Wall clock time and date at job start Fri Apr 10 2020 18:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99608 * 2 1 4 4 O 1.42901 * 109.46955 * 135.00147 * 3 2 1 5 5 C 1.42905 * 114.00134 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47264 * 179.97438 * 5 4 3 7 7 O 1.21279 * 119.99926 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99773 * 179.97438 * 6 5 4 9 9 C 1.47426 * 125.64840 * 0.02967 * 8 6 5 10 10 C 1.54911 * 104.82828 * 155.83211 * 9 8 6 11 11 C 1.55153 * 101.58390 * 37.00849 * 10 9 8 12 12 H 1.09005 * 110.72132 * 82.85731 * 11 10 9 13 13 N 1.46900 * 110.71891 * 205.95493 * 11 10 9 14 14 C 1.46898 * 111.00036 * 273.54372 * 13 11 10 15 15 C 1.50701 * 109.47404 * 180.02562 * 14 13 11 16 16 O 1.21292 * 119.99635 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00566 * 180.02562 * 15 14 13 18 18 C 1.37095 * 120.00389 * 180.02562 * 17 15 14 19 19 H 1.08004 * 119.99635 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99953 * 179.97438 * 18 17 15 21 21 N 1.31403 * 120.00275 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99852 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47443 * 89.99864 * 22 20 18 24 24 H 1.48496 * 109.47129 * 209.99833 * 22 20 18 25 25 H 1.48500 * 109.46941 * 329.99854 * 22 20 18 26 26 C 1.47022 * 125.64428 * 179.71702 * 8 6 5 27 27 H 1.09004 * 109.88367 * 300.51235 * 26 8 6 28 28 C 1.52995 * 109.88383 * 61.68235 * 26 8 6 29 29 H 1.08002 * 120.00573 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00098 * 180.02562 * 1 2 3 31 31 H 1.07993 * 120.00347 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.47512 * 15.00116 * 3 2 1 33 33 H 1.09002 * 109.46988 * 254.99563 * 3 2 1 34 34 H 1.09001 * 109.47103 * 300.00246 * 5 4 3 35 35 H 1.09004 * 109.47054 * 59.99750 * 5 4 3 36 36 H 1.09003 * 110.36453 * 274.66748 * 9 8 6 37 37 H 1.08996 * 110.36829 * 36.99172 * 9 8 6 38 38 H 1.09005 * 110.99816 * 155.08354 * 10 9 8 39 39 H 1.09002 * 111.00436 * 278.92877 * 10 9 8 40 40 H 1.00900 * 111.00106 * 37.49655 * 13 11 10 41 41 H 1.09002 * 109.47161 * 299.99918 * 14 13 11 42 42 H 1.09003 * 109.46905 * 60.00062 * 14 13 11 43 43 H 0.97001 * 119.99776 * 359.97438 * 17 15 14 44 44 H 0.97003 * 120.00494 * 179.97438 * 21 20 18 45 45 H 1.08994 * 109.47174 * 58.54158 * 28 26 8 46 46 H 1.08995 * 109.47218 * 178.54538 * 28 26 8 47 47 H 1.09002 * 109.46825 * 298.54127 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1266 1.2414 0.9527 5 6 3.9083 2.4350 1.0321 6 6 4.9939 2.2570 2.0621 7 8 5.0890 1.2108 2.6682 8 7 5.8595 3.2601 2.3091 9 6 5.8587 4.5779 1.6481 10 6 6.5636 5.5249 2.6512 11 6 7.6594 4.5967 3.2386 12 1 8.5302 4.5656 2.5838 13 7 8.0415 5.0332 4.5882 14 6 9.0918 6.0588 4.5321 15 6 9.4574 6.4806 5.9319 16 8 8.8977 5.9767 6.8827 17 7 10.4055 7.4183 6.1273 18 6 10.7385 7.8016 7.4008 19 1 10.2407 7.3524 8.2474 20 6 11.7163 8.7680 7.6021 21 7 12.3223 9.3142 6.5720 22 14 12.1695 9.2908 9.3373 23 1 13.2684 8.4294 9.8428 24 1 12.6156 10.7071 9.3270 25 1 10.9846 9.1515 10.2216 26 6 6.9569 3.2235 3.2868 27 1 6.5581 3.0439 4.2852 28 6 7.9497 2.1208 2.9137 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3854 2.1161 0.2660 33 1 2.4754 1.4868 -0.9927 34 1 4.3586 2.6397 0.0608 35 1 3.2688 3.2697 1.3192 36 1 6.4163 4.5333 0.7125 37 1 4.8368 4.9105 1.4663 38 1 7.0079 6.3774 2.1374 39 1 5.8737 5.8550 3.4278 40 1 7.2390 5.3653 5.1017 41 1 9.9717 5.6510 4.0344 42 1 8.7271 6.9222 3.9756 43 1 10.8528 7.8215 5.3669 44 1 13.0047 9.9892 6.7125 45 1 8.3381 2.3052 1.9122 46 1 8.7732 2.1166 3.6277 47 1 7.4450 1.1550 2.9356 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676633710.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:32 Heat of formation + Delta-G solvation = -84.941547 kcal Electronic energy + Delta-G solvation = -26957.836623 eV Core-core repulsion = 22948.614209 eV Total energy + Delta-G solvation = -4009.222414 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.54356 -38.83485 -38.18286 -37.44032 -34.79229 -34.26376 -33.82027 -31.72387 -31.27520 -30.83698 -28.44867 -26.95766 -25.92558 -24.97328 -23.55752 -22.98137 -21.09872 -20.49018 -19.44023 -19.01807 -17.92626 -17.66723 -17.03208 -16.84863 -16.29444 -15.90456 -15.81102 -15.28071 -14.74183 -14.61597 -14.56142 -14.07391 -13.91745 -13.76979 -13.60568 -13.32132 -13.21700 -12.77465 -12.69472 -12.49968 -12.43631 -12.19990 -11.99900 -11.69079 -11.59567 -11.49163 -11.41709 -11.14106 -11.02400 -10.86498 -10.41571 -10.40662 -10.23684 -9.90695 -9.75709 -9.52967 -8.86328 -8.50881 -8.11775 -7.98345 -6.43863 -3.84663 1.67368 2.41113 2.44256 3.16912 3.25809 3.31561 3.53124 3.87643 3.98431 4.14867 4.20788 4.33824 4.52983 4.60701 4.63650 4.70016 4.74828 4.82764 4.89803 4.97871 5.04268 5.05999 5.14144 5.19938 5.24675 5.39979 5.41403 5.48555 5.58759 5.69905 5.75961 5.80869 5.92943 6.04995 6.12281 6.15658 6.22392 6.23660 6.30010 6.64484 7.12450 7.28270 7.53452 7.54764 7.98795 8.04058 8.58757 9.15911 9.51698 10.03043 10.73769 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.038272 B = 0.001757 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.431086 B =15930.127328 C =15993.557725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.150 4.150 3 C 0.087 3.913 4 O -0.360 6.360 5 C 0.049 3.951 6 C 0.529 3.471 7 O -0.514 6.514 8 N -0.616 5.616 9 C 0.100 3.900 10 C -0.170 4.170 11 C 0.084 3.916 12 H 0.097 0.903 13 N -0.657 5.657 14 C 0.053 3.947 15 C 0.439 3.561 16 O -0.582 6.582 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.145 3.855 27 H 0.087 0.913 28 C -0.157 4.157 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.353 0.647 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.051 0.949 46 H 0.074 0.926 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.119 -9.034 -19.487 27.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.168 4.168 3 C 0.011 3.989 4 O -0.278 6.278 5 C -0.031 4.031 6 C 0.317 3.683 7 O -0.388 6.388 8 N -0.353 5.353 9 C -0.023 4.023 10 C -0.210 4.210 11 C -0.028 4.028 12 H 0.115 0.885 13 N -0.288 5.288 14 C -0.080 4.080 15 C 0.225 3.775 16 O -0.466 6.466 17 N -0.199 5.199 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C 0.042 3.958 27 H 0.106 0.894 28 C -0.215 4.215 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.136 0.864 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.174 0.826 41 H 0.105 0.895 42 H 0.063 0.937 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.093 0.907 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.869 -10.547 -18.291 27.026 hybrid contribution 0.036 1.759 -0.266 1.780 sum -16.833 -8.788 -18.557 26.551 Atomic orbital electron populations 1.23850 0.95492 1.02380 0.99876 1.22708 0.95622 0.98162 1.00344 1.21622 0.88718 0.96315 0.92292 1.88049 1.44304 1.34918 1.60506 1.22175 0.93128 0.89190 0.98570 1.19776 0.81729 0.83050 0.83791 1.90743 1.71909 1.26334 1.49805 1.48520 1.31381 1.14319 1.41111 1.22315 1.01223 0.82540 0.96268 1.23621 0.99213 0.98487 0.99654 1.22694 0.96465 0.92554 0.91052 0.88514 1.59944 1.14483 1.41822 1.12564 1.21682 0.95801 0.93422 0.97075 1.19786 0.84229 0.83642 0.89869 1.90538 1.55703 1.57561 1.42842 1.41851 1.33995 1.35006 1.09095 1.19712 1.18864 1.19514 0.84871 0.87900 1.25251 0.96469 0.96697 0.99434 1.69604 1.26258 1.28244 1.30191 0.85859 0.78980 0.77597 0.81867 1.20364 1.20944 1.19424 1.21518 0.86278 0.95317 0.92688 0.89449 1.22066 0.99120 0.98956 1.01343 0.88395 0.87647 0.86361 0.92527 0.92073 0.90288 0.90318 0.90927 0.90678 0.89452 0.90064 0.82601 0.89459 0.93666 0.77472 0.91870 0.93001 0.90745 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.04 14.31 29.02 0.42 -0.63 16 2 C -0.15 -1.10 9.89 -36.02 -0.36 -1.46 16 3 C 0.09 0.63 6.35 36.01 0.23 0.85 16 4 O -0.36 -3.94 9.86 -55.14 -0.54 -4.49 16 5 C 0.05 0.42 5.42 36.01 0.20 0.62 16 6 C 0.53 6.52 7.72 -10.98 -0.08 6.44 16 7 O -0.51 -8.69 15.53 -14.35 -0.22 -8.91 16 8 N -0.62 -6.51 3.07 -163.02 -0.50 -7.01 16 9 C 0.10 0.71 6.69 -2.53 -0.02 0.69 16 10 C -0.17 -1.43 6.63 -24.58 -0.16 -1.59 16 11 C 0.08 0.94 2.75 -65.88 -0.18 0.75 16 12 H 0.10 1.01 7.61 -51.93 -0.40 0.61 16 13 N -0.66 -9.84 5.91 -106.06 -0.63 -10.47 16 14 C 0.05 0.86 6.02 -4.98 -0.03 0.83 16 15 C 0.44 10.05 7.82 -10.99 -0.09 9.97 16 16 O -0.58 -15.57 15.78 5.55 0.09 -15.48 16 17 N -0.56 -13.93 5.29 -10.96 -0.06 -13.98 16 18 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 19 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -24.15 13.05 55.50 0.72 -23.42 16 22 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 C 0.14 1.77 3.21 -66.96 -0.22 1.56 16 27 H 0.09 1.28 8.03 -51.93 -0.42 0.86 16 28 C -0.16 -1.93 9.10 37.16 0.34 -1.60 16 29 H 0.10 0.46 7.90 -52.49 -0.41 0.05 16 30 H 0.11 0.50 8.06 -52.49 -0.42 0.07 16 31 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.06 0.32 7.86 -51.93 -0.41 -0.08 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.49 7.85 -51.93 -0.41 0.09 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.38 7.48 -51.93 -0.39 -0.01 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.74 7.82 -51.93 -0.41 0.33 16 40 H 0.35 5.55 8.00 -39.29 -0.31 5.24 16 41 H 0.09 1.31 8.09 -51.93 -0.42 0.89 16 42 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 43 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 44 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.07 0.94 6.87 -51.93 -0.36 0.59 16 LS Contribution 394.44 15.07 5.94 5.94 Total: -1.00 -34.52 394.44 -7.98 -42.51 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -7.57 Total: 10.94 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -0.20 Total: 8.54 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.46 Total: -54.89 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.68 Total: -28.88 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.52 -7.98 -42.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676633710.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.436 kcal (2) G-P(sol) polarization free energy of solvation -34.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds