Wall clock time and date at job start Fri Apr 10 2020 18:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 110.45942 * 2 1 4 4 C 1.54377 * 110.40559 * 237.59145 * 2 1 3 5 5 H 1.09003 * 110.32987 * 336.36817 * 4 2 1 6 6 N 1.46503 * 110.32311 * 98.47559 * 4 2 1 7 7 C 1.34781 * 119.99645 * 204.99936 * 6 4 2 8 8 O 1.21277 * 120.00178 * 359.97438 * 7 6 4 9 9 C 1.50699 * 119.99654 * 179.97438 * 7 6 4 10 10 H 1.09000 * 110.33158 * 57.24857 * 9 7 6 11 11 C 1.54478 * 110.37477 * 294.99886 * 9 7 6 12 12 C 1.54512 * 104.06239 * 217.19252 * 11 9 7 13 13 C 1.54475 * 104.06488 * 359.97438 * 12 11 9 14 14 O 1.44423 * 104.80285 * 23.97738 * 13 12 11 15 15 C 1.54260 * 105.05805 * 217.36522 * 4 2 1 16 16 C 1.54374 * 105.06160 * 0.02562 * 15 4 2 17 17 N 1.48552 * 110.41103 * 122.42205 * 2 1 3 18 18 C 1.46904 * 110.99726 * 277.81362 * 17 2 1 19 19 C 1.50700 * 109.47124 * 170.00358 * 18 17 2 20 20 O 1.21292 * 119.99931 * 359.97438 * 19 18 17 21 21 N 1.34774 * 119.99956 * 180.02562 * 19 18 17 22 22 C 1.37104 * 119.99857 * 179.97438 * 21 19 18 23 23 H 1.07995 * 120.00058 * 0.27796 * 22 21 19 24 24 C 1.38955 * 119.99721 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00276 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99625 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46986 * 90.00449 * 26 24 22 28 28 H 1.48496 * 109.47029 * 210.00465 * 26 24 22 29 29 H 1.48499 * 109.47352 * 330.00295 * 26 24 22 30 30 H 1.09008 * 109.46778 * 299.03469 * 1 2 3 31 31 H 1.09000 * 109.47148 * 59.03295 * 1 2 3 32 32 H 1.09000 * 109.47300 * 179.03831 * 1 2 3 33 33 H 0.96993 * 120.00254 * 24.99420 * 6 4 2 34 34 H 1.09001 * 110.50798 * 335.83537 * 11 9 7 35 35 H 1.08994 * 110.51351 * 98.54801 * 11 9 7 36 36 H 1.09002 * 110.51384 * 118.64414 * 12 11 9 37 37 H 1.09003 * 110.50988 * 241.21247 * 12 11 9 38 38 H 1.08999 * 110.37588 * 142.81081 * 13 12 11 39 39 H 1.09003 * 110.37144 * 265.14615 * 13 12 11 40 40 H 1.08998 * 110.32085 * 118.89803 * 15 4 2 41 41 H 1.09000 * 110.32730 * 241.10449 * 15 4 2 42 42 H 1.09000 * 110.41081 * 265.07460 * 16 15 4 43 43 H 1.09000 * 110.41286 * 142.62874 * 16 15 4 44 44 H 1.08997 * 109.47232 * 49.99958 * 18 17 2 45 45 H 1.09002 * 109.47005 * 290.00457 * 18 17 2 46 46 H 0.96999 * 120.00050 * 0.02562 * 21 19 18 47 47 H 0.97000 * 119.99719 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0683 -0.7755 -1.2215 5 1 1.3227 -1.4866 -1.5772 6 7 2.4355 0.1540 -2.2928 7 6 2.4422 -0.2636 -3.5743 8 8 2.1448 -1.4088 -3.8405 9 6 2.8194 0.6926 -4.6763 10 1 3.8145 1.1007 -4.4995 11 6 1.7813 1.8320 -4.7784 12 6 1.6650 2.0991 -6.2958 13 6 2.6470 1.0899 -6.9310 14 8 2.7669 0.0294 -5.9580 15 6 3.3177 -1.5188 -0.7056 16 6 3.4288 -1.1304 0.7843 17 7 2.0481 -0.7465 1.1752 18 6 2.0570 0.1011 2.3751 19 6 2.3505 -0.7460 3.5864 20 8 2.5337 -1.9386 3.4624 21 7 2.4083 -0.1786 4.8075 22 6 2.6748 -0.9494 5.9096 23 1 2.8428 -2.0105 5.7987 24 6 2.7349 -0.3644 7.1685 25 7 2.5358 0.9276 7.3029 26 14 3.0987 -1.4145 8.6700 27 1 4.5655 -1.4636 8.8960 28 1 2.4340 -0.8244 9.8596 29 1 2.5857 -2.7903 8.4480 30 1 -0.3633 0.4988 0.8986 31 1 -0.3633 0.5288 -0.8812 32 1 -0.3634 -1.0275 -0.0172 33 1 2.6737 1.0698 -2.0799 34 1 0.8217 1.5119 -4.3723 35 1 2.1387 2.7219 -4.2603 36 1 0.6479 1.9110 -6.6399 37 1 1.9625 3.1218 -6.5275 38 1 2.2417 0.7030 -7.8659 39 1 3.6158 1.5594 -7.1019 40 1 3.1860 -2.5960 -0.8069 41 1 4.2041 -1.1922 -1.2495 42 1 4.1069 -0.2860 0.9075 43 1 3.7687 -1.9813 1.3747 44 1 1.0830 0.5764 2.4914 45 1 2.8253 0.8675 2.2728 46 1 2.2606 0.7749 4.9068 47 1 2.5774 1.3359 8.1818 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692137903.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:49 Heat of formation + Delta-G solvation = -107.478716 kcal Electronic energy + Delta-G solvation = -27855.678212 eV Core-core repulsion = 23845.478513 eV Total energy + Delta-G solvation = -4010.199699 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.73227 -39.59548 -38.45167 -37.51905 -34.59229 -33.83182 -32.60328 -31.52143 -31.28218 -31.04772 -29.70048 -26.50701 -25.47063 -24.17144 -23.92020 -22.03507 -21.42052 -20.56328 -20.24591 -19.14067 -17.90353 -17.81354 -16.97854 -16.67941 -15.97010 -15.78389 -15.53175 -15.05886 -14.86812 -14.59477 -14.38253 -14.15186 -14.09072 -13.82537 -13.72663 -13.37273 -13.18518 -12.49639 -12.30336 -12.22321 -12.21356 -11.88826 -11.84396 -11.69715 -11.49907 -11.38059 -11.26044 -11.24472 -11.12105 -10.82588 -10.63159 -10.41174 -10.38737 -10.21096 -9.84908 -9.48858 -9.23822 -8.54612 -8.04551 -7.94398 -6.41110 -3.81634 2.34881 2.57998 3.18211 3.26817 3.33035 3.60508 3.90799 3.96231 4.04955 4.21206 4.28893 4.36755 4.41833 4.57011 4.65148 4.70147 4.84619 4.99021 5.06448 5.16185 5.19349 5.23217 5.25831 5.30559 5.34194 5.40804 5.44108 5.50854 5.61462 5.66567 5.76919 5.86674 5.88559 5.96874 6.12695 6.21099 6.22192 6.30406 6.36899 6.40895 7.08574 7.14814 7.25152 7.56001 7.98571 8.07159 8.62930 9.19350 9.55439 10.07707 10.76763 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.035638 B = 0.002085 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.487059 B =13428.265123 C =13713.780972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.052 3.948 3 H 0.053 0.947 4 C 0.147 3.853 5 H 0.103 0.897 6 N -0.720 5.720 7 C 0.519 3.481 8 O -0.515 6.515 9 C 0.057 3.943 10 H 0.095 0.905 11 C -0.146 4.146 12 C -0.154 4.154 13 C 0.041 3.959 14 O -0.344 6.344 15 C -0.133 4.133 16 C 0.038 3.962 17 N -0.476 5.476 18 C 0.035 3.965 19 C 0.446 3.554 20 O -0.575 6.575 21 N -0.566 5.566 22 C -0.297 4.297 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.398 0.602 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.038 0.962 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.050 0.950 46 H 0.391 0.609 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.601 9.151 -24.460 26.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.057 4.057 3 H 0.071 0.929 4 C 0.042 3.958 5 H 0.121 0.879 6 N -0.374 5.374 7 C 0.303 3.697 8 O -0.389 6.389 9 C -0.005 4.005 10 H 0.113 0.887 11 C -0.184 4.184 12 C -0.192 4.192 13 C -0.036 4.036 14 O -0.262 6.262 15 C -0.172 4.172 16 C -0.089 4.089 17 N -0.200 5.200 18 C -0.096 4.096 19 C 0.231 3.769 20 O -0.458 6.458 21 N -0.204 5.204 22 C -0.426 4.426 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.545 5.545 26 Si 0.757 3.243 27 H -0.205 1.205 28 H -0.210 1.210 29 H -0.194 1.194 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.233 0.767 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.117 0.883 44 H 0.107 0.893 45 H 0.068 0.932 46 H 0.224 0.776 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.029 6.896 -24.473 25.447 hybrid contribution 0.772 1.751 0.946 2.135 sum -0.257 8.647 -23.527 25.067 Atomic orbital electron populations 1.21715 0.93167 1.03075 1.01387 1.22866 0.96803 0.95627 0.90417 0.92867 1.21795 0.97365 0.91118 0.85534 0.87880 1.46042 1.70452 1.15091 1.05793 1.20161 0.77793 0.88548 0.83183 1.90752 1.46243 1.19000 1.82888 1.22874 1.00067 0.91790 0.85740 0.88745 1.22933 0.99979 0.97877 0.97583 1.22946 1.01306 1.00344 0.94578 1.23509 0.98559 0.88274 0.93266 1.89293 1.94737 1.28494 1.13678 1.22752 0.97243 1.01665 0.95552 1.23157 0.89483 1.01401 0.94900 1.65083 1.18854 1.35491 1.00596 1.22071 1.01871 0.94523 0.91169 1.19674 0.84583 0.88732 0.83916 1.90521 1.54425 1.15313 1.85549 1.41856 1.62470 1.10849 1.05191 1.19694 1.44704 0.94056 0.84189 0.87933 1.25252 0.97541 0.96075 0.99157 1.69610 1.50076 1.09850 1.24952 0.85863 0.78432 0.79786 0.80250 1.20472 1.20954 1.19403 0.92102 0.92578 0.91331 0.76736 0.89938 0.89441 0.90249 0.90034 0.88531 0.91880 0.90123 0.91153 0.94341 0.88293 0.89271 0.93207 0.77577 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.34 37.16 0.35 -1.18 16 2 C 0.05 0.63 2.58 -66.07 -0.17 0.45 16 3 H 0.05 0.55 7.61 -51.93 -0.39 0.15 16 4 C 0.15 1.74 2.96 -66.55 -0.20 1.55 16 5 H 0.10 1.42 7.26 -51.93 -0.38 1.05 16 6 N -0.72 -6.68 5.01 -52.46 -0.26 -6.94 16 7 C 0.52 5.91 7.08 -10.98 -0.08 5.83 16 8 O -0.52 -8.41 16.20 -13.65 -0.22 -8.63 16 9 C 0.06 0.48 3.71 -27.11 -0.10 0.37 16 10 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 11 C -0.15 -0.82 6.61 -25.16 -0.17 -0.99 16 12 C -0.15 -0.75 7.09 -25.16 -0.18 -0.93 16 13 C 0.04 0.26 7.63 37.93 0.29 0.55 16 14 O -0.34 -3.76 10.91 -54.44 -0.59 -4.35 16 15 C -0.13 -1.74 6.79 -25.35 -0.17 -1.91 16 16 C 0.04 0.59 5.92 -2.20 -0.01 0.58 16 17 N -0.48 -7.66 4.66 -223.59 -1.04 -8.70 16 18 C 0.04 0.61 5.27 -4.97 -0.03 0.59 16 19 C 0.45 10.42 7.63 -10.99 -0.08 10.34 16 20 O -0.57 -15.51 14.80 5.55 0.08 -15.43 16 21 N -0.57 -14.23 5.29 -10.96 -0.06 -14.29 16 22 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 23 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 24 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 26 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 30 H 0.06 0.69 7.31 -51.92 -0.38 0.31 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 33 H 0.40 2.50 8.38 -40.82 -0.34 2.16 16 34 H 0.08 0.54 7.86 -51.93 -0.41 0.13 16 35 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.07 0.84 7.95 -51.93 -0.41 0.42 16 42 H 0.04 0.55 7.75 -51.93 -0.40 0.15 16 43 H 0.10 1.83 7.24 -51.93 -0.38 1.45 16 44 H 0.09 1.39 7.18 -51.93 -0.37 1.02 16 45 H 0.05 0.77 7.77 -51.93 -0.40 0.37 16 46 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 47 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 381.48 15.07 5.75 5.75 Total: -1.00 -34.95 381.48 -8.94 -43.89 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -7.51 Total: 9.06 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -0.79 Total: 7.32 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.64 Total: -53.65 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.73 Total: -28.41 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.95 -8.94 -43.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692137903.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.589 kcal (2) G-P(sol) polarization free energy of solvation -34.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds