Wall clock time and date at job start Fri Apr 10 2020 18:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 110.45942 * 2 1 4 4 C 1.54377 * 110.40559 * 237.59145 * 2 1 3 5 5 H 1.09003 * 110.32987 * 336.36817 * 4 2 1 6 6 N 1.46503 * 110.32311 * 98.47559 * 4 2 1 7 7 C 1.34781 * 119.99645 * 204.99936 * 6 4 2 8 8 O 1.21277 * 120.00178 * 359.97438 * 7 6 4 9 9 C 1.50699 * 119.99654 * 179.97438 * 7 6 4 10 10 H 1.09000 * 110.33158 * 57.24857 * 9 7 6 11 11 C 1.54478 * 110.37477 * 294.99886 * 9 7 6 12 12 C 1.54512 * 104.06239 * 217.19252 * 11 9 7 13 13 C 1.54475 * 104.06488 * 359.97438 * 12 11 9 14 14 O 1.44423 * 104.80285 * 23.97738 * 13 12 11 15 15 C 1.54260 * 105.05805 * 217.36522 * 4 2 1 16 16 C 1.54374 * 105.06160 * 0.02562 * 15 4 2 17 17 N 1.48552 * 110.41103 * 122.42205 * 2 1 3 18 18 C 1.46904 * 110.99726 * 277.81362 * 17 2 1 19 19 C 1.50700 * 109.47124 * 170.00358 * 18 17 2 20 20 O 1.21292 * 119.99931 * 359.97438 * 19 18 17 21 21 N 1.34774 * 119.99956 * 180.02562 * 19 18 17 22 22 C 1.37104 * 119.99857 * 179.97438 * 21 19 18 23 23 H 1.07995 * 120.00058 * 0.27796 * 22 21 19 24 24 C 1.38955 * 119.99721 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00276 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99625 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46986 * 90.00449 * 26 24 22 28 28 H 1.48496 * 109.47029 * 210.00465 * 26 24 22 29 29 H 1.48499 * 109.47352 * 330.00295 * 26 24 22 30 30 H 1.09008 * 109.46778 * 299.03469 * 1 2 3 31 31 H 1.09000 * 109.47148 * 59.03295 * 1 2 3 32 32 H 1.09000 * 109.47300 * 179.03831 * 1 2 3 33 33 H 0.96993 * 120.00254 * 24.99420 * 6 4 2 34 34 H 1.09001 * 110.50798 * 335.83537 * 11 9 7 35 35 H 1.08994 * 110.51351 * 98.54801 * 11 9 7 36 36 H 1.09002 * 110.51384 * 118.64414 * 12 11 9 37 37 H 1.09003 * 110.50988 * 241.21247 * 12 11 9 38 38 H 1.08999 * 110.37588 * 142.81081 * 13 12 11 39 39 H 1.09003 * 110.37144 * 265.14615 * 13 12 11 40 40 H 1.08998 * 110.32085 * 118.89803 * 15 4 2 41 41 H 1.09000 * 110.32730 * 241.10449 * 15 4 2 42 42 H 1.09000 * 110.41081 * 265.07460 * 16 15 4 43 43 H 1.09000 * 110.41286 * 142.62874 * 16 15 4 44 44 H 1.08997 * 109.47232 * 49.99958 * 18 17 2 45 45 H 1.09002 * 109.47005 * 290.00457 * 18 17 2 46 46 H 0.96999 * 120.00050 * 0.02562 * 21 19 18 47 47 H 0.97000 * 119.99719 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0683 -0.7755 -1.2215 5 1 1.3227 -1.4866 -1.5772 6 7 2.4355 0.1540 -2.2928 7 6 2.4422 -0.2636 -3.5743 8 8 2.1448 -1.4088 -3.8405 9 6 2.8194 0.6926 -4.6763 10 1 3.8145 1.1007 -4.4995 11 6 1.7813 1.8320 -4.7784 12 6 1.6650 2.0991 -6.2958 13 6 2.6470 1.0899 -6.9310 14 8 2.7669 0.0294 -5.9580 15 6 3.3177 -1.5188 -0.7056 16 6 3.4288 -1.1304 0.7843 17 7 2.0481 -0.7465 1.1752 18 6 2.0570 0.1011 2.3751 19 6 2.3505 -0.7460 3.5864 20 8 2.5337 -1.9386 3.4624 21 7 2.4083 -0.1786 4.8075 22 6 2.6748 -0.9494 5.9096 23 1 2.8428 -2.0105 5.7987 24 6 2.7349 -0.3644 7.1685 25 7 2.5358 0.9276 7.3029 26 14 3.0987 -1.4145 8.6700 27 1 4.5655 -1.4636 8.8960 28 1 2.4340 -0.8244 9.8596 29 1 2.5857 -2.7903 8.4480 30 1 -0.3633 0.4988 0.8986 31 1 -0.3633 0.5288 -0.8812 32 1 -0.3634 -1.0275 -0.0172 33 1 2.6737 1.0698 -2.0799 34 1 0.8217 1.5119 -4.3723 35 1 2.1387 2.7219 -4.2603 36 1 0.6479 1.9110 -6.6399 37 1 1.9625 3.1218 -6.5275 38 1 2.2417 0.7030 -7.8659 39 1 3.6158 1.5594 -7.1019 40 1 3.1860 -2.5960 -0.8069 41 1 4.2041 -1.1922 -1.2495 42 1 4.1069 -0.2860 0.9075 43 1 3.7687 -1.9813 1.3747 44 1 1.0830 0.5764 2.4914 45 1 2.8253 0.8675 2.2728 46 1 2.2606 0.7749 4.9068 47 1 2.5774 1.3359 8.1818 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692137903.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:48 Heat of formation + Delta-G solvation = -134.911433 kcal Electronic energy + Delta-G solvation = -27856.867784 eV Core-core repulsion = 23845.478513 eV Total energy + Delta-G solvation = -4011.389271 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.58411 -40.66354 -39.71249 -38.86486 -36.01863 -35.46575 -33.34407 -33.13637 -32.43896 -32.19203 -30.42072 -28.05721 -26.46698 -25.86976 -24.62545 -22.65478 -22.32887 -21.57573 -21.31038 -20.78302 -19.85468 -18.61464 -17.86722 -17.56713 -17.40963 -16.65631 -16.54106 -16.41401 -16.13183 -15.95538 -15.67596 -15.34021 -15.18766 -14.92492 -14.65342 -14.45499 -14.37042 -13.87106 -13.69200 -13.45692 -13.00390 -12.89976 -12.83208 -12.73802 -12.68913 -12.45950 -12.40431 -12.38192 -12.23526 -12.12668 -12.06924 -11.71672 -11.65903 -11.47302 -11.04720 -10.66559 -10.33792 -10.15982 -9.98704 -9.37846 -8.45387 -5.93336 1.37981 1.41753 1.50077 1.54158 1.78957 2.08480 2.29550 2.79328 3.09660 3.21339 3.34158 3.41159 3.51146 3.69046 3.77821 3.94682 4.02363 4.09492 4.14899 4.22817 4.23971 4.33874 4.39132 4.42135 4.43730 4.54941 4.68877 4.70159 4.81035 4.82978 4.87448 4.95142 5.00435 5.02274 5.03809 5.11766 5.15517 5.35385 5.37245 5.42589 5.75196 5.85019 5.95366 6.10191 6.49112 6.63228 7.15458 7.18430 7.59286 8.16175 8.71984 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.035638 B = 0.002085 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.487059 B =13428.265123 C =13713.780972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.061 3.939 3 H 0.087 0.913 4 C 0.155 3.845 5 H 0.080 0.920 6 N -0.700 5.700 7 C 0.516 3.484 8 O -0.574 6.574 9 C 0.056 3.944 10 H 0.123 0.877 11 C -0.141 4.141 12 C -0.150 4.150 13 C 0.033 3.967 14 O -0.389 6.389 15 C -0.125 4.125 16 C 0.042 3.958 17 N -0.505 5.505 18 C 0.050 3.950 19 C 0.442 3.558 20 O -0.618 6.618 21 N -0.575 5.575 22 C -0.331 4.331 23 H 0.076 0.924 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.990 3.010 27 H -0.271 1.271 28 H -0.270 1.270 29 H -0.276 1.276 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.418 0.582 34 H 0.070 0.930 35 H 0.121 0.879 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.112 0.888 45 H 0.078 0.922 46 H 0.396 0.604 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.408 12.362 -25.243 28.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.048 4.048 3 H 0.105 0.895 4 C 0.049 3.951 5 H 0.099 0.901 6 N -0.354 5.354 7 C 0.303 3.697 8 O -0.452 6.452 9 C -0.004 4.004 10 H 0.140 0.860 11 C -0.179 4.179 12 C -0.187 4.187 13 C -0.043 4.043 14 O -0.308 6.308 15 C -0.165 4.165 16 C -0.086 4.086 17 N -0.230 5.230 18 C -0.081 4.081 19 C 0.229 3.771 20 O -0.503 6.503 21 N -0.213 5.213 22 C -0.460 4.460 23 H 0.094 0.906 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.814 3.186 27 H -0.197 1.197 28 H -0.195 1.195 29 H -0.201 1.201 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.257 0.743 34 H 0.089 0.911 35 H 0.139 0.861 36 H 0.093 0.907 37 H 0.126 0.874 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.130 0.870 45 H 0.096 0.904 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.834 10.187 -25.260 27.250 hybrid contribution 0.710 0.719 1.121 1.509 sum -0.124 10.906 -24.140 26.489 Atomic orbital electron populations 1.21727 0.92566 1.02220 1.02689 1.22895 0.97129 0.96596 0.88158 0.89523 1.21490 0.96086 0.91286 0.86206 0.90150 1.45794 1.69430 1.15543 1.04636 1.20864 0.76451 0.88272 0.84157 1.90730 1.49005 1.21682 1.83784 1.23063 1.02268 0.91302 0.83805 0.85968 1.22985 0.98628 0.97837 0.98410 1.22960 1.00716 1.01217 0.93853 1.23747 1.00065 0.87885 0.92643 1.89254 1.95075 1.31142 1.15321 1.22657 0.98604 1.00792 0.94408 1.23016 0.89701 1.00480 0.95392 1.64973 1.19353 1.36920 1.01737 1.21913 1.03844 0.93693 0.88699 1.20813 0.82409 0.88856 0.85034 1.90499 1.55751 1.17691 1.86397 1.41912 1.63105 1.10888 1.05405 1.19617 1.46986 0.93456 0.85980 0.90606 1.25987 0.96776 0.97320 1.01175 1.69661 1.49811 1.10666 1.25920 0.84967 0.78561 0.77895 0.77153 1.19670 1.19485 1.20056 0.91885 0.90058 0.93412 0.74345 0.91097 0.86084 0.90718 0.87445 0.88421 0.90090 0.92100 0.89607 0.92669 0.92430 0.86997 0.90440 0.76959 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.34 71.98 0.67 -2.07 16 2 C 0.06 1.30 2.58 45.07 0.12 1.42 16 3 H 0.09 1.35 7.61 -2.39 -0.02 1.33 16 4 C 0.16 3.52 2.96 45.89 0.14 3.66 16 5 H 0.08 2.26 7.26 -2.39 -0.02 2.24 16 6 N -0.70 -11.31 5.01 -438.29 -2.19 -13.50 16 7 C 0.52 11.16 7.08 87.66 0.62 11.78 16 8 O -0.57 -19.17 16.20 15.34 0.25 -18.92 16 9 C 0.06 0.82 3.71 30.35 0.11 0.93 16 10 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 11 C -0.14 -1.11 6.61 31.61 0.21 -0.90 16 12 C -0.15 -1.02 7.09 31.61 0.22 -0.80 16 13 C 0.03 0.36 7.63 72.48 0.55 0.91 16 14 O -0.39 -8.17 10.91 -130.62 -1.43 -9.60 16 15 C -0.13 -3.27 6.79 31.49 0.21 -3.06 16 16 C 0.04 1.29 5.92 86.45 0.51 1.80 16 17 N -0.50 -15.80 4.66 -861.31 -4.01 -19.81 16 18 C 0.05 1.64 5.27 85.56 0.45 2.09 16 19 C 0.44 20.88 7.63 87.66 0.67 21.55 16 20 O -0.62 -34.62 14.80 -3.07 -0.05 -34.67 16 21 N -0.58 -29.24 5.29 -306.98 -1.62 -30.86 16 22 C -0.33 -18.81 9.68 84.04 0.81 -17.99 16 23 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 24 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 25 N -0.92 -49.16 13.05 21.66 0.28 -48.88 16 26 Si 0.99 43.12 29.55 68.60 2.03 45.14 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 28 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 29 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 30 H 0.06 1.27 7.31 -2.38 -0.02 1.25 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 1.17 8.12 -2.39 -0.02 1.15 16 33 H 0.42 3.49 8.38 -92.71 -0.78 2.72 16 34 H 0.07 0.74 7.86 -2.39 -0.02 0.72 16 35 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.09 1.95 7.95 -2.39 -0.02 1.93 16 42 H 0.06 1.49 7.75 -2.39 -0.02 1.47 16 43 H 0.06 2.24 7.24 -2.39 -0.02 2.22 16 44 H 0.11 3.19 7.18 -2.39 -0.02 3.18 16 45 H 0.08 2.15 7.77 -2.39 -0.02 2.13 16 46 H 0.40 18.92 7.90 -92.71 -0.73 18.19 16 47 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -80.43 381.48 -1.49 -81.92 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: -0.52 Total: 30.09 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: 5.77 Total: 19.09 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -7.55 Total: -113.05 kcal Atomic # 8 Polarization: -61.97 SS G_CDS: -1.22 Total: -63.19 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -80.43 -1.49 -81.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692137903.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.994 kcal (2) G-P(sol) polarization free energy of solvation -80.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds