Wall clock time and date at job start Fri Apr 10 2020 18:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 120.00208 * 2 1 4 4 O 1.42895 * 109.47528 * 134.99767 * 3 2 1 5 5 C 1.42894 * 114.00381 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47504 * 180.02562 * 5 4 3 7 7 O 1.21284 * 119.99596 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00256 * 180.02562 * 6 5 4 9 9 C 1.47016 * 125.64702 * 359.95591 * 8 6 5 10 10 C 1.54324 * 107.27119 * 181.09155 * 9 8 6 11 11 C 1.55162 * 102.94003 * 22.19690 * 10 9 8 12 12 H 1.09004 * 111.03748 * 82.58390 * 11 10 9 13 13 C 1.53000 * 111.00395 * 206.42105 * 11 10 9 14 14 N 1.46895 * 109.47239 * 178.64814 * 13 11 10 15 15 C 1.46896 * 111.00306 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.47452 * 180.02562 * 15 14 13 17 17 O 1.21292 * 119.99879 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00137 * 180.02562 * 16 15 14 19 19 C 1.37105 * 119.99968 * 180.02562 * 18 16 15 20 20 H 1.08004 * 119.99700 * 359.71718 * 19 18 16 21 21 C 1.38942 * 119.99884 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00042 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00016 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46819 * 59.99994 * 23 21 19 25 25 H 1.48503 * 109.47158 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47620 * 300.00141 * 23 21 19 27 27 C 1.47424 * 125.64828 * 179.97438 * 8 6 5 28 28 H 1.08004 * 119.99278 * 0.02562 * 1 2 3 29 29 H 1.07998 * 119.99989 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.00021 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47539 * 14.99669 * 3 2 1 32 32 H 1.08999 * 109.47182 * 254.99845 * 3 2 1 33 33 H 1.09000 * 109.47289 * 60.00005 * 5 4 3 34 34 H 1.09005 * 109.47279 * 300.00002 * 5 4 3 35 35 H 1.08996 * 109.88524 * 300.51488 * 9 8 6 36 36 H 1.09006 * 109.88177 * 61.52575 * 9 8 6 37 37 H 1.08996 * 110.72525 * 263.83474 * 10 9 8 38 38 H 1.09003 * 110.71962 * 140.55168 * 10 9 8 39 39 H 1.09004 * 109.46929 * 58.64583 * 13 11 10 40 40 H 1.09002 * 109.47089 * 298.64822 * 13 11 10 41 41 H 1.00900 * 111.00389 * 303.95792 * 14 13 11 42 42 H 1.09000 * 109.47017 * 60.00110 * 15 14 13 43 43 H 1.08996 * 109.47227 * 300.00430 * 15 14 13 44 44 H 0.96999 * 120.00047 * 359.97438 * 18 16 15 45 45 H 0.97005 * 120.00019 * 180.02562 * 22 21 19 46 46 H 1.09005 * 110.36395 * 36.99900 * 27 8 6 47 47 H 1.08998 * 110.36787 * 274.67658 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9085 2.4348 1.0320 6 6 4.9948 2.2564 2.0612 7 8 5.0898 1.2103 2.6674 8 7 5.8600 3.2597 2.3087 9 6 5.8590 4.5740 1.6500 10 6 7.0406 5.3788 2.2313 11 6 7.9821 4.2710 2.7734 12 1 8.6017 3.8595 1.9766 13 6 8.8473 4.7992 3.9196 14 7 9.7006 3.7169 4.4278 15 6 10.5476 4.1885 5.5314 16 6 11.4073 3.0535 6.0253 17 8 11.3230 1.9595 5.5084 18 7 12.2698 3.2542 7.0413 19 6 13.0523 2.2217 7.4902 20 1 12.9743 1.2465 7.0326 21 6 13.9419 2.4287 8.5373 22 7 14.0336 3.6141 9.0970 23 14 15.0075 1.0219 9.1494 24 1 15.8659 0.5325 8.0408 25 1 15.8643 1.4988 10.2647 26 1 14.1401 -0.0839 9.6289 27 6 6.9643 3.2208 3.2846 28 1 -0.5399 0.9354 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3857 2.1161 0.2659 32 1 2.4756 1.4867 -0.9926 33 1 3.2690 3.2696 1.3191 34 1 4.3589 2.6395 0.0607 35 1 5.9883 4.4499 0.5748 36 1 4.9206 5.0899 1.8533 37 1 6.7044 6.0285 3.0392 38 1 7.5349 5.9567 1.4504 39 1 8.2050 5.1628 4.7218 40 1 9.4726 5.6149 3.5567 41 1 9.1468 2.9223 4.7107 42 1 9.9176 4.5481 6.3450 43 1 11.1847 4.9998 5.1794 44 1 12.3375 4.1291 7.4544 45 1 14.6549 3.7587 9.8278 46 1 7.4188 2.2302 3.3039 47 1 6.6038 3.4931 4.2765 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690701141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:42 Heat of formation + Delta-G solvation = -116.946676 kcal Electronic energy + Delta-G solvation = -26398.642929 eV Core-core repulsion = 22388.032668 eV Total energy + Delta-G solvation = -4010.610261 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.24487 -40.17431 -39.33496 -38.40886 -36.63134 -35.82703 -34.79103 -33.37116 -33.06210 -30.45075 -29.83646 -28.19682 -26.84883 -26.09617 -25.00649 -23.38939 -21.47267 -21.08102 -20.99216 -20.32172 -19.89289 -18.47781 -18.12992 -17.68137 -17.43565 -17.14955 -16.73045 -16.48266 -16.42279 -15.98947 -15.64026 -15.44876 -15.08405 -15.01902 -14.79301 -14.40641 -14.10376 -13.95925 -13.87136 -13.51260 -13.32926 -13.17358 -13.11145 -13.08934 -12.95802 -12.65728 -12.44850 -12.14650 -12.02048 -11.90460 -11.81601 -11.59475 -11.51580 -11.04417 -10.92418 -10.36286 -10.27858 -10.02507 -9.74501 -9.32605 -8.47561 -5.96410 1.16163 1.38934 1.40746 1.47480 1.51700 1.71626 2.04726 2.28662 2.88140 2.96766 3.19600 3.40083 3.52855 3.63564 3.75017 3.95666 4.03155 4.12102 4.17878 4.22273 4.29114 4.32587 4.39537 4.43524 4.45263 4.49806 4.57399 4.58902 4.65079 4.74464 4.83786 4.89526 4.96519 5.00629 5.11141 5.25226 5.39492 5.40364 5.64138 5.68398 5.88539 6.07019 6.10944 6.35074 6.43995 6.59704 7.05632 7.11838 7.55371 8.11568 8.69493 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.020411 B = 0.001748 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.485835 B =16015.607470 C =17187.163870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.181 4.181 3 C 0.085 3.915 4 O -0.402 6.402 5 C 0.057 3.943 6 C 0.513 3.487 7 O -0.585 6.585 8 N -0.616 5.616 9 C 0.091 3.909 10 C -0.114 4.114 11 C -0.090 4.090 12 H 0.084 0.916 13 C 0.073 3.927 14 N -0.690 5.690 15 C 0.066 3.934 16 C 0.434 3.566 17 O -0.627 6.627 18 N -0.572 5.572 19 C -0.338 4.338 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.918 5.918 23 Si 0.992 3.008 24 H -0.272 1.272 25 H -0.268 1.268 26 H -0.274 1.274 27 C 0.104 3.896 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.046 0.954 40 H 0.096 0.904 41 H 0.339 0.661 42 H 0.067 0.933 43 H 0.110 0.890 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.045 0.955 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.858 10.995 -19.675 33.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.199 4.199 3 C 0.010 3.990 4 O -0.322 6.322 5 C -0.022 4.022 6 C 0.303 3.697 7 O -0.465 6.465 8 N -0.351 5.351 9 C -0.030 4.030 10 C -0.152 4.152 11 C -0.109 4.109 12 H 0.102 0.898 13 C -0.056 4.056 14 N -0.322 5.322 15 C -0.066 4.066 16 C 0.221 3.779 17 O -0.514 6.514 18 N -0.209 5.209 19 C -0.468 4.468 20 H 0.094 0.906 21 C -0.210 4.210 22 N -0.559 5.559 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.192 1.192 26 H -0.199 1.199 27 C -0.019 4.019 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.130 0.870 39 H 0.064 0.936 40 H 0.114 0.886 41 H 0.157 0.843 42 H 0.085 0.915 43 H 0.128 0.872 44 H 0.231 0.769 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.295 9.687 -19.929 32.882 hybrid contribution 0.252 -0.566 1.486 1.610 sum -24.043 9.121 -18.443 31.645 Atomic orbital electron populations 1.24064 0.94929 1.03575 0.97619 1.22806 0.96428 0.98152 1.02522 1.21804 0.88198 0.96593 0.92430 1.88012 1.45649 1.36604 1.61920 1.22281 0.92180 0.89326 0.98441 1.20804 0.82758 0.82220 0.83921 1.90741 1.73813 1.29196 1.52748 1.48545 1.30329 1.15557 1.40696 1.22481 1.01061 0.81159 0.98326 1.22709 0.93794 0.96260 1.02413 1.22310 0.94797 0.95648 0.98159 0.89768 1.22029 0.94257 0.93453 0.95880 1.60096 1.26661 1.09355 1.36093 1.21538 0.96116 0.95172 0.93788 1.21010 0.84071 0.90700 0.82097 1.90502 1.71807 1.28496 1.60564 1.41912 1.35222 1.12903 1.30862 1.19632 1.18105 0.92771 1.16263 0.90584 1.26006 0.98713 1.00180 0.96116 1.69658 1.38124 1.22819 1.25281 0.85007 0.77852 0.77604 0.77964 1.19776 1.19198 1.19932 1.22298 0.87203 0.99971 0.92414 0.86666 0.86929 0.88021 0.90433 0.90339 0.86850 0.87114 0.88926 0.88396 0.88883 0.87026 0.93632 0.88577 0.84334 0.91488 0.87182 0.76851 0.91229 0.93622 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 14.31 67.77 0.97 -0.75 16 2 C -0.18 -2.67 9.89 25.64 0.25 -2.41 16 3 C 0.09 1.11 6.35 71.23 0.45 1.56 16 4 O -0.40 -8.83 9.86 -129.94 -1.28 -10.11 16 5 C 0.06 0.86 5.61 71.24 0.40 1.26 16 6 C 0.51 13.00 7.93 87.66 0.69 13.70 16 7 O -0.59 -22.46 16.75 15.99 0.27 -22.19 16 8 N -0.62 -12.11 3.33 -811.76 -2.70 -14.81 16 9 C 0.09 0.75 6.49 86.73 0.56 1.32 16 10 C -0.11 -0.92 6.42 31.78 0.20 -0.71 16 11 C -0.09 -1.56 3.29 -9.39 -0.03 -1.59 16 12 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 13 C 0.07 1.44 5.19 86.30 0.45 1.89 16 14 N -0.69 -21.68 6.12 -517.96 -3.17 -24.85 16 15 C 0.07 2.25 6.17 85.56 0.53 2.78 16 16 C 0.43 21.21 7.82 87.66 0.69 21.89 16 17 O -0.63 -36.30 15.78 -3.07 -0.05 -36.35 16 18 N -0.57 -29.92 5.29 -306.99 -1.62 -31.54 16 19 C -0.34 -19.70 9.68 84.04 0.81 -18.89 16 20 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 21 C -0.01 -0.55 5.50 84.92 0.47 -0.08 16 22 N -0.92 -49.91 13.05 21.66 0.28 -49.63 16 23 Si 0.99 43.83 29.55 68.60 2.03 45.86 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 27 C 0.10 2.45 5.60 86.86 0.49 2.93 16 28 H 0.12 0.77 7.90 -2.91 -0.02 0.75 16 29 H 0.11 0.96 8.06 -2.91 -0.02 0.94 16 30 H 0.10 1.77 8.06 -2.91 -0.02 1.74 16 31 H 0.08 0.64 7.86 -2.39 -0.02 0.62 16 32 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.11 0.89 8.14 -2.39 -0.02 0.88 16 34 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 37 H 0.09 0.57 8.04 -2.39 -0.02 0.55 16 38 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.05 0.80 8.10 -2.38 -0.02 0.78 16 40 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.34 11.92 7.60 -89.69 -0.68 11.24 16 42 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 44 H 0.40 19.51 7.90 -92.71 -0.73 18.78 16 45 H 0.28 14.16 8.31 -92.70 -0.77 13.39 16 46 H 0.05 1.44 7.94 -2.38 -0.02 1.42 16 47 H 0.06 1.53 8.00 -2.39 -0.02 1.51 16 Total: -1.00 -85.33 397.65 0.24 -85.09 By element: Atomic # 1 Polarization: 36.11 SS G_CDS: -0.44 Total: 35.66 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: 6.93 Total: 22.88 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -7.21 Total: -120.83 kcal Atomic # 8 Polarization: -67.59 SS G_CDS: -1.06 Total: -68.65 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -85.33 0.24 -85.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690701141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.859 kcal (2) G-P(sol) polarization free energy of solvation -85.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds