Wall clock time and date at job start Fri Apr 10 2020 18:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34775 * 119.99798 * 2 1 4 4 O 1.21282 * 120.00180 * 354.69965 * 3 2 1 5 5 C 1.50703 * 120.00035 * 174.68962 * 3 2 1 6 6 C 1.50695 * 115.55208 * 304.89780 * 5 3 2 7 7 O 1.21285 * 119.99840 * 108.11421 * 6 5 3 8 8 N 1.34768 * 120.00306 * 288.12128 * 6 5 3 9 9 C 1.47154 * 120.98158 * 356.71792 * 8 6 5 10 10 C 1.53295 * 108.38892 * 230.55841 * 9 8 6 11 11 O 1.42963 * 109.26518 * 307.72491 * 10 9 8 12 12 C 1.42964 * 114.16907 * 62.49323 * 11 10 9 13 13 H 1.09002 * 109.50857 * 57.45566 * 12 11 10 14 14 C 1.52999 * 109.51075 * 177.55510 * 12 11 10 15 15 H 1.08992 * 109.47087 * 174.90059 * 14 12 11 16 16 C 1.52999 * 109.46974 * 54.89644 * 14 12 11 17 17 N 1.46503 * 109.47034 * 294.90369 * 14 12 11 18 18 C 1.36936 * 119.99620 * 205.00474 * 17 14 12 19 19 H 1.07998 * 120.00409 * 359.97438 * 18 17 14 20 20 C 1.38812 * 119.99907 * 179.97438 * 18 17 14 21 21 N 1.31624 * 119.99852 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00375 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47044 * 89.99712 * 22 20 18 24 24 H 1.48497 * 109.47305 * 210.00245 * 22 20 18 25 25 H 1.48502 * 109.46901 * 330.00085 * 22 20 18 26 26 C 1.47150 * 120.98751 * 176.74297 * 8 6 5 27 27 C 1.52998 * 117.51303 * 90.60036 * 5 3 2 28 28 C 1.52993 * 60.00217 * 107.48081 * 27 5 3 29 29 H 1.09001 * 109.46973 * 299.99402 * 1 2 3 30 30 H 1.08993 * 109.47347 * 59.99334 * 1 2 3 31 31 H 1.09000 * 109.46673 * 179.97438 * 1 2 3 32 32 H 0.96996 * 120.00479 * 180.02562 * 2 1 3 33 33 H 1.09001 * 109.68360 * 350.28174 * 9 8 6 34 34 H 1.09006 * 109.68402 * 110.79560 * 9 8 6 35 35 H 1.08998 * 109.51033 * 67.61928 * 10 9 8 36 36 H 1.08993 * 109.51491 * 187.72055 * 10 9 8 37 37 H 1.09006 * 109.47022 * 60.00589 * 16 14 12 38 38 H 1.09004 * 109.46979 * 180.02562 * 16 14 12 39 39 H 1.08992 * 109.47552 * 300.00130 * 16 14 12 40 40 H 0.97001 * 120.00177 * 24.71604 * 17 14 12 41 41 H 0.97000 * 119.99954 * 179.97438 * 21 20 18 42 42 H 1.09006 * 109.67880 * 9.71781 * 26 8 6 43 43 H 1.08996 * 109.68399 * 249.16788 * 26 8 6 44 44 H 1.09003 * 117.49513 * 214.96981 * 27 5 3 45 45 H 1.08999 * 117.50396 * 359.97438 * 27 5 3 46 46 H 1.09004 * 117.49867 * 252.50847 * 28 27 5 47 47 H 1.08999 * 117.50213 * 107.48501 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5363 2.2153 -0.0970 5 6 3.6411 1.1701 0.1208 6 6 4.1982 0.4459 1.3192 7 8 4.7697 -0.6141 1.1754 8 7 4.0612 0.9760 2.5506 9 6 3.4353 2.2939 2.7427 10 6 4.3611 3.1460 3.6183 11 8 4.6880 2.4194 4.8054 12 6 5.4059 1.2058 4.5698 13 1 6.3234 1.4257 4.0240 14 6 5.7521 0.5490 5.9076 15 1 6.2188 -0.4193 5.7270 16 6 4.4742 0.3545 6.7261 17 7 6.6799 1.4079 6.6477 18 6 7.5187 0.8634 7.5833 19 1 7.4959 -0.1990 7.7759 20 6 8.3982 1.6771 8.2842 21 7 8.4263 2.9719 8.0491 22 14 9.5419 0.9347 9.5609 23 1 10.8171 0.5375 8.9119 24 1 9.8172 1.9370 10.6214 25 1 8.9003 -0.2609 10.1645 26 6 4.5335 0.2545 3.7429 27 6 4.4543 1.1228 -1.1743 28 6 4.3861 2.4167 -0.3607 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9501 -0.8400 -0.0004 33 1 3.2957 2.7784 1.7763 34 1 2.4706 2.1739 3.2358 35 1 5.2744 3.3735 3.0686 36 1 3.8565 4.0742 3.8861 37 1 3.7838 -0.2846 6.1755 38 1 4.7209 -0.1130 7.6794 39 1 4.0075 1.3228 6.9067 40 1 6.7031 2.3616 6.4720 41 1 9.0406 3.5405 8.5392 42 1 5.1213 -0.6118 3.4389 43 1 3.6798 -0.0709 4.3373 44 1 5.3924 0.5679 -1.1594 45 1 3.9030 1.0892 -2.1139 46 1 3.7898 3.2346 -0.7650 47 1 5.2792 2.7130 0.1895 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675612505.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:26 Heat of formation + Delta-G solvation = -63.993302 kcal Electronic energy + Delta-G solvation = -29119.263217 eV Core-core repulsion = 25110.949187 eV Total energy + Delta-G solvation = -4008.314030 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.24293 -39.72201 -38.49379 -36.41340 -35.53716 -34.96909 -34.57930 -32.49339 -30.34410 -28.62531 -28.12926 -27.33970 -25.23051 -24.21275 -23.48669 -22.88306 -22.53503 -21.07930 -19.71999 -19.43676 -18.24851 -17.20155 -16.69768 -16.53191 -16.19910 -15.97824 -15.47624 -15.42205 -15.09009 -14.93439 -14.52186 -14.35495 -14.19660 -13.49668 -13.34662 -13.21954 -13.17877 -12.86886 -12.70171 -12.54359 -12.21181 -12.05773 -11.99674 -11.47939 -11.35848 -11.14457 -10.98414 -10.85219 -10.72538 -10.60925 -10.41861 -10.25987 -10.04710 -9.85039 -9.81452 -9.64865 -9.56943 -8.89405 -8.56644 -6.93191 -5.73074 -3.01964 1.98648 2.23897 2.56422 2.69356 3.36604 3.45291 3.50429 3.52140 3.97342 4.03379 4.20984 4.35432 4.39411 4.58015 4.75892 4.81952 4.95779 5.08561 5.09866 5.13452 5.17460 5.24849 5.30650 5.38095 5.42876 5.47494 5.60092 5.64970 5.68187 5.73571 5.78294 5.92839 5.95846 5.97366 6.16950 6.29991 6.45382 6.64167 6.81306 6.98204 7.10736 7.16773 7.46564 7.71972 7.72404 7.84880 8.45028 9.56918 10.14307 10.50970 11.49333 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.023647 B = 0.002832 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.811703 B = 9883.848435 C =10000.789361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.728 5.728 3 C 0.561 3.439 4 O -0.527 6.527 5 C -0.201 4.201 6 C 0.556 3.444 7 O -0.529 6.529 8 N -0.601 5.601 9 C 0.068 3.932 10 C 0.048 3.952 11 O -0.357 6.357 12 C 0.076 3.924 13 H 0.064 0.936 14 C 0.185 3.815 15 H 0.059 0.941 16 C -0.162 4.162 17 N -0.719 5.719 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.081 3.919 27 C -0.124 4.124 28 C -0.132 4.132 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.407 0.593 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.105 0.895 37 H 0.034 0.966 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.389 0.611 41 H 0.255 0.745 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.115 0.885 45 H 0.108 0.892 46 H 0.118 0.882 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.054 -3.811 -19.824 25.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.379 5.379 3 C 0.346 3.654 4 O -0.403 6.403 5 C -0.207 4.207 6 C 0.342 3.658 7 O -0.406 6.406 8 N -0.334 5.334 9 C -0.055 4.055 10 C -0.030 4.030 11 O -0.275 6.275 12 C 0.017 3.983 13 H 0.082 0.918 14 C 0.074 3.926 15 H 0.077 0.923 16 C -0.222 4.222 17 N -0.361 5.361 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.041 4.041 27 C -0.161 4.161 28 C -0.169 4.169 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.241 0.759 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.123 0.877 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.223 0.777 41 H 0.064 0.936 42 H 0.119 0.881 43 H 0.101 0.899 44 H 0.133 0.867 45 H 0.126 0.874 46 H 0.136 0.864 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.164 -3.666 -19.617 25.064 hybrid contribution 0.765 -0.509 0.507 1.050 sum -14.398 -4.175 -19.110 24.289 Atomic orbital electron populations 1.21598 0.78886 1.02623 1.02529 1.45738 1.08035 1.08784 1.75346 1.19014 0.86769 0.83871 0.75777 1.90725 1.69204 1.31373 1.48971 1.21456 0.92864 1.08070 0.98310 1.19064 0.79284 0.84826 0.82613 1.90723 1.42571 1.22296 1.84997 1.48117 1.59307 1.19934 1.06035 1.22623 0.97244 0.83350 1.02269 1.22891 0.97822 0.94858 0.87432 1.88112 1.75452 1.35354 1.28582 1.22970 0.92909 0.84513 0.97913 0.91809 1.20190 0.90922 0.93708 0.87735 0.92318 1.22415 0.98250 1.01028 1.00533 1.42351 1.41871 1.07165 1.44669 1.19242 1.12286 0.92732 1.12780 0.91177 1.24741 1.00215 0.95504 1.00458 1.69680 1.40449 1.03010 1.44734 0.86204 0.81001 0.77842 0.81223 1.21780 1.21814 1.20775 1.22574 1.00006 0.96422 0.85088 1.23093 1.00990 1.00016 0.92017 1.23176 1.01112 0.91198 1.01419 0.91971 0.91911 0.90343 0.75872 0.88373 0.90549 0.92796 0.87679 0.94750 0.92859 0.92404 0.77651 0.93562 0.88071 0.89927 0.86678 0.87366 0.86379 0.87132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.71 59.85 0.64 1.21 16 2 N -0.73 -6.15 5.66 -67.08 -0.38 -6.53 16 3 C 0.56 5.96 6.52 -10.98 -0.07 5.89 16 4 O -0.53 -6.85 16.25 5.56 0.09 -6.76 16 5 C -0.20 -2.04 1.16 -156.81 -0.18 -2.22 16 6 C 0.56 7.12 6.87 -10.99 -0.08 7.05 16 7 O -0.53 -8.15 16.33 5.55 0.09 -8.06 16 8 N -0.60 -7.77 3.02 -172.28 -0.52 -8.29 16 9 C 0.07 0.79 6.26 -3.53 -0.02 0.77 16 10 C 0.05 0.62 6.98 37.31 0.26 0.88 16 11 O -0.36 -6.08 9.24 -35.23 -0.33 -6.41 16 12 C 0.08 1.30 2.60 -26.58 -0.07 1.23 16 13 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 14 C 0.19 3.69 2.77 -67.93 -0.19 3.50 16 15 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 16 C -0.16 -2.98 9.06 37.16 0.34 -2.65 16 17 N -0.72 -18.23 5.11 -53.43 -0.27 -18.50 16 18 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 22 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.08 1.17 5.83 -3.53 -0.02 1.15 16 27 C -0.12 -1.01 9.78 -26.74 -0.26 -1.27 16 28 C -0.13 -1.12 8.45 -26.73 -0.23 -1.35 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.41 3.02 8.83 -40.82 -0.36 2.66 16 33 H 0.10 1.04 4.95 -51.93 -0.26 0.78 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.03 0.52 6.42 -51.93 -0.33 0.19 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 1.12 7.56 -51.93 -0.39 0.73 16 40 H 0.39 10.67 7.58 -40.82 -0.31 10.36 16 41 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.10 1.50 7.07 -51.93 -0.37 1.14 16 43 H 0.08 1.13 6.27 -51.93 -0.33 0.81 16 44 H 0.11 0.97 8.11 -51.93 -0.42 0.55 16 45 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.12 0.95 7.83 -51.93 -0.41 0.55 16 47 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 382.23 15.07 5.76 5.76 Total: -1.00 -34.13 382.23 -7.35 -41.48 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -7.37 Total: 10.56 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -0.12 Total: 6.91 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -0.45 Total: -60.96 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.14 Total: -21.23 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.13 -7.35 -41.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675612505.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.518 kcal (2) G-P(sol) polarization free energy of solvation -34.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds