Wall clock time and date at job start Fri Apr 10 2020 18:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.90935 * 2 1 4 4 C 1.53999 * 109.91649 * 238.89874 * 2 1 3 5 5 H 1.09000 * 110.30719 * 358.43890 * 4 2 1 6 6 N 1.46498 * 110.30806 * 120.50394 * 4 2 1 7 7 C 1.34777 * 119.99828 * 203.33442 * 6 4 2 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 4 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 4 10 10 H 1.08999 * 109.86703 * 303.99685 * 9 7 6 11 11 C 1.54104 * 109.87613 * 64.99941 * 9 7 6 12 12 C 1.54810 * 104.18271 * 121.45707 * 11 9 7 13 13 C 1.54992 * 102.09671 * 20.88033 * 12 11 9 14 14 O 1.43739 * 109.88346 * 182.83185 * 9 7 6 15 15 C 1.54601 * 105.22536 * 239.47186 * 4 2 1 16 16 C 1.55192 * 102.80192 * 338.01246 * 15 4 2 17 17 N 1.47900 * 109.91781 * 121.31051 * 2 1 3 18 18 C 1.46899 * 110.99884 * 265.19268 * 17 2 1 19 19 C 1.50704 * 109.47245 * 170.00181 * 18 17 2 20 20 O 1.21291 * 119.99483 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99987 * 180.02562 * 19 18 17 22 22 C 1.37092 * 120.00083 * 179.97438 * 21 19 18 23 23 H 1.08008 * 119.99941 * 0.02562 * 22 21 19 24 24 C 1.38955 * 120.00587 * 180.02562 * 22 21 19 25 25 N 1.31412 * 119.99409 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00243 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47384 * 60.00049 * 26 24 22 28 28 H 1.48497 * 109.46968 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.46997 * 299.99853 * 26 24 22 30 30 H 1.08995 * 109.46997 * 181.10230 * 1 2 3 31 31 H 1.09001 * 109.46470 * 301.09955 * 1 2 3 32 32 H 1.08999 * 109.46806 * 61.09809 * 1 2 3 33 33 H 0.97001 * 120.00384 * 23.61888 * 6 4 2 34 34 H 1.08994 * 110.48571 * 240.13281 * 11 9 7 35 35 H 1.08993 * 110.48848 * 2.78191 * 11 9 7 36 36 H 1.09009 * 110.90604 * 139.08129 * 12 11 9 37 37 H 1.09003 * 110.90631 * 262.67941 * 12 11 9 38 38 H 1.09003 * 110.61479 * 81.47190 * 13 12 11 39 39 H 1.08999 * 110.61829 * 204.31888 * 13 12 11 40 40 H 1.08998 * 110.71906 * 96.35103 * 15 4 2 41 41 H 1.08994 * 110.72001 * 219.63304 * 15 4 2 42 42 H 1.09004 * 110.68260 * 278.98839 * 16 15 4 43 43 H 1.08999 * 110.63872 * 155.86292 * 16 15 4 44 44 H 1.09002 * 109.47340 * 289.99999 * 18 17 2 45 45 H 1.08997 * 109.47311 * 50.00019 * 18 17 2 46 46 H 0.97002 * 119.99868 * 0.02562 * 21 19 18 47 47 H 0.97000 * 119.99523 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0248 0.0000 4 6 2.0546 -0.7479 -1.2398 5 1 1.2227 -1.1353 -1.8280 6 7 2.8835 0.1415 -2.0571 7 6 3.0551 -0.1144 -3.3692 8 8 2.5192 -1.0780 -3.8744 9 6 3.9128 0.7970 -4.2088 10 1 3.5462 1.8209 -4.1368 11 6 5.3756 0.7292 -3.7285 12 6 6.1641 0.2672 -4.9781 13 6 5.1971 0.6430 -6.1296 14 8 3.8924 0.3625 -5.5788 15 6 2.9053 -1.9120 -0.6818 16 6 3.2682 -1.4199 0.7446 17 7 2.0338 -0.7226 1.1880 18 6 2.3212 0.2081 2.2876 19 6 2.5939 -0.5721 3.5478 20 8 2.5524 -1.7841 3.5316 21 7 2.8829 0.0771 4.6930 22 6 3.1304 -0.6325 5.8395 23 1 3.0943 -1.7119 5.8250 24 6 3.4278 0.0367 7.0205 25 7 3.4713 1.3500 7.0383 26 14 3.7644 -0.9303 8.5828 27 1 4.9334 -1.8214 8.3713 28 1 4.0546 0.0106 9.6944 29 1 2.5734 -1.7489 8.9245 30 1 -0.3633 -1.0274 0.0198 31 1 -0.3632 0.5308 0.8800 32 1 -0.3633 0.4967 -0.8997 33 1 3.3122 0.9122 -1.6532 34 1 5.7165 1.7123 -3.4042 35 1 5.4791 0.0032 -2.9222 36 1 7.1049 0.8105 -5.0672 37 1 6.3386 -0.8085 -4.9522 38 1 5.2894 1.7002 -6.3786 39 1 5.3868 0.0251 -7.0073 40 1 2.3199 -2.8303 -0.6366 41 1 3.8038 -2.0552 -1.2821 42 1 4.1098 -0.7280 0.7106 43 1 3.4889 -2.2642 1.3977 44 1 3.1952 0.8090 2.0360 45 1 1.4634 0.8621 2.4436 46 1 2.9150 1.0465 4.7062 47 1 3.6793 1.8172 7.8625 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692137902.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:45 Heat of formation + Delta-G solvation = -133.856251 kcal Electronic energy + Delta-G solvation = -28084.493770 eV Core-core repulsion = 24073.150255 eV Total energy + Delta-G solvation = -4011.343515 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.64635 -40.67856 -39.70683 -38.82333 -36.00306 -35.39265 -33.35092 -33.16177 -32.30660 -32.29974 -30.48309 -28.06958 -26.45969 -25.81789 -24.49058 -22.79062 -22.55012 -21.49190 -21.22556 -20.78161 -19.85965 -18.62036 -17.99492 -17.54749 -17.32998 -16.78803 -16.53804 -16.24573 -16.19163 -15.99399 -15.71230 -15.27678 -15.08112 -15.03148 -14.60318 -14.46303 -14.25311 -13.85070 -13.64289 -13.45846 -13.00254 -12.95873 -12.84137 -12.75380 -12.65261 -12.45412 -12.40117 -12.34365 -12.18467 -12.13404 -12.10576 -11.87634 -11.76621 -11.46204 -11.15670 -10.53197 -10.30452 -10.16178 -9.98313 -9.32347 -8.44846 -5.92770 1.40190 1.42088 1.50375 1.52471 1.82986 2.09230 2.29551 2.77161 3.03226 3.22142 3.32654 3.46217 3.47663 3.67504 3.73639 3.88040 4.01087 4.04148 4.16362 4.26191 4.27643 4.33314 4.40418 4.41687 4.44519 4.55693 4.71308 4.72375 4.78150 4.79991 4.89022 4.91060 4.98011 4.99833 5.03114 5.11270 5.12901 5.35180 5.41060 5.43398 5.77957 5.87072 5.98080 6.12120 6.47342 6.63753 7.15885 7.17043 7.59913 8.16653 8.72362 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.002334 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.796251 B =11994.095131 C =12548.457596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.063 3.937 3 H 0.084 0.916 4 C 0.148 3.852 5 H 0.089 0.911 6 N -0.705 5.705 7 C 0.511 3.489 8 O -0.572 6.572 9 C 0.060 3.940 10 H 0.123 0.877 11 C -0.145 4.145 12 C -0.153 4.153 13 C 0.037 3.963 14 O -0.387 6.387 15 C -0.122 4.122 16 C 0.046 3.954 17 N -0.508 5.508 18 C 0.051 3.949 19 C 0.442 3.558 20 O -0.617 6.617 21 N -0.575 5.575 22 C -0.331 4.331 23 H 0.076 0.924 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.990 3.010 27 H -0.273 1.273 28 H -0.270 1.270 29 H -0.274 1.274 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.415 0.585 34 H 0.120 0.880 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.110 0.890 46 H 0.396 0.604 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.532 7.870 -22.767 24.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.046 4.046 3 H 0.102 0.898 4 C 0.042 3.958 5 H 0.107 0.893 6 N -0.359 5.359 7 C 0.298 3.702 8 O -0.450 6.450 9 C -0.001 4.001 10 H 0.141 0.859 11 C -0.182 4.182 12 C -0.191 4.191 13 C -0.038 4.038 14 O -0.306 6.306 15 C -0.161 4.161 16 C -0.081 4.081 17 N -0.233 5.233 18 C -0.080 4.080 19 C 0.230 3.770 20 O -0.502 6.502 21 N -0.213 5.213 22 C -0.460 4.460 23 H 0.094 0.906 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.813 3.187 27 H -0.198 1.198 28 H -0.195 1.195 29 H -0.199 1.199 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.253 0.747 34 H 0.138 0.862 35 H 0.093 0.907 36 H 0.129 0.871 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.128 0.872 46 H 0.230 0.770 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.585 6.064 -22.900 23.959 hybrid contribution 0.966 0.646 1.131 1.621 sum 4.551 6.710 -21.768 23.229 Atomic orbital electron populations 1.21729 0.92626 1.02327 1.02345 1.22665 0.97395 0.96895 0.87599 0.89800 1.21674 0.93305 0.89871 0.90957 0.89329 1.45934 1.51376 1.30424 1.08148 1.21107 0.80929 0.85657 0.82550 1.90712 1.49818 1.31343 1.73099 1.22823 0.96685 0.97632 0.82958 0.85916 1.23020 0.90922 1.05068 0.99231 1.23165 1.00050 1.02321 0.93533 1.23876 0.80459 1.02150 0.97340 1.88976 1.34407 1.84502 1.22730 1.22845 1.00191 0.98429 0.94681 1.23181 0.91008 0.98582 0.95377 1.64365 1.27941 1.25751 1.05277 1.21927 1.02718 0.93813 0.89571 1.20792 0.82070 0.88477 0.85709 1.90495 1.57511 1.16007 1.86210 1.41909 1.62265 1.09358 1.07797 1.19579 1.46347 0.92466 0.87645 0.90561 1.25978 0.96717 0.96727 1.01791 1.69657 1.49111 1.07431 1.29925 0.85039 0.78753 0.77805 0.77053 1.19789 1.19472 1.19919 0.93018 0.92124 0.90491 0.74732 0.86203 0.90677 0.87133 0.91686 0.89549 0.88281 0.91046 0.90513 0.92923 0.92192 0.90515 0.87181 0.76987 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.32 71.98 0.67 -2.13 16 2 C 0.06 1.38 2.82 45.06 0.13 1.50 16 3 H 0.08 1.41 7.25 -2.39 -0.02 1.39 16 4 C 0.15 3.29 2.95 45.87 0.14 3.42 16 5 H 0.09 2.27 7.15 -2.39 -0.02 2.25 16 6 N -0.70 -12.08 5.04 -438.35 -2.21 -14.29 16 7 C 0.51 11.21 6.95 87.66 0.61 11.82 16 8 O -0.57 -18.71 16.20 15.68 0.25 -18.45 16 9 C 0.06 0.91 3.84 30.22 0.12 1.03 16 10 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 11 C -0.14 -1.40 6.61 31.59 0.21 -1.19 16 12 C -0.15 -1.48 7.15 31.89 0.23 -1.25 16 13 C 0.04 0.44 7.72 72.66 0.56 1.00 16 14 O -0.39 -8.15 10.73 -130.26 -1.40 -9.55 16 15 C -0.12 -3.18 6.80 31.89 0.22 -2.96 16 16 C 0.05 1.39 5.94 86.74 0.52 1.91 16 17 N -0.51 -15.55 4.54 -862.05 -3.91 -19.46 16 18 C 0.05 1.65 5.20 85.56 0.44 2.09 16 19 C 0.44 20.57 7.61 87.66 0.67 21.23 16 20 O -0.62 -33.91 14.64 -3.06 -0.04 -33.96 16 21 N -0.58 -28.92 5.29 -306.98 -1.62 -30.54 16 22 C -0.33 -18.61 9.68 84.04 0.81 -17.79 16 23 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 24 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 25 N -0.92 -48.92 13.05 21.66 0.28 -48.64 16 26 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 28 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 29 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.42 4.41 8.31 -92.71 -0.77 3.64 16 34 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.07 0.89 7.69 -2.39 -0.02 0.87 16 36 H 0.11 0.51 8.14 -2.38 -0.02 0.49 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.08 1.90 8.05 -2.39 -0.02 1.88 16 42 H 0.05 1.41 7.81 -2.39 -0.02 1.39 16 43 H 0.06 2.30 7.10 -2.39 -0.02 2.29 16 44 H 0.08 2.07 7.83 -2.39 -0.02 2.06 16 45 H 0.11 3.11 8.08 -2.39 -0.02 3.09 16 46 H 0.40 18.73 7.90 -92.71 -0.73 17.99 16 47 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -77.77 382.53 -1.36 -79.13 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: -0.51 Total: 32.53 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 5.78 Total: 18.49 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -7.46 Total: -112.93 kcal Atomic # 8 Polarization: -60.78 SS G_CDS: -1.19 Total: -61.96 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -77.77 -1.36 -79.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692137902.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.729 kcal (2) G-P(sol) polarization free energy of solvation -77.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds