Wall clock time and date at job start Fri Apr 10 2020 18:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 119.99893 * 2 1 4 4 O 1.42899 * 109.47226 * 134.99895 * 3 2 1 5 5 C 1.42894 * 114.00246 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47425 * 180.02562 * 5 4 3 7 7 O 1.21288 * 119.99824 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00163 * 179.97438 * 6 5 4 9 9 C 1.47419 * 125.64801 * 0.02595 * 8 6 5 10 10 C 1.54916 * 104.83274 * 155.83380 * 9 8 6 11 11 C 1.55160 * 101.57778 * 37.01055 * 10 9 8 12 12 H 1.08995 * 110.72133 * 83.04126 * 11 10 9 13 13 N 1.46903 * 110.71771 * 206.13377 * 11 10 9 14 14 C 1.46896 * 110.99955 * 273.54789 * 13 11 10 15 15 C 1.50700 * 109.46942 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00282 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00075 * 179.97438 * 15 14 13 18 18 C 1.37104 * 120.00173 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99666 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00001 * 180.27893 * 18 17 15 21 21 N 1.31407 * 120.00135 * 179.72366 * 20 18 17 22 22 Si 1.86800 * 120.00194 * 359.72088 * 20 18 17 23 23 H 1.48500 * 109.47210 * 89.99937 * 22 20 18 24 24 H 1.48496 * 109.47530 * 210.00374 * 22 20 18 25 25 H 1.48501 * 109.47312 * 330.00618 * 22 20 18 26 26 C 1.47030 * 125.64577 * 179.97438 * 8 6 5 27 27 H 1.09002 * 109.88157 * 61.68247 * 26 8 6 28 28 C 1.52994 * 109.88362 * 300.51244 * 26 8 6 29 29 H 1.07999 * 120.00370 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.00078 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99761 * 179.97438 * 2 1 3 32 32 H 1.08992 * 109.46990 * 14.99804 * 3 2 1 33 33 H 1.08999 * 109.46775 * 254.99592 * 3 2 1 34 34 H 1.08999 * 109.46997 * 59.99664 * 5 4 3 35 35 H 1.09005 * 109.47025 * 299.99702 * 5 4 3 36 36 H 1.09001 * 110.36724 * 36.99847 * 9 8 6 37 37 H 1.08997 * 110.45772 * 274.71892 * 9 8 6 38 38 H 1.08996 * 111.00227 * 278.93598 * 10 9 8 39 39 H 1.09000 * 111.00275 * 155.07950 * 10 9 8 40 40 H 1.00907 * 111.00029 * 37.50302 * 13 11 10 41 41 H 1.08994 * 109.47346 * 60.00149 * 14 13 11 42 42 H 1.08998 * 109.47279 * 299.99821 * 14 13 11 43 43 H 0.97000 * 120.00140 * 0.02562 * 17 15 14 44 44 H 0.97004 * 120.00486 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.47657 * 302.19530 * 28 26 8 46 46 H 1.09000 * 109.47053 * 62.19655 * 28 26 8 47 47 H 1.08999 * 109.47200 * 182.19308 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9084 2.4349 1.0321 6 6 4.9947 2.2565 2.0612 7 8 5.0898 1.2103 2.6675 8 7 5.8605 3.2594 2.3080 9 6 5.8593 4.5775 1.6477 10 6 6.5649 5.5241 2.6506 11 6 7.6611 4.5956 3.2368 12 1 8.5327 4.5673 2.5830 13 7 8.0413 5.0290 4.5880 14 6 9.0903 6.0560 4.5357 15 6 9.4529 6.4753 5.9371 16 8 8.8923 5.9689 6.8860 17 7 10.4003 7.4131 6.1360 18 6 10.7306 7.7943 7.4109 19 1 10.2313 7.3433 8.2558 20 6 11.7031 8.7653 7.6158 21 7 12.0158 9.1345 8.8375 22 14 12.5662 9.5458 6.1545 23 1 11.8115 10.7479 5.7181 24 1 13.9431 9.9408 6.5458 25 1 12.6299 8.5691 5.0376 26 6 6.9619 3.2205 3.2812 27 1 7.6688 2.4364 3.0099 28 6 6.4080 2.9633 4.6840 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3855 2.1160 0.2659 33 1 2.4756 1.4867 -0.9926 34 1 3.2689 3.2696 1.3191 35 1 4.3588 2.6395 0.0607 36 1 4.8372 4.9102 1.4668 37 1 6.4151 4.5348 0.7110 38 1 5.8755 5.8538 3.4278 39 1 7.0089 6.3768 2.1369 40 1 7.2377 5.3588 5.1015 41 1 8.7253 6.9204 3.9812 42 1 9.9712 5.6505 4.0380 43 1 10.8484 7.8184 5.3772 44 1 12.6951 9.8121 8.9806 45 1 5.6881 3.7411 4.9387 46 1 5.9160 1.9910 4.7077 47 1 7.2254 2.9745 5.4050 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676633711.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:35 Heat of formation + Delta-G solvation = -101.351631 kcal Electronic energy + Delta-G solvation = -27137.285028 eV Core-core repulsion = 23127.351020 eV Total energy + Delta-G solvation = -4009.934009 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.44908 -40.28323 -39.40596 -38.38896 -36.20094 -35.57710 -34.77858 -33.72894 -32.45425 -31.77707 -29.28655 -28.14587 -26.57454 -26.36639 -25.12314 -23.87278 -21.52532 -21.28425 -20.94187 -20.30625 -19.93395 -18.48758 -17.88951 -17.61783 -17.38647 -16.90904 -16.79809 -16.64173 -16.39599 -15.81962 -15.62273 -15.34955 -14.98813 -14.77832 -14.48070 -14.37037 -14.16365 -14.04668 -13.82855 -13.64123 -13.44288 -13.23370 -13.08933 -13.02916 -12.98289 -12.69849 -12.48437 -12.38784 -11.97265 -11.90304 -11.81751 -11.66987 -11.48268 -11.00511 -10.79650 -10.40499 -10.26684 -10.22516 -9.71236 -9.25128 -8.39074 -6.00294 1.17041 1.32382 1.38052 1.47306 1.54480 1.70788 2.00004 2.25616 2.74143 2.96479 3.17872 3.32508 3.46812 3.64645 3.83046 4.04635 4.07336 4.13408 4.15951 4.19239 4.24101 4.26023 4.36917 4.43837 4.44808 4.52665 4.59871 4.61857 4.66848 4.75128 4.77462 4.97499 5.00875 5.10305 5.13850 5.37225 5.38566 5.55060 5.65230 5.69464 5.93383 6.08286 6.09285 6.36402 6.49653 6.62397 6.91132 7.13099 7.43003 8.00701 8.78752 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.039869 B = 0.001857 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.126793 B =15070.783942 C =15419.840867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.178 4.178 3 C 0.085 3.915 4 O -0.400 6.400 5 C 0.054 3.946 6 C 0.519 3.481 7 O -0.576 6.576 8 N -0.612 5.612 9 C 0.098 3.902 10 C -0.161 4.161 11 C 0.089 3.911 12 H 0.118 0.882 13 N -0.676 5.676 14 C 0.065 3.935 15 C 0.447 3.553 16 O -0.617 6.617 17 N -0.590 5.590 18 C -0.330 4.330 19 H 0.052 0.948 20 C -0.017 4.017 21 N -0.937 5.937 22 Si 0.967 3.033 23 H -0.255 1.255 24 H -0.279 1.279 25 H -0.228 1.228 26 C 0.145 3.855 27 H 0.065 0.935 28 C -0.144 4.144 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.114 0.886 40 H 0.347 0.653 41 H 0.088 0.912 42 H 0.117 0.883 43 H 0.391 0.609 44 H 0.278 0.722 45 H 0.049 0.951 46 H 0.037 0.963 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.260 -6.453 -29.642 34.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.197 4.197 3 C 0.010 3.990 4 O -0.319 6.319 5 C -0.025 4.025 6 C 0.308 3.692 7 O -0.455 6.455 8 N -0.348 5.348 9 C -0.024 4.024 10 C -0.200 4.200 11 C -0.022 4.022 12 H 0.136 0.864 13 N -0.308 5.308 14 C -0.067 4.067 15 C 0.235 3.765 16 O -0.501 6.501 17 N -0.232 5.232 18 C -0.459 4.459 19 H 0.070 0.930 20 C -0.215 4.215 21 N -0.578 5.578 22 Si 0.787 3.213 23 H -0.180 1.180 24 H -0.204 1.204 25 H -0.151 1.151 26 C 0.041 3.959 27 H 0.084 0.916 28 C -0.202 4.202 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.123 0.877 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.089 0.911 39 H 0.133 0.867 40 H 0.168 0.832 41 H 0.105 0.895 42 H 0.135 0.865 43 H 0.226 0.774 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.056 0.944 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.047 -7.965 -28.348 34.024 hybrid contribution 0.219 1.164 0.122 1.191 sum -16.828 -6.801 -28.226 33.558 Atomic orbital electron populations 1.24061 0.95050 1.03501 0.97813 1.22805 0.96339 0.98180 1.02337 1.21793 0.88240 0.96520 0.92496 1.88004 1.45555 1.36479 1.61883 1.22296 0.92307 0.89185 0.98727 1.20633 0.82408 0.82360 0.83808 1.90718 1.73467 1.29030 1.52236 1.48595 1.30466 1.15450 1.40285 1.22630 1.03400 0.79944 0.96429 1.23579 0.97975 0.98818 0.99644 1.22635 0.98011 0.92280 0.89290 0.86409 1.59964 1.14349 1.41433 1.15084 1.21651 0.97732 0.95635 0.91683 1.21105 0.81692 0.81142 0.92579 1.90563 1.56010 1.57687 1.45873 1.42010 1.36583 1.37714 1.06932 1.19002 1.21100 1.21281 0.84508 0.92974 1.26153 0.97473 0.97026 1.00850 1.69815 1.32979 1.31969 1.22998 0.85336 0.78050 0.79761 0.78166 1.17972 1.20391 1.15101 1.21404 0.87822 0.98190 0.88513 0.91641 1.21799 1.01119 1.00232 0.97042 0.86890 0.86917 0.87741 0.90830 0.90229 0.87540 0.86936 0.88025 0.88062 0.91109 0.86722 0.83233 0.89462 0.86547 0.77354 0.91224 0.93213 0.94425 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 14.31 67.78 0.97 -0.70 16 2 C -0.18 -2.46 9.89 25.64 0.25 -2.20 16 3 C 0.08 1.04 6.35 71.24 0.45 1.49 16 4 O -0.40 -8.21 9.86 -129.94 -1.28 -9.49 16 5 C 0.05 0.75 5.42 71.24 0.39 1.14 16 6 C 0.52 11.99 7.71 87.66 0.68 12.67 16 7 O -0.58 -20.03 15.41 15.98 0.25 -19.79 16 8 N -0.61 -11.09 3.08 -788.04 -2.43 -13.52 16 9 C 0.10 0.80 6.69 86.86 0.58 1.38 16 10 C -0.16 -1.72 6.63 31.99 0.21 -1.50 16 11 C 0.09 1.53 3.11 46.10 0.14 1.67 16 12 H 0.12 1.58 7.89 -2.39 -0.02 1.56 16 13 N -0.68 -17.61 4.49 -489.46 -2.20 -19.81 16 14 C 0.06 1.71 6.02 85.56 0.52 2.22 16 15 C 0.45 19.18 7.82 87.66 0.69 19.86 16 16 O -0.62 -33.54 15.78 -3.07 -0.05 -33.59 16 17 N -0.59 -26.74 5.09 -306.98 -1.56 -28.30 16 18 C -0.33 -19.07 10.16 84.04 0.85 -18.22 16 19 H 0.05 3.63 7.39 -2.91 -0.02 3.61 16 20 C -0.02 -0.91 5.50 84.93 0.47 -0.45 16 21 N -0.94 -56.26 13.96 21.66 0.30 -55.96 16 22 Si 0.97 37.60 27.73 68.60 1.90 39.50 16 23 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 24 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 25 H -0.23 -7.28 6.52 99.48 0.65 -6.63 16 26 C 0.14 3.24 3.48 45.34 0.16 3.40 16 27 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 28 C -0.14 -4.11 8.19 71.98 0.59 -3.52 16 29 H 0.11 0.90 8.06 -2.91 -0.02 0.88 16 30 H 0.11 0.77 7.90 -2.91 -0.02 0.75 16 31 H 0.10 1.65 8.06 -2.91 -0.02 1.62 16 32 H 0.07 0.61 7.86 -2.39 -0.02 0.59 16 33 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.11 0.87 7.85 -2.39 -0.02 0.85 16 35 H 0.11 0.78 8.14 -2.38 -0.02 0.77 16 36 H 0.10 0.36 7.48 -2.39 -0.02 0.35 16 37 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.07 0.95 7.81 -2.39 -0.02 0.93 16 39 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.35 10.06 7.25 -89.69 -0.65 9.41 16 41 H 0.09 1.66 8.13 -2.39 -0.02 1.64 16 42 H 0.12 2.52 8.08 -2.39 -0.02 2.50 16 43 H 0.39 14.28 5.77 -92.71 -0.53 13.75 16 44 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 45 H 0.05 1.37 7.88 -2.39 -0.02 1.35 16 46 H 0.04 1.23 6.76 -2.39 -0.02 1.22 16 47 H 0.07 2.20 7.40 -2.39 -0.02 2.18 16 Total: -1.00 -89.07 388.01 1.61 -87.46 By element: Atomic # 1 Polarization: 36.52 SS G_CDS: -0.27 Total: 36.25 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 6.94 Total: 17.24 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -5.89 Total: -117.59 kcal Atomic # 8 Polarization: -61.78 SS G_CDS: -1.08 Total: -62.87 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 1.90 Total: 39.50 kcal Total: -89.07 1.61 -87.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676633711.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.895 kcal (2) G-P(sol) polarization free energy of solvation -89.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds