Wall clock time and date at job start Fri Apr 10 2020 18:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46899 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.46904 * 111.00029 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.46800 * 180.02562 * 7 6 5 9 9 O 1.21289 * 120.00338 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99855 * 180.02562 * 8 7 6 11 11 C 1.37091 * 120.00193 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00238 * 359.97438 * 11 10 8 13 13 C 1.38951 * 120.00205 * 180.02562 * 11 10 8 14 14 N 1.31415 * 119.99909 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00181 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47201 * 59.99764 * 15 13 11 17 17 H 1.48506 * 109.47027 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47090 * 299.99421 * 15 13 11 19 19 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 20 20 C 1.34773 * 120.00306 * 84.99801 * 19 2 1 21 21 O 1.21745 * 120.00101 * 0.02562 * 20 19 2 22 22 C 1.41791 * 120.00630 * 180.02562 * 20 19 2 23 23 C 1.33451 * 118.79333 * 179.73694 * 22 20 19 24 24 O 1.34359 * 123.08492 * 180.11575 * 23 22 20 25 25 C 1.45357 * 117.54072 * 344.21138 * 24 23 22 26 26 C 1.53485 * 108.26325 * 47.23010 * 25 24 23 27 27 C 1.50420 * 118.78504 * 0.02562 * 22 20 19 28 28 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 30 30 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 31 31 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 32 32 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 35 35 H 1.00902 * 111.00582 * 303.95797 * 6 5 4 36 36 H 1.08995 * 109.47167 * 300.00240 * 7 6 5 37 37 H 1.09003 * 109.46442 * 60.00214 * 7 6 5 38 38 H 0.97000 * 119.99567 * 0.02562 * 10 8 7 39 39 H 0.96998 * 120.00315 * 179.97438 * 14 13 11 40 40 H 0.97003 * 120.00235 * 265.00555 * 19 2 1 41 41 H 1.07998 * 118.46182 * 0.38927 * 23 22 20 42 42 H 1.09000 * 109.70527 * 287.53822 * 25 24 23 43 43 H 1.08992 * 109.73635 * 166.94060 * 25 24 23 44 44 H 1.09000 * 109.70251 * 177.60550 * 26 25 24 45 45 H 1.08997 * 109.70661 * 56.98068 * 26 25 24 46 46 H 1.09007 * 109.45713 * 282.36084 * 27 22 20 47 47 H 1.09002 * 109.45815 * 42.31886 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0545 -1.3056 2.5131 7 6 5.5181 -1.2231 2.6080 8 6 5.9824 -1.9431 3.8477 9 8 5.1738 -2.4732 4.5799 10 7 7.2964 -1.9979 4.1429 11 6 7.7189 -2.6534 5.2704 12 1 6.9989 -3.1255 5.9224 13 6 9.0735 -2.7095 5.5750 14 7 9.9496 -2.1347 4.7819 15 14 9.6491 -3.6020 7.1117 16 1 9.2383 -5.0271 7.0396 17 1 11.1287 -3.5180 7.2079 18 1 9.0382 -2.9706 8.3089 19 7 2.0183 -0.6905 -1.1963 20 6 2.1470 -0.0181 -2.3572 21 8 1.8579 1.1633 -2.4117 22 6 2.6190 -0.6864 -3.5152 23 6 2.7321 0.0015 -4.6531 24 8 3.1673 -0.5454 -5.8006 25 6 3.8510 -1.8255 -5.7181 26 6 3.0229 -2.7562 -4.8215 27 6 2.9678 -2.1463 -3.4173 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 1.7516 -1.7716 1.2053 32 1 1.6054 -0.2620 2.1368 33 1 3.8532 0.4368 1.3572 34 1 3.9994 -1.0729 0.4257 35 1 3.6167 -0.9402 3.3456 36 1 5.9659 -1.6874 1.7294 37 1 5.8203 -0.1771 2.6601 38 1 7.9430 -1.5736 3.5575 39 1 10.8952 -2.1735 4.9947 40 1 2.2489 -1.6317 -1.1529 41 1 2.4652 1.0480 -4.6506 42 1 4.8422 -1.6857 -5.2867 43 1 3.9414 -2.2593 -6.7139 44 1 3.4933 -3.7385 -4.7776 45 1 2.0131 -2.8490 -5.2213 46 1 3.9395 -2.2561 -2.9358 47 1 2.2100 -2.6619 -2.8272 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668000645.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:04 Heat of formation + Delta-G solvation = -134.570305 kcal Electronic energy + Delta-G solvation = -27008.620161 eV Core-core repulsion = 22997.245682 eV Total energy + Delta-G solvation = -4011.374478 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.67576 -40.30572 -40.11549 -37.95485 -36.29416 -35.71593 -35.24625 -33.28807 -32.85987 -32.03483 -30.27136 -27.79367 -26.70695 -25.91538 -25.34308 -23.36618 -22.58279 -21.68363 -21.06658 -19.97936 -19.85571 -18.86241 -17.84905 -17.62586 -17.18849 -16.84257 -16.61353 -16.45983 -16.08443 -15.86202 -15.78640 -15.37872 -15.11051 -14.95201 -14.79019 -14.53203 -14.28957 -14.02971 -13.85025 -13.70630 -13.50403 -13.47362 -13.18181 -12.92557 -12.79480 -12.44054 -12.31538 -12.18008 -12.11979 -12.10981 -11.79889 -11.77637 -11.59914 -11.50464 -10.87096 -10.36450 -10.10435 -10.02606 -9.47337 -9.35823 -8.46994 -5.96066 0.38445 1.39990 1.41958 1.53014 2.04099 2.16770 2.28911 2.38471 2.49253 2.87817 3.20097 3.48176 3.72313 3.76284 3.94454 3.95424 4.03631 4.10604 4.21560 4.29503 4.32063 4.40063 4.43716 4.50982 4.52503 4.58815 4.62413 4.67994 4.73817 4.85491 4.90983 4.95687 5.07850 5.11049 5.18474 5.21135 5.24848 5.32243 5.40340 5.61775 5.87323 6.08455 6.20989 6.38821 6.59159 6.64757 7.11664 7.32131 7.55125 8.10115 8.70234 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.014530 B = 0.002113 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.576860 B =13250.960137 C =14566.497086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.148 3.852 3 H 0.070 0.930 4 C -0.114 4.114 5 C 0.063 3.937 6 N -0.679 5.679 7 C 0.064 3.936 8 C 0.438 3.562 9 O -0.622 6.622 10 N -0.573 5.573 11 C -0.335 4.335 12 H 0.080 0.920 13 C -0.013 4.013 14 N -0.921 5.921 15 Si 0.994 3.006 16 H -0.271 1.271 17 H -0.271 1.271 18 H -0.271 1.271 19 N -0.713 5.713 20 C 0.569 3.431 21 O -0.603 6.603 22 C -0.328 4.328 23 C 0.163 3.837 24 O -0.321 6.321 25 C 0.044 3.956 26 C -0.152 4.152 27 C -0.075 4.075 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.028 0.972 34 H 0.075 0.925 35 H 0.345 0.655 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.396 0.604 39 H 0.278 0.722 40 H 0.410 0.590 41 H 0.171 0.829 42 H 0.080 0.920 43 H 0.132 0.868 44 H 0.109 0.891 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.820 1.232 -21.778 25.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.043 3.957 3 H 0.088 0.912 4 C -0.152 4.152 5 C -0.066 4.066 6 N -0.311 5.311 7 C -0.068 4.068 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.210 5.210 11 C -0.464 4.464 12 H 0.098 0.902 13 C -0.213 4.213 14 N -0.562 5.562 15 Si 0.817 3.183 16 H -0.196 1.196 17 H -0.195 1.195 18 H -0.197 1.197 19 N -0.365 5.365 20 C 0.362 3.638 21 O -0.488 6.488 22 C -0.333 4.333 23 C 0.094 3.906 24 O -0.232 6.232 25 C -0.029 4.029 26 C -0.190 4.190 27 C -0.112 4.112 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.163 0.837 36 H 0.121 0.879 37 H 0.080 0.920 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.247 0.753 41 H 0.188 0.812 42 H 0.098 0.902 43 H 0.150 0.850 44 H 0.127 0.873 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.330 1.130 -21.812 26.123 hybrid contribution 1.038 0.416 1.032 1.522 sum -13.292 1.546 -20.780 24.716 Atomic orbital electron populations 1.22094 0.94315 1.02737 1.02216 1.20852 0.94550 0.96604 0.83711 0.91224 1.21768 0.93949 1.02289 0.97176 1.22007 0.95926 0.95836 0.92808 1.60103 1.03684 1.61021 1.06334 1.21529 0.90307 0.98946 0.96058 1.20844 0.82427 0.85085 0.89105 1.90485 1.54209 1.52013 1.54151 1.41939 1.06337 1.49177 1.23584 1.19644 0.92383 1.32106 1.02303 0.90219 1.26062 0.95168 0.98069 1.02016 1.69668 1.02971 1.44474 1.39085 0.84981 0.77292 0.78523 0.77506 1.19604 1.19514 1.19665 1.45976 1.66905 1.14478 1.09133 1.16907 0.76839 0.85948 0.84149 1.90780 1.54324 1.17587 1.86146 1.20111 1.18819 0.99213 0.95123 1.22937 0.86514 0.97196 0.83926 1.86263 1.69399 1.38164 1.29334 1.23886 0.95039 0.80275 1.03727 1.22186 1.01818 1.00375 0.94579 1.20340 1.02772 0.89562 0.98574 0.91363 0.90519 0.93754 0.89791 0.89578 0.95421 0.90624 0.83668 0.87866 0.92050 0.77008 0.91267 0.75275 0.81201 0.90161 0.85012 0.87266 0.90615 0.90130 0.89477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.48 71.98 0.68 -1.91 16 2 C 0.15 2.74 2.57 44.99 0.12 2.86 16 3 H 0.07 1.58 7.58 -2.39 -0.02 1.56 16 4 C -0.11 -2.05 5.01 30.59 0.15 -1.90 16 5 C 0.06 1.42 5.57 86.30 0.48 1.90 16 6 N -0.68 -20.72 6.12 -517.93 -3.17 -23.89 16 7 C 0.06 2.19 6.17 85.55 0.53 2.72 16 8 C 0.44 20.80 7.82 87.65 0.69 21.49 16 9 O -0.62 -34.30 15.78 -3.06 -0.05 -34.35 16 10 N -0.57 -29.46 5.29 -306.99 -1.62 -31.08 16 11 C -0.33 -19.01 9.68 84.04 0.81 -18.19 16 12 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 13 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 14 N -0.92 -49.70 13.05 21.66 0.28 -49.42 16 15 Si 0.99 42.71 29.55 68.60 2.03 44.74 16 16 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 17 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 19 N -0.71 -12.68 4.44 -451.36 -2.01 -14.69 16 20 C 0.57 12.61 7.50 85.12 0.64 13.25 16 21 O -0.60 -17.88 15.58 -4.49 -0.07 -17.95 16 22 C -0.33 -5.71 5.70 -20.16 -0.11 -5.82 16 23 C 0.16 2.84 10.47 66.74 0.70 3.54 16 24 O -0.32 -4.87 10.47 -76.28 -0.80 -5.67 16 25 C 0.04 0.38 7.16 72.14 0.52 0.90 16 26 C -0.15 -1.20 6.23 30.82 0.19 -1.01 16 27 C -0.08 -0.86 5.08 29.82 0.15 -0.70 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.08 1.63 7.75 -2.39 -0.02 1.61 16 35 H 0.34 11.03 8.43 -89.69 -0.76 10.28 16 36 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 37 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 39 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 40 H 0.41 5.67 6.71 -92.71 -0.62 5.05 16 41 H 0.17 3.15 7.21 -2.91 -0.02 3.13 16 42 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.08 0.87 8.14 -2.38 -0.02 0.86 16 47 H 0.09 0.84 7.15 -2.39 -0.02 0.82 16 Total: -1.00 -73.09 389.59 -0.51 -73.59 By element: Atomic # 1 Polarization: 42.96 SS G_CDS: -1.11 Total: 41.85 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: 6.01 Total: 16.87 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -6.52 Total: -119.08 kcal Atomic # 8 Polarization: -57.06 SS G_CDS: -0.92 Total: -57.98 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -73.09 -0.51 -73.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668000645.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.975 kcal (2) G-P(sol) polarization free energy of solvation -73.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds