Wall clock time and date at job start Fri Apr 10 2020 18:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46899 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.46904 * 111.00029 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.46800 * 180.02562 * 7 6 5 9 9 O 1.21289 * 120.00338 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99855 * 180.02562 * 8 7 6 11 11 C 1.37091 * 120.00193 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00238 * 359.97438 * 11 10 8 13 13 C 1.38951 * 120.00205 * 180.02562 * 11 10 8 14 14 N 1.31415 * 119.99909 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00181 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47201 * 59.99764 * 15 13 11 17 17 H 1.48506 * 109.47027 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47090 * 299.99421 * 15 13 11 19 19 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 20 20 C 1.34773 * 120.00306 * 84.99801 * 19 2 1 21 21 O 1.21745 * 120.00101 * 0.02562 * 20 19 2 22 22 C 1.41791 * 120.00630 * 180.02562 * 20 19 2 23 23 C 1.33451 * 118.79333 * 179.73694 * 22 20 19 24 24 O 1.34359 * 123.08492 * 180.11575 * 23 22 20 25 25 C 1.45357 * 117.54072 * 344.21138 * 24 23 22 26 26 C 1.53485 * 108.26325 * 47.23010 * 25 24 23 27 27 C 1.50420 * 118.78504 * 0.02562 * 22 20 19 28 28 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 30 30 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 31 31 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 32 32 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 35 35 H 1.00902 * 111.00582 * 303.95797 * 6 5 4 36 36 H 1.08995 * 109.47167 * 300.00240 * 7 6 5 37 37 H 1.09003 * 109.46442 * 60.00214 * 7 6 5 38 38 H 0.97000 * 119.99567 * 0.02562 * 10 8 7 39 39 H 0.96998 * 120.00315 * 179.97438 * 14 13 11 40 40 H 0.97003 * 120.00235 * 265.00555 * 19 2 1 41 41 H 1.07998 * 118.46182 * 0.38927 * 23 22 20 42 42 H 1.09000 * 109.70527 * 287.53822 * 25 24 23 43 43 H 1.08992 * 109.73635 * 166.94060 * 25 24 23 44 44 H 1.09000 * 109.70251 * 177.60550 * 26 25 24 45 45 H 1.08997 * 109.70661 * 56.98068 * 26 25 24 46 46 H 1.09007 * 109.45713 * 282.36084 * 27 22 20 47 47 H 1.09002 * 109.45815 * 42.31886 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0545 -1.3056 2.5131 7 6 5.5181 -1.2231 2.6080 8 6 5.9824 -1.9431 3.8477 9 8 5.1738 -2.4732 4.5799 10 7 7.2964 -1.9979 4.1429 11 6 7.7189 -2.6534 5.2704 12 1 6.9989 -3.1255 5.9224 13 6 9.0735 -2.7095 5.5750 14 7 9.9496 -2.1347 4.7819 15 14 9.6491 -3.6020 7.1117 16 1 9.2383 -5.0271 7.0396 17 1 11.1287 -3.5180 7.2079 18 1 9.0382 -2.9706 8.3089 19 7 2.0183 -0.6905 -1.1963 20 6 2.1470 -0.0181 -2.3572 21 8 1.8579 1.1633 -2.4117 22 6 2.6190 -0.6864 -3.5152 23 6 2.7321 0.0015 -4.6531 24 8 3.1673 -0.5454 -5.8006 25 6 3.8510 -1.8255 -5.7181 26 6 3.0229 -2.7562 -4.8215 27 6 2.9678 -2.1463 -3.4173 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 1.7516 -1.7716 1.2053 32 1 1.6054 -0.2620 2.1368 33 1 3.8532 0.4368 1.3572 34 1 3.9994 -1.0729 0.4257 35 1 3.6167 -0.9402 3.3456 36 1 5.9659 -1.6874 1.7294 37 1 5.8203 -0.1771 2.6601 38 1 7.9430 -1.5736 3.5575 39 1 10.8952 -2.1735 4.9947 40 1 2.2489 -1.6317 -1.1529 41 1 2.4652 1.0480 -4.6506 42 1 4.8422 -1.6857 -5.2867 43 1 3.9414 -2.2593 -6.7139 44 1 3.4933 -3.7385 -4.7776 45 1 2.0131 -2.8490 -5.2213 46 1 3.9395 -2.2561 -2.9358 47 1 2.2100 -2.6619 -2.8272 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668000645.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:04 Heat of formation + Delta-G solvation = -108.951802 kcal Electronic energy + Delta-G solvation = -27007.509259 eV Core-core repulsion = 22997.245682 eV Total energy + Delta-G solvation = -4010.263577 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.98028 -39.53964 -38.31465 -36.91834 -35.01096 -34.64216 -33.81648 -32.21006 -31.34269 -31.12270 -29.20950 -26.25456 -26.18274 -24.87646 -24.04041 -22.41710 -21.79370 -20.84250 -19.36830 -19.17022 -18.22803 -17.87404 -16.86684 -16.40596 -16.16108 -15.92538 -15.50392 -15.27273 -15.06301 -14.58142 -14.44180 -14.33250 -13.96560 -13.78366 -13.71273 -13.65771 -13.47966 -13.09799 -13.06219 -12.61459 -12.25918 -12.20132 -11.79524 -11.64108 -11.50205 -11.39120 -11.24290 -11.21517 -11.12328 -11.01540 -10.87033 -10.44782 -10.21791 -10.00401 -9.50597 -9.25792 -8.82308 -8.46923 -8.06404 -7.96404 -6.42101 -3.83052 1.10202 2.75963 3.18163 3.19659 3.20854 3.25284 3.29707 3.90426 4.05192 4.17099 4.24245 4.27478 4.41546 4.70801 4.76921 4.82649 4.87141 4.96098 4.99157 5.05849 5.14568 5.16328 5.24442 5.34115 5.37310 5.41837 5.55279 5.57900 5.62648 5.64677 5.70641 5.80912 5.85245 5.94729 5.97050 6.01895 6.11711 6.26866 6.41490 6.80991 7.21129 7.41011 7.54493 7.66142 8.05650 8.13446 8.60886 9.17251 9.53839 10.05377 10.75619 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.014530 B = 0.002113 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.576860 B =13250.960137 C =14566.497086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.088 0.912 4 C -0.125 4.125 5 C 0.060 3.940 6 N -0.670 5.670 7 C 0.051 3.949 8 C 0.441 3.559 9 O -0.584 6.584 10 N -0.564 5.564 11 C -0.300 4.300 12 H 0.102 0.898 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.274 1.274 19 N -0.722 5.722 20 C 0.574 3.426 21 O -0.563 6.563 22 C -0.319 4.319 23 C 0.160 3.840 24 O -0.312 6.312 25 C 0.052 3.948 26 C -0.157 4.157 27 C -0.075 4.075 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.026 0.974 34 H 0.069 0.931 35 H 0.349 0.651 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.400 0.600 41 H 0.180 0.820 42 H 0.076 0.924 43 H 0.109 0.891 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.056 2.228 -21.148 25.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.106 0.894 4 C -0.164 4.164 5 C -0.070 4.070 6 N -0.302 5.302 7 C -0.082 4.082 8 C 0.226 3.774 9 O -0.468 6.468 10 N -0.200 5.200 11 C -0.430 4.430 12 H 0.120 0.880 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.758 3.242 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 N -0.374 5.374 20 C 0.365 3.635 21 O -0.445 6.445 22 C -0.324 4.324 23 C 0.092 3.908 24 O -0.222 6.222 25 C -0.022 4.022 26 C -0.194 4.194 27 C -0.112 4.112 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.168 0.832 36 H 0.103 0.897 37 H 0.061 0.939 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.236 0.764 41 H 0.196 0.804 42 H 0.094 0.906 43 H 0.127 0.873 44 H 0.107 0.893 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.575 2.142 -21.156 25.780 hybrid contribution 1.138 0.090 0.900 1.454 sum -13.436 2.233 -20.255 24.409 Atomic orbital electron populations 1.22153 0.95197 1.02127 1.02464 1.20939 0.93942 0.97551 0.83711 0.89427 1.21873 0.95606 1.01935 0.96948 1.21953 0.94549 0.96159 0.94339 1.60083 1.04916 1.59946 1.05270 1.21661 0.88953 0.98749 0.98829 1.19815 0.83401 0.86129 0.88043 1.90517 1.53403 1.50508 1.52363 1.41863 1.05444 1.48875 1.23857 1.19656 0.91976 1.30297 1.01023 0.87971 1.25268 0.95618 0.97810 0.99259 1.69605 1.02574 1.44245 1.37951 0.85912 0.77241 0.79803 0.81228 1.19875 1.20975 1.19901 1.46040 1.67581 1.14109 1.09662 1.16558 0.77306 0.86364 0.83276 1.90803 1.52366 1.15822 1.85496 1.20048 1.18423 0.97882 0.96015 1.22991 0.86883 0.97322 0.83597 1.86273 1.69429 1.36771 1.29742 1.23589 0.95136 0.81378 1.02144 1.22184 1.01762 0.99675 0.95804 1.20280 1.02491 0.91177 0.97284 0.92453 0.91581 0.92181 0.90307 0.90239 0.95543 0.91239 0.83197 0.89743 0.93924 0.77461 0.91811 0.76429 0.80361 0.90590 0.87276 0.89301 0.90366 0.90420 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.48 37.16 0.35 -1.08 16 2 C 0.14 1.40 2.57 -67.93 -0.17 1.23 16 3 H 0.09 1.01 7.58 -51.93 -0.39 0.61 16 4 C -0.13 -1.24 5.01 -26.74 -0.13 -1.38 16 5 C 0.06 0.73 5.57 -3.83 -0.02 0.71 16 6 N -0.67 -10.71 6.12 -115.06 -0.70 -11.42 16 7 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 8 C 0.44 10.48 7.82 -10.99 -0.09 10.39 16 9 O -0.58 -15.91 15.78 5.55 0.09 -15.82 16 10 N -0.56 -14.39 5.29 -10.97 -0.06 -14.44 16 11 C -0.30 -8.40 9.68 -14.94 -0.14 -8.55 16 12 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 14 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 15 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 N -0.72 -6.78 4.44 -56.66 -0.25 -7.04 16 20 C 0.57 6.41 7.50 -14.90 -0.11 6.30 16 21 O -0.56 -8.13 15.58 5.15 0.08 -8.05 16 22 C -0.32 -2.87 5.70 -105.08 -0.60 -3.47 16 23 C 0.16 1.40 10.47 29.06 0.30 1.71 16 24 O -0.31 -2.50 10.47 -14.91 -0.16 -2.66 16 25 C 0.05 0.27 7.16 37.41 0.27 0.54 16 26 C -0.16 -0.79 6.23 -26.38 -0.16 -0.96 16 27 C -0.08 -0.49 5.08 -27.92 -0.14 -0.63 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.83 7.75 -51.93 -0.40 0.42 16 35 H 0.35 5.75 8.43 -39.29 -0.33 5.42 16 36 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 39 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.40 3.11 6.71 -40.82 -0.27 2.84 16 41 H 0.18 1.56 7.21 -52.49 -0.38 1.19 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 47 H 0.08 0.46 7.15 -51.93 -0.37 0.09 16 LS Contribution 389.59 15.07 5.87 5.87 Total: -1.00 -33.74 389.59 -7.69 -41.43 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -7.48 Total: 13.81 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -0.78 Total: 6.18 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.29 Total: -56.79 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: 0.01 Total: -26.53 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.74 -7.69 -41.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668000645.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.526 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds