Wall clock time and date at job start Fri Apr 10 2020 18:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 120.00208 * 2 1 4 4 O 1.42895 * 109.47528 * 134.99767 * 3 2 1 5 5 C 1.42894 * 114.00381 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47504 * 180.02562 * 5 4 3 7 7 O 1.21284 * 119.99596 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00256 * 180.02562 * 6 5 4 9 9 C 1.47016 * 125.64702 * 359.95591 * 8 6 5 10 10 C 1.54324 * 107.27119 * 181.09155 * 9 8 6 11 11 C 1.55162 * 102.94003 * 22.19690 * 10 9 8 12 12 H 1.09004 * 111.03748 * 82.58390 * 11 10 9 13 13 C 1.53000 * 111.00395 * 206.42105 * 11 10 9 14 14 N 1.46895 * 109.47239 * 178.64814 * 13 11 10 15 15 C 1.46896 * 111.00306 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.47452 * 180.02562 * 15 14 13 17 17 O 1.21292 * 119.99879 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00137 * 180.02562 * 16 15 14 19 19 C 1.37105 * 119.99968 * 180.02562 * 18 16 15 20 20 H 1.08004 * 119.99700 * 359.71718 * 19 18 16 21 21 C 1.38942 * 119.99884 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00042 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00016 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46819 * 59.99994 * 23 21 19 25 25 H 1.48503 * 109.47158 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47620 * 300.00141 * 23 21 19 27 27 C 1.47424 * 125.64828 * 179.97438 * 8 6 5 28 28 H 1.08004 * 119.99278 * 0.02562 * 1 2 3 29 29 H 1.07998 * 119.99989 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.00021 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47539 * 14.99669 * 3 2 1 32 32 H 1.08999 * 109.47182 * 254.99845 * 3 2 1 33 33 H 1.09000 * 109.47289 * 60.00005 * 5 4 3 34 34 H 1.09005 * 109.47279 * 300.00002 * 5 4 3 35 35 H 1.08996 * 109.88524 * 300.51488 * 9 8 6 36 36 H 1.09006 * 109.88177 * 61.52575 * 9 8 6 37 37 H 1.08996 * 110.72525 * 263.83474 * 10 9 8 38 38 H 1.09003 * 110.71962 * 140.55168 * 10 9 8 39 39 H 1.09004 * 109.46929 * 58.64583 * 13 11 10 40 40 H 1.09002 * 109.47089 * 298.64822 * 13 11 10 41 41 H 1.00900 * 111.00389 * 303.95792 * 14 13 11 42 42 H 1.09000 * 109.47017 * 60.00110 * 15 14 13 43 43 H 1.08996 * 109.47227 * 300.00430 * 15 14 13 44 44 H 0.96999 * 120.00047 * 359.97438 * 18 16 15 45 45 H 0.97005 * 120.00019 * 180.02562 * 22 21 19 46 46 H 1.09005 * 110.36395 * 36.99900 * 27 8 6 47 47 H 1.08998 * 110.36787 * 274.67658 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9085 2.4348 1.0320 6 6 4.9948 2.2564 2.0612 7 8 5.0898 1.2103 2.6674 8 7 5.8600 3.2597 2.3087 9 6 5.8590 4.5740 1.6500 10 6 7.0406 5.3788 2.2313 11 6 7.9821 4.2710 2.7734 12 1 8.6017 3.8595 1.9766 13 6 8.8473 4.7992 3.9196 14 7 9.7006 3.7169 4.4278 15 6 10.5476 4.1885 5.5314 16 6 11.4073 3.0535 6.0253 17 8 11.3230 1.9595 5.5084 18 7 12.2698 3.2542 7.0413 19 6 13.0523 2.2217 7.4902 20 1 12.9743 1.2465 7.0326 21 6 13.9419 2.4287 8.5373 22 7 14.0336 3.6141 9.0970 23 14 15.0075 1.0219 9.1494 24 1 15.8659 0.5325 8.0408 25 1 15.8643 1.4988 10.2647 26 1 14.1401 -0.0839 9.6289 27 6 6.9643 3.2208 3.2846 28 1 -0.5399 0.9354 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3857 2.1161 0.2659 32 1 2.4756 1.4867 -0.9926 33 1 3.2690 3.2696 1.3191 34 1 4.3589 2.6395 0.0607 35 1 5.9883 4.4499 0.5748 36 1 4.9206 5.0899 1.8533 37 1 6.7044 6.0285 3.0392 38 1 7.5349 5.9567 1.4504 39 1 8.2050 5.1628 4.7218 40 1 9.4726 5.6149 3.5567 41 1 9.1468 2.9223 4.7107 42 1 9.9176 4.5481 6.3450 43 1 11.1847 4.9998 5.1794 44 1 12.3375 4.1291 7.4544 45 1 14.6549 3.7587 9.8278 46 1 7.4188 2.2302 3.3039 47 1 6.6038 3.4931 4.2765 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690701141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:43 Heat of formation + Delta-G solvation = -89.109103 kcal Electronic energy + Delta-G solvation = -26397.435801 eV Core-core repulsion = 22388.032668 eV Total energy + Delta-G solvation = -4009.403133 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.41378 -38.73917 -38.20471 -37.51023 -35.38414 -34.26411 -33.84478 -32.21685 -31.18224 -29.73983 -28.98381 -26.95656 -25.96487 -24.80717 -23.81428 -22.55002 -20.67133 -20.46334 -19.63839 -19.15893 -17.88141 -17.71692 -17.22662 -16.78796 -16.49594 -15.99445 -15.73558 -15.42281 -14.85248 -14.69401 -14.51674 -14.40527 -13.90696 -13.80329 -13.61521 -13.47043 -13.15894 -13.13089 -12.68972 -12.57065 -12.42619 -12.37264 -11.98551 -11.57624 -11.51179 -11.43221 -11.24056 -11.02304 -10.96876 -10.91177 -10.43072 -10.41814 -10.18809 -10.00969 -9.77449 -9.47564 -8.92328 -8.45524 -8.06711 -7.93624 -6.39388 -3.80117 1.66956 2.36495 2.42767 3.22705 3.27939 3.32853 3.51545 3.92648 3.96956 4.15805 4.21533 4.29493 4.47874 4.56599 4.59703 4.64105 4.67932 4.77159 4.88256 4.93864 5.02924 5.04080 5.08842 5.22690 5.27955 5.28971 5.41493 5.45387 5.53813 5.56465 5.69643 5.79869 5.83680 5.95369 5.98716 6.11340 6.12538 6.17561 6.28449 6.62042 7.18160 7.21351 7.57560 7.63264 7.92997 8.08665 8.63820 9.20369 9.56632 10.08372 10.78282 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.020411 B = 0.001748 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.485835 B =16015.607470 C =17187.163870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.150 4.150 3 C 0.087 3.913 4 O -0.360 6.360 5 C 0.051 3.949 6 C 0.527 3.473 7 O -0.513 6.513 8 N -0.619 5.619 9 C 0.098 3.902 10 C -0.126 4.126 11 C -0.097 4.097 12 H 0.097 0.903 13 C 0.071 3.929 14 N -0.671 5.671 15 C 0.051 3.949 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.903 5.903 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.108 3.892 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.119 0.881 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.030 0.970 40 H 0.078 0.922 41 H 0.350 0.650 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.087 0.913 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.621 7.907 -18.474 31.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.168 4.168 3 C 0.011 3.989 4 O -0.278 6.278 5 C -0.029 4.029 6 C 0.314 3.686 7 O -0.387 6.387 8 N -0.356 5.356 9 C -0.025 4.025 10 C -0.165 4.165 11 C -0.117 4.117 12 H 0.116 0.884 13 C -0.059 4.059 14 N -0.304 5.304 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.014 4.014 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.137 0.863 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.048 0.952 40 H 0.096 0.904 41 H 0.170 0.830 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.106 0.894 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -23.052 6.499 -18.700 30.386 hybrid contribution -0.083 0.377 1.144 1.207 sum -23.135 6.875 -17.557 29.845 Atomic orbital electron populations 1.23847 0.95474 1.02363 0.99937 1.22722 0.95633 0.98204 1.00281 1.21622 0.88672 0.96317 0.92308 1.88057 1.44322 1.34899 1.60503 1.22152 0.93007 0.89198 0.98563 1.19855 0.81999 0.82938 0.83826 1.90783 1.71743 1.26283 1.49867 1.48407 1.31654 1.14267 1.41314 1.22100 0.99571 0.83437 0.97389 1.22679 0.94956 0.97404 1.01411 1.22420 0.95194 0.94927 0.99118 0.88441 1.21889 0.94246 0.94599 0.95183 1.60063 1.25501 1.07974 1.36812 1.21666 0.96282 0.97767 0.92458 1.19816 0.84630 0.89581 0.83461 1.90534 1.70647 1.25975 1.59438 1.41851 1.34817 1.13233 1.30141 1.19670 1.15875 0.92718 1.14689 0.87961 1.25249 0.98252 0.97686 0.96693 1.69605 1.37881 1.21689 1.25227 0.85915 0.79515 0.80554 0.78222 1.19887 1.20993 1.19919 1.22384 0.86017 1.01347 0.91650 0.88426 0.87624 0.86298 0.92553 0.92028 0.90312 0.90208 0.91207 0.91291 0.90200 0.89493 0.95175 0.90384 0.83040 0.93850 0.89538 0.77475 0.91858 0.89433 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.05 14.31 29.01 0.42 -0.63 16 2 C -0.15 -1.12 9.89 -36.03 -0.36 -1.48 16 3 C 0.09 0.63 6.35 36.00 0.23 0.86 16 4 O -0.36 -3.99 9.86 -55.14 -0.54 -4.54 16 5 C 0.05 0.43 5.61 36.01 0.20 0.63 16 6 C 0.53 6.58 7.93 -10.98 -0.09 6.50 16 7 O -0.51 -9.11 16.75 -14.36 -0.24 -9.35 16 8 N -0.62 -6.34 3.33 -170.51 -0.57 -6.90 16 9 C 0.10 0.59 6.49 -3.07 -0.02 0.57 16 10 C -0.13 -0.76 6.42 -24.89 -0.16 -0.92 16 11 C -0.10 -0.91 3.29 -88.46 -0.29 -1.21 16 12 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 13 C 0.07 0.78 5.19 -3.83 -0.02 0.76 16 14 N -0.67 -10.60 6.12 -115.07 -0.70 -11.31 16 15 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 16 C 0.44 10.51 7.82 -10.99 -0.09 10.43 16 17 O -0.58 -16.13 15.78 5.55 0.09 -16.05 16 18 N -0.56 -14.44 5.29 -10.96 -0.06 -14.50 16 19 C -0.30 -8.49 9.68 -14.93 -0.14 -8.64 16 20 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.71 13.05 55.50 0.72 -23.98 16 23 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 C 0.11 1.23 5.60 -2.52 -0.01 1.22 16 28 H 0.10 0.45 7.90 -52.48 -0.41 0.03 16 29 H 0.11 0.51 8.06 -52.49 -0.42 0.08 16 30 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.06 0.31 7.86 -51.93 -0.41 -0.10 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.44 8.04 -51.93 -0.42 0.02 16 38 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.03 0.31 8.10 -51.93 -0.42 -0.11 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.35 5.90 7.60 -39.29 -0.30 5.60 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.09 1.23 7.94 -51.93 -0.41 0.82 16 47 H 0.07 0.78 8.00 -51.93 -0.42 0.36 16 LS Contribution 397.65 15.07 5.99 5.99 Total: -1.00 -36.27 397.65 -8.49 -44.75 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -7.69 Total: 10.09 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -0.46 Total: 9.47 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.61 Total: -56.69 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.70 Total: -29.94 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.27 -8.49 -44.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690701141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.356 kcal (2) G-P(sol) polarization free energy of solvation -36.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds