0.09 1.29 8.08 -51.93 -0.42 0.87 16 41 H 0.06 0.79 7.30 -51.93 -0.38 0.41 16 42 H 0.37 7.60 5.76 -40.82 -0.24 7.36 16 43 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 44 H 0.07 0.83 5.84 -51.93 -0.30 0.53 16 45 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 46 H 0.08 0.51 7.44 -51.93 -0.39 0.12 16 47 H 0.09 0.28 7.24 -51.93 -0.38 -0.09 16 LS Contribution 373.08 15.07 5.62 5.62 Total: -1.00 -37.32 373.08 -8.46 -45.78 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -7.15 Total: 7.11 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -0.24 Total: 9.31 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -1.25 Total: -54.02 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.72 Total: -28.27 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.72 Total: 14.46 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.32 -8.46 -45.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499707025.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.584 kcal (2) G-P(sol) polarization free energy of solvation -37.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds