Wall clock time and date at job start Fri Apr 10 2020 18:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 119.99893 * 2 1 4 4 O 1.42899 * 109.47226 * 134.99895 * 3 2 1 5 5 C 1.42894 * 114.00246 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47425 * 180.02562 * 5 4 3 7 7 O 1.21288 * 119.99824 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00163 * 179.97438 * 6 5 4 9 9 C 1.47419 * 125.64801 * 0.02595 * 8 6 5 10 10 C 1.54916 * 104.83274 * 155.83380 * 9 8 6 11 11 C 1.55160 * 101.57778 * 37.01055 * 10 9 8 12 12 H 1.08995 * 110.72133 * 83.04126 * 11 10 9 13 13 N 1.46903 * 110.71771 * 206.13377 * 11 10 9 14 14 C 1.46896 * 110.99955 * 273.54789 * 13 11 10 15 15 C 1.50700 * 109.46942 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00282 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00075 * 179.97438 * 15 14 13 18 18 C 1.37104 * 120.00173 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99666 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00001 * 180.27893 * 18 17 15 21 21 N 1.31407 * 120.00135 * 179.72366 * 20 18 17 22 22 Si 1.86800 * 120.00194 * 359.72088 * 20 18 17 23 23 H 1.48500 * 109.47210 * 89.99937 * 22 20 18 24 24 H 1.48496 * 109.47530 * 210.00374 * 22 20 18 25 25 H 1.48501 * 109.47312 * 330.00618 * 22 20 18 26 26 C 1.47030 * 125.64577 * 179.97438 * 8 6 5 27 27 H 1.09002 * 109.88157 * 61.68247 * 26 8 6 28 28 C 1.52994 * 109.88362 * 300.51244 * 26 8 6 29 29 H 1.07999 * 120.00370 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.00078 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99761 * 179.97438 * 2 1 3 32 32 H 1.08992 * 109.46990 * 14.99804 * 3 2 1 33 33 H 1.08999 * 109.46775 * 254.99592 * 3 2 1 34 34 H 1.08999 * 109.46997 * 59.99664 * 5 4 3 35 35 H 1.09005 * 109.47025 * 299.99702 * 5 4 3 36 36 H 1.09001 * 110.36724 * 36.99847 * 9 8 6 37 37 H 1.08997 * 110.45772 * 274.71892 * 9 8 6 38 38 H 1.08996 * 111.00227 * 278.93598 * 10 9 8 39 39 H 1.09000 * 111.00275 * 155.07950 * 10 9 8 40 40 H 1.00907 * 111.00029 * 37.50302 * 13 11 10 41 41 H 1.08994 * 109.47346 * 60.00149 * 14 13 11 42 42 H 1.08998 * 109.47279 * 299.99821 * 14 13 11 43 43 H 0.97000 * 120.00140 * 0.02562 * 17 15 14 44 44 H 0.97004 * 120.00486 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.47657 * 302.19530 * 28 26 8 46 46 H 1.09000 * 109.47053 * 62.19655 * 28 26 8 47 47 H 1.08999 * 109.47200 * 182.19308 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9084 2.4349 1.0321 6 6 4.9947 2.2565 2.0612 7 8 5.0898 1.2103 2.6675 8 7 5.8605 3.2594 2.3080 9 6 5.8593 4.5775 1.6477 10 6 6.5649 5.5241 2.6506 11 6 7.6611 4.5956 3.2368 12 1 8.5327 4.5673 2.5830 13 7 8.0413 5.0290 4.5880 14 6 9.0903 6.0560 4.5357 15 6 9.4529 6.4753 5.9371 16 8 8.8923 5.9689 6.8860 17 7 10.4003 7.4131 6.1360 18 6 10.7306 7.7943 7.4109 19 1 10.2313 7.3433 8.2558 20 6 11.7031 8.7653 7.6158 21 7 12.0158 9.1345 8.8375 22 14 12.5662 9.5458 6.1545 23 1 11.8115 10.7479 5.7181 24 1 13.9431 9.9408 6.5458 25 1 12.6299 8.5691 5.0376 26 6 6.9619 3.2205 3.2812 27 1 7.6688 2.4364 3.0099 28 6 6.4080 2.9633 4.6840 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3855 2.1160 0.2659 33 1 2.4756 1.4867 -0.9926 34 1 3.2689 3.2696 1.3191 35 1 4.3588 2.6395 0.0607 36 1 4.8372 4.9102 1.4668 37 1 6.4151 4.5348 0.7110 38 1 5.8755 5.8538 3.4278 39 1 7.0089 6.3768 2.1369 40 1 7.2377 5.3588 5.1015 41 1 8.7253 6.9204 3.9812 42 1 9.9712 5.6505 4.0380 43 1 10.8484 7.8184 5.3772 44 1 12.6951 9.8121 8.9806 45 1 5.6881 3.7411 4.9387 46 1 5.9160 1.9910 4.7077 47 1 7.2254 2.9745 5.4050 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676633711.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:36 Heat of formation + Delta-G solvation = -73.629158 kcal Electronic energy + Delta-G solvation = -27136.082892 eV Core-core repulsion = 23127.351020 eV Total energy + Delta-G solvation = -4008.731872 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.61610 -38.93721 -38.31959 -37.51213 -34.87782 -34.27751 -33.88675 -31.74040 -31.46995 -30.93858 -28.51475 -26.83195 -25.94794 -25.21663 -23.66144 -23.17693 -20.81422 -20.37648 -19.46045 -19.10750 -18.46430 -17.72476 -17.03881 -16.84877 -16.13638 -16.02991 -15.83978 -15.45628 -14.98729 -14.82985 -14.76974 -14.09639 -13.88614 -13.60496 -13.45782 -13.28292 -13.01891 -12.87665 -12.72097 -12.63427 -12.45372 -12.38302 -12.26687 -12.02346 -11.65367 -11.52910 -11.43686 -11.19443 -10.96890 -10.86188 -10.62211 -10.43691 -9.99987 -9.89826 -9.76954 -9.59962 -8.88889 -8.63769 -8.23578 -8.18062 -6.33190 -3.84896 1.65875 2.38557 2.42196 3.00030 3.03670 3.12848 3.50962 3.70553 3.92505 4.07744 4.12572 4.24795 4.48527 4.57378 4.61245 4.66252 4.69712 4.76849 4.85784 4.87339 4.96490 5.02016 5.03274 5.15113 5.20054 5.40084 5.42153 5.47048 5.55803 5.60734 5.71542 5.74057 5.81801 5.90147 6.09349 6.11009 6.15809 6.34022 6.54908 6.63590 6.99993 7.25670 7.45985 7.55533 7.96711 8.12152 8.57007 8.92725 9.39854 9.79628 10.79891 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.039869 B = 0.001857 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.126793 B =15070.783942 C =15419.840867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C 0.087 3.913 4 O -0.359 6.359 5 C 0.049 3.951 6 C 0.530 3.470 7 O -0.513 6.513 8 N -0.617 5.617 9 C 0.100 3.900 10 C -0.168 4.168 11 C 0.083 3.917 12 H 0.096 0.904 13 N -0.653 5.653 14 C 0.048 3.952 15 C 0.449 3.551 16 O -0.564 6.564 17 N -0.590 5.590 18 C -0.306 4.306 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.272 1.272 24 H -0.276 1.276 25 H -0.269 1.269 26 C 0.147 3.853 27 H 0.080 0.920 28 C -0.155 4.155 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.356 0.644 41 H 0.046 0.954 42 H 0.088 0.912 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.055 -8.630 -24.292 30.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.169 4.169 3 C 0.011 3.989 4 O -0.278 6.278 5 C -0.031 4.031 6 C 0.317 3.683 7 O -0.387 6.387 8 N -0.354 5.354 9 C -0.024 4.024 10 C -0.208 4.208 11 C -0.029 4.029 12 H 0.114 0.886 13 N -0.285 5.285 14 C -0.085 4.085 15 C 0.234 3.766 16 O -0.445 6.445 17 N -0.229 5.229 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.520 5.520 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.195 1.195 26 C 0.044 3.956 27 H 0.098 0.902 28 C -0.213 4.213 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.136 0.864 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.178 0.822 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.828 -10.165 -22.936 30.208 hybrid contribution 0.275 1.949 -1.668 2.580 sum -16.553 -8.216 -24.603 30.770 Atomic orbital electron populations 1.23854 0.95490 1.02389 0.99839 1.22711 0.95624 0.98156 1.00376 1.21621 0.88712 0.96328 0.92274 1.88048 1.44305 1.34902 1.60507 1.22173 0.93121 0.89206 0.98569 1.19771 0.81803 0.83013 0.83730 1.90747 1.71738 1.26434 1.49761 1.48552 1.31663 1.14251 1.40938 1.22298 1.01252 0.82635 0.96199 1.23603 0.99158 0.98409 0.99633 1.22629 0.96404 0.92997 0.90880 0.88637 1.60053 1.14548 1.41399 1.12549 1.21738 0.96225 0.93731 0.96791 1.19684 0.83736 0.83137 0.90000 1.90579 1.54627 1.56349 1.42976 1.42200 1.35628 1.36843 1.08264 1.19436 1.20112 1.20097 0.83804 0.86266 1.25037 0.97256 0.97139 0.96688 1.69619 1.31964 1.30974 1.19489 0.86670 0.80329 0.80040 0.82321 1.19704 1.20166 1.19478 1.21509 0.87336 0.97223 0.89542 0.90236 1.21973 1.02155 1.01640 0.95547 0.87634 0.88396 0.86355 0.92530 0.92084 0.90331 0.90331 0.90715 0.90919 0.90058 0.89545 0.82249 0.93602 0.89336 0.79717 0.91595 0.93226 0.91975 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.02 14.31 29.01 0.42 -0.60 16 2 C -0.15 -1.08 9.89 -36.03 -0.36 -1.44 16 3 C 0.09 0.61 6.35 36.01 0.23 0.84 16 4 O -0.36 -3.87 9.86 -55.14 -0.54 -4.41 16 5 C 0.05 0.41 5.42 36.00 0.20 0.61 16 6 C 0.53 6.35 7.71 -10.99 -0.08 6.27 16 7 O -0.51 -8.53 15.41 -14.36 -0.22 -8.75 16 8 N -0.62 -6.22 3.08 -163.01 -0.50 -6.73 16 9 C 0.10 0.65 6.69 -2.53 -0.02 0.63 16 10 C -0.17 -1.29 6.63 -24.58 -0.16 -1.45 16 11 C 0.08 0.85 3.11 -65.87 -0.20 0.64 16 12 H 0.10 0.88 7.89 -51.93 -0.41 0.47 16 13 N -0.65 -9.06 4.49 -106.06 -0.48 -9.54 16 14 C 0.05 0.71 6.02 -4.98 -0.03 0.68 16 15 C 0.45 9.74 7.82 -10.98 -0.09 9.65 16 16 O -0.56 -14.70 15.78 5.55 0.09 -14.61 16 17 N -0.59 -13.60 5.09 -10.96 -0.06 -13.65 16 18 C -0.31 -8.51 10.16 -14.93 -0.15 -8.67 16 19 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -25.47 13.96 55.50 0.77 -24.70 16 22 Si 0.88 18.94 27.73 -169.99 -4.71 14.22 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 26 C 0.15 1.70 3.48 -66.95 -0.23 1.47 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 C -0.16 -2.10 8.19 37.15 0.30 -1.79 16 29 H 0.11 0.49 8.06 -52.49 -0.42 0.06 16 30 H 0.10 0.45 7.90 -52.49 -0.41 0.03 16 31 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.06 0.32 7.86 -51.93 -0.41 -0.09 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.48 7.85 -51.93 -0.41 0.07 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.35 7.48 -51.93 -0.39 -0.04 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.69 7.81 -51.93 -0.41 0.28 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.36 5.25 7.25 -39.29 -0.28 4.97 16 41 H 0.05 0.57 8.13 -51.93 -0.42 0.15 16 42 H 0.09 1.18 8.08 -51.93 -0.42 0.76 16 43 H 0.37 7.42 5.77 -40.82 -0.24 7.18 16 44 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.05 0.65 7.88 -51.93 -0.41 0.24 16 46 H 0.06 0.94 6.76 -51.93 -0.35 0.59 16 47 H 0.09 1.34 7.40 -51.93 -0.38 0.95 16 LS Contribution 388.01 15.07 5.85 5.85 Total: -1.00 -35.66 388.01 -7.54 -43.20 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -7.46 Total: 11.25 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -0.28 Total: 7.87 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.26 Total: -54.62 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.68 Total: -27.77 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.71 Total: 14.22 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.66 -7.54 -43.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676633711.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.433 kcal (2) G-P(sol) polarization free energy of solvation -35.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds