Wall clock time and date at job start Fri Apr 10 2020 18:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.80409 * 2 1 4 4 C 1.54997 * 110.90625 * 123.62404 * 2 1 3 5 5 O 1.44380 * 103.49157 * 155.25789 * 4 2 1 6 6 C 1.43750 * 106.97403 * 319.94016 * 5 4 2 7 7 H 1.09002 * 109.87585 * 266.94240 * 6 5 4 8 8 C 1.50692 * 109.87893 * 145.93683 * 6 5 4 9 9 O 1.21281 * 120.00534 * 356.45321 * 8 6 5 10 10 N 1.34777 * 120.00355 * 176.45310 * 8 6 5 11 11 C 1.46507 * 119.99467 * 359.97438 * 10 8 6 12 12 C 1.46494 * 120.00677 * 180.02562 * 10 8 6 13 13 C 1.53512 * 114.17227 * 240.00285 * 12 10 8 14 14 N 1.47475 * 87.93328 * 220.32608 * 13 12 10 15 15 C 1.46905 * 111.00205 * 138.70015 * 14 13 12 16 16 C 1.50706 * 109.46943 * 170.00138 * 15 14 13 17 17 O 1.21292 * 120.00254 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99766 * 179.97438 * 16 15 14 19 19 C 1.37095 * 119.99970 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99992 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99671 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99798 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00536 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47326 * 270.00539 * 23 21 19 25 25 H 1.48506 * 109.46545 * 30.00289 * 23 21 19 26 26 H 1.48498 * 109.47210 * 150.00000 * 23 21 19 27 27 C 1.47486 * 87.83807 * 27.01123 * 14 13 12 28 28 C 1.54097 * 107.29136 * 26.51183 * 6 5 4 29 29 H 1.09005 * 109.47218 * 297.82712 * 1 2 3 30 30 H 1.09001 * 109.47284 * 57.83112 * 1 2 3 31 31 H 1.09002 * 109.46955 * 177.83068 * 1 2 3 32 32 H 1.08997 * 110.62254 * 36.75610 * 4 2 1 33 33 H 1.09004 * 110.75423 * 273.82386 * 4 2 1 34 34 H 1.08990 * 109.47534 * 270.00056 * 11 10 8 35 35 H 1.09006 * 109.47127 * 30.00287 * 11 10 8 36 36 H 1.09000 * 109.46667 * 150.00050 * 11 10 8 37 37 H 1.09002 * 113.38205 * 13.08075 * 12 10 8 38 38 H 1.08994 * 113.47881 * 105.56083 * 13 12 10 39 39 H 1.09001 * 113.47249 * 335.08944 * 13 12 10 40 40 H 1.08996 * 109.46646 * 50.00395 * 15 14 13 41 41 H 1.09000 * 109.46710 * 290.00016 * 15 14 13 42 42 H 0.97004 * 119.99528 * 0.02562 * 18 16 15 43 43 H 0.96996 * 120.00340 * 179.97438 * 22 21 19 44 44 H 1.08997 * 113.47757 * 87.75363 * 27 14 13 45 45 H 1.09000 * 113.47744 * 218.22622 * 27 14 13 46 46 H 1.08998 * 110.48927 * 116.64914 * 28 6 5 47 47 H 1.08998 * 110.48809 * 239.29364 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0831 -0.8018 1.2057 5 8 3.3944 -1.2134 0.7634 6 6 3.2727 -1.5875 -0.6192 7 1 3.0866 -2.6586 -0.6982 8 6 4.5359 -1.2311 -1.3595 9 8 5.4318 -0.6492 -0.7853 10 7 4.6702 -1.5588 -2.6599 11 6 3.5883 -2.2622 -3.3535 12 6 5.8984 -1.2128 -3.3796 13 6 5.6805 -0.2920 -4.5884 14 7 6.6785 -1.0986 -5.3152 15 6 6.2558 -1.3346 -6.7022 16 6 7.3958 -1.9424 -7.4782 17 8 8.4559 -2.1583 -6.9297 18 7 7.2370 -2.2471 -8.7814 19 6 8.2742 -2.7995 -9.4876 20 1 9.2183 -2.9910 -8.9994 21 6 8.1105 -3.1131 -10.8313 22 7 9.1045 -3.6432 -11.5080 23 14 6.4773 -2.7827 -11.6755 24 1 5.6030 -3.9760 -11.5464 25 1 5.8180 -1.6147 -11.0379 26 1 6.7125 -2.4945 -13.1131 27 6 6.3089 -2.2341 -4.4497 28 6 2.0832 -0.8013 -1.2035 29 1 -0.3634 0.4797 0.9089 30 1 -0.3634 0.5471 -0.8699 31 1 -0.3633 -1.0270 -0.0389 32 1 1.4566 -1.6702 1.4091 33 1 2.1574 -0.1681 2.0895 34 1 3.7329 -3.3380 -3.2557 35 1 2.6316 -1.9826 -2.9122 36 1 3.5953 -1.9891 -4.4087 37 1 6.7116 -0.9027 -2.7233 38 1 5.9971 0.7362 -4.4137 39 1 4.6776 -0.3592 -5.0101 40 1 5.9682 -0.3883 -7.1602 41 1 5.4054 -2.0163 -6.7118 42 1 6.3891 -2.0747 -9.2199 43 1 8.9903 -3.8624 -12.4460 44 1 5.4738 -2.8194 -4.8343 45 1 7.1581 -2.8517 -4.1573 46 1 2.4216 -0.1252 -1.9887 47 1 1.3258 -1.4847 -1.5874 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499707025.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:18 Heat of formation + Delta-G solvation = -86.664575 kcal Electronic energy + Delta-G solvation = -27880.424859 eV Core-core repulsion = 23871.127729 eV Total energy + Delta-G solvation = -4009.297130 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.13156 -41.09771 -39.92464 -39.14157 -36.31521 -35.92724 -34.51290 -33.76246 -32.18655 -30.72231 -28.12175 -27.46278 -27.16522 -26.91059 -25.50452 -24.05764 -21.64066 -21.50498 -21.18715 -20.40438 -19.99865 -18.42476 -18.01544 -17.79041 -17.13844 -16.91971 -16.76484 -16.63095 -16.33532 -15.83235 -15.52726 -15.33157 -15.04077 -14.80154 -14.74390 -14.47544 -14.09850 -14.02770 -13.87012 -13.66265 -13.64016 -13.33200 -13.09604 -12.98415 -12.81087 -12.59438 -12.41043 -12.25895 -12.07923 -11.94509 -11.94225 -11.76431 -11.62923 -11.49664 -11.09978 -10.54210 -10.47118 -10.24378 -9.80684 -9.73049 -8.40414 -6.01994 1.30543 1.36929 1.42605 1.46229 1.64192 1.97100 2.24422 2.65756 2.93393 3.14917 3.22498 3.29793 3.39647 3.55913 3.67519 3.79991 3.86630 4.04479 4.08987 4.16578 4.21282 4.25317 4.31553 4.35964 4.43933 4.54179 4.56844 4.65098 4.69813 4.74850 4.77616 4.79447 4.90558 4.92339 4.93423 5.10638 5.24956 5.28300 5.33972 5.40385 5.54204 5.77768 5.88795 5.99771 6.28556 6.60564 6.89422 7.05163 7.40569 7.99582 8.77563 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.027087 B = 0.002204 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.469936 B =12699.137462 C =13351.318857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.124 4.124 3 H 0.072 0.928 4 C 0.041 3.959 5 O -0.389 6.389 6 C 0.063 3.937 7 H 0.120 0.880 8 C 0.506 3.494 9 O -0.577 6.577 10 N -0.594 5.594 11 C 0.050 3.950 12 C 0.124 3.876 13 C -0.001 4.001 14 N -0.479 5.479 15 C 0.023 3.977 16 C 0.450 3.550 17 O -0.613 6.613 18 N -0.591 5.591 19 C -0.329 4.329 20 H 0.050 0.950 21 C -0.019 4.019 22 N -0.937 5.937 23 Si 0.969 3.031 24 H -0.254 1.254 25 H -0.228 1.228 26 H -0.277 1.277 27 C -0.002 4.002 28 C -0.138 4.138 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.122 0.878 41 H 0.104 0.896 42 H 0.391 0.609 43 H 0.279 0.721 44 H 0.104 0.896 45 H 0.063 0.937 46 H 0.082 0.918 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.465 5.680 19.268 36.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.143 4.143 3 H 0.090 0.910 4 C -0.035 4.035 5 O -0.308 6.308 6 C 0.002 3.998 7 H 0.137 0.863 8 C 0.295 3.705 9 O -0.456 6.456 10 N -0.328 5.328 11 C -0.091 4.091 12 C 0.019 3.981 13 C -0.130 4.130 14 N -0.202 5.202 15 C -0.109 4.109 16 C 0.238 3.762 17 O -0.497 6.497 18 N -0.234 5.234 19 C -0.458 4.458 20 H 0.068 0.932 21 C -0.217 4.217 22 N -0.578 5.578 23 Si 0.789 3.211 24 H -0.178 1.178 25 H -0.151 1.151 26 H -0.202 1.202 27 C -0.132 4.132 28 C -0.175 4.175 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.125 0.875 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.127 0.873 40 H 0.140 0.860 41 H 0.122 0.878 42 H 0.227 0.773 43 H 0.088 0.912 44 H 0.122 0.878 45 H 0.082 0.918 46 H 0.100 0.900 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -28.312 5.968 19.798 35.059 hybrid contribution -0.301 -0.347 -0.965 1.069 sum -28.613 5.621 18.833 34.713 Atomic orbital electron populations 1.21702 0.91436 1.03320 1.02924 1.22727 0.98274 0.99485 0.93839 0.90954 1.23968 0.82686 0.98846 0.97975 1.88992 1.31712 1.86621 1.23481 1.22815 0.92254 1.01722 0.82968 0.86313 1.21292 0.89227 0.78069 0.81928 1.90704 1.43876 1.42803 1.68191 1.47778 1.17606 1.57790 1.09591 1.22436 0.89648 0.97632 0.99355 1.22381 0.87808 0.96268 0.91684 1.24372 0.96717 0.99443 0.92460 1.68698 1.41618 1.09532 1.00335 1.22480 0.94483 1.03155 0.90760 1.20951 0.90556 0.82477 0.82233 1.90560 1.31133 1.57936 1.70066 1.42013 1.13809 1.57848 1.09690 1.18978 0.94051 1.39049 0.93766 0.93175 1.26202 1.03222 0.96021 0.96296 1.69819 1.34421 1.43113 1.10402 0.85307 0.77006 0.80592 0.78213 1.17807 1.15136 1.20248 1.24389 1.00730 0.95050 0.92999 1.23150 0.95851 0.99718 0.98783 0.91799 0.91430 0.90843 0.89604 0.88568 0.90771 0.87510 0.89098 0.88349 0.89306 0.87304 0.86042 0.87801 0.77346 0.91168 0.87800 0.91836 0.89973 0.85551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.46 9.19 71.98 0.66 0.20 16 2 C -0.12 -1.07 3.72 -9.49 -0.04 -1.10 16 3 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 4 C 0.04 0.48 7.17 72.67 0.52 1.00 16 5 O -0.39 -8.36 10.74 -130.27 -1.40 -9.75 16 6 C 0.06 0.96 3.04 30.22 0.09 1.06 16 7 H 0.12 1.19 7.99 -2.39 -0.02 1.17 16 8 C 0.51 11.77 6.86 87.65 0.60 12.37 16 9 O -0.58 -20.17 16.04 15.67 0.25 -19.92 16 10 N -0.59 -10.65 3.11 -821.60 -2.56 -13.20 16 11 C 0.05 0.38 8.69 127.77 1.11 1.49 16 12 C 0.12 2.94 4.54 45.45 0.21 3.15 16 13 C 0.00 -0.01 7.24 83.58 0.61 0.59 16 14 N -0.48 -14.44 5.82 -932.46 -5.43 -19.87 16 15 C 0.02 0.66 5.30 85.56 0.45 1.11 16 16 C 0.45 20.39 7.85 87.66 0.69 21.08 16 17 O -0.61 -35.35 16.01 -3.07 -0.05 -35.40 16 18 N -0.59 -27.55 5.09 -306.98 -1.56 -29.11 16 19 C -0.33 -19.39 10.16 84.04 0.85 -18.54 16 20 H 0.05 3.56 7.39 -2.91 -0.02 3.54 16 21 C -0.02 -1.06 5.50 84.93 0.47 -0.60 16 22 N -0.94 -56.74 13.96 21.66 0.30 -56.44 16 23 Si 0.97 37.84 27.74 68.60 1.90 39.74 16 24 H -0.25 -9.22 7.11 99.48 0.71 -8.52 16 25 H -0.23 -7.32 6.52 99.48 0.65 -6.67 16 26 H -0.28 -10.85 7.11 99.48 0.71 -10.15 16 27 C 0.00 -0.05 7.13 83.58 0.60 0.54 16 28 C -0.14 -1.03 4.29 31.58 0.14 -0.90 16 29 H 0.06 0.21 8.14 -2.38 -0.02 0.19 16 30 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.07 0.08 8.11 -2.39 -0.02 0.06 16 32 H 0.09 0.61 8.05 -2.39 -0.02 0.59 16 33 H 0.10 1.05 8.14 -2.38 -0.02 1.04 16 34 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.11 0.24 4.44 -2.38 -0.01 0.23 16 36 H 0.09 0.47 6.19 -2.39 -0.01 0.46 16 37 H 0.10 3.06 7.29 -2.39 -0.02 3.04 16 38 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.11 1.43 6.74 -2.39 -0.02 1.41 16 40 H 0.12 2.80 8.08 -2.39 -0.02 2.78 16 41 H 0.10 2.11 7.30 -2.39 -0.02 2.09 16 42 H 0.39 14.60 5.76 -92.71 -0.53 14.07 16 43 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.10 2.00 5.84 -2.39 -0.01 1.98 16 45 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.08 0.70 7.44 -2.39 -0.02 0.68 16 47 H 0.13 0.05 7.24 -2.39 -0.02 0.03 16 Total: -1.00 -93.27 373.08 -1.18 -94.46 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 0.40 Total: 28.04 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: 6.96 Total: 21.46 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -9.25 Total: -118.62 kcal Atomic # 8 Polarization: -63.87 SS G_CDS: -1.20 Total: -65.07 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 1.90 Total: 39.74 kcal Total: -93.27 -1.18 -94.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499707025.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.792 kcal (2) G-P(sol) polarization free energy of solvation -93.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds