Wall clock time and date at job start Fri Apr 10 2020 18:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.80598 * 2 1 4 4 C 1.54994 * 110.90995 * 236.33525 * 2 1 3 5 5 O 1.44570 * 103.58554 * 204.85877 * 4 2 1 6 6 C 1.43745 * 106.87401 * 39.87808 * 5 4 2 7 7 H 1.08995 * 109.87882 * 93.16607 * 6 5 4 8 8 C 1.50701 * 109.88133 * 214.17353 * 6 5 4 9 9 O 1.21280 * 119.99781 * 3.28674 * 8 6 5 10 10 N 1.34771 * 119.99622 * 183.29350 * 8 6 5 11 11 C 1.46505 * 119.99622 * 179.97438 * 10 8 6 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 C 1.53935 * 113.73611 * 273.76591 * 12 11 10 14 14 N 1.48181 * 86.10469 * 221.95628 * 13 12 11 15 15 C 1.46898 * 111.07347 * 137.51624 * 14 13 12 16 16 C 1.50709 * 109.46620 * 90.56854 * 15 14 13 17 17 O 1.21285 * 120.00390 * 359.97438 * 16 15 14 18 18 N 1.34781 * 119.99396 * 180.02562 * 16 15 14 19 19 C 1.37098 * 119.99594 * 179.97438 * 18 16 15 20 20 H 1.08007 * 119.99955 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99988 * 179.97438 * 19 18 16 22 22 N 1.31410 * 119.99934 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99943 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47432 * 90.00486 * 23 21 19 25 25 H 1.48501 * 109.46894 * 210.00559 * 23 21 19 26 26 H 1.48504 * 109.47072 * 330.00082 * 23 21 19 27 27 C 1.47961 * 90.79696 * 24.59739 * 14 13 12 28 28 C 1.54105 * 107.41650 * 333.67038 * 6 5 4 29 29 H 1.08999 * 109.47318 * 296.37640 * 1 2 3 30 30 H 1.09007 * 109.46932 * 56.36901 * 1 2 3 31 31 H 1.08998 * 109.47295 * 176.36492 * 1 2 3 32 32 H 1.08997 * 110.61911 * 323.27989 * 4 2 1 33 33 H 1.09000 * 110.61753 * 86.11910 * 4 2 1 34 34 H 0.96996 * 120.00772 * 359.97438 * 10 8 6 35 35 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 36 36 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 37 37 H 1.09006 * 112.93811 * 45.32824 * 12 11 10 38 38 H 1.08998 * 113.75751 * 336.23999 * 13 12 11 39 39 H 1.09005 * 113.76340 * 107.59763 * 13 12 11 40 40 H 1.08998 * 109.47328 * 210.56725 * 15 14 13 41 41 H 1.08998 * 109.47372 * 330.57367 * 15 14 13 42 42 H 0.96993 * 120.00484 * 359.97438 * 18 16 15 43 43 H 0.96993 * 119.99901 * 179.97438 * 22 21 19 44 44 H 1.09007 * 113.75937 * 221.08136 * 27 14 13 45 45 H 1.08996 * 113.85796 * 89.73718 * 27 14 13 46 46 H 1.09007 * 110.48362 * 120.63064 * 28 6 5 47 47 H 1.08998 * 110.48881 * 243.27431 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0190 0.0000 4 6 2.0832 -0.8026 -1.2051 5 8 3.3954 -1.2179 -0.7629 6 6 3.2718 -1.5880 0.6206 7 1 3.0837 -2.6585 0.7025 8 6 4.5349 -1.2317 1.3613 9 8 5.4343 -0.6572 0.7850 10 7 4.6652 -1.5517 2.6640 11 6 5.8933 -1.2058 3.3839 12 6 5.7835 -1.6768 4.8354 13 6 5.0947 -0.6620 5.7657 14 7 6.1460 -1.0053 6.7520 15 6 6.6533 0.1985 7.4239 16 6 5.8437 0.4580 8.6683 17 8 4.9335 -0.2863 8.9658 18 7 6.1306 1.5178 9.4499 19 6 5.3938 1.7542 10.5817 20 1 4.5837 1.0909 10.8471 21 6 5.6898 2.8465 11.3879 22 7 6.6757 3.6533 11.0653 23 14 4.6864 3.1682 12.9303 24 1 5.3083 2.4653 14.0811 25 1 4.6508 4.6276 13.2022 26 1 3.3022 2.6674 12.7337 27 6 7.0562 -1.4293 5.6652 28 6 2.0824 -0.8008 1.2042 29 1 -0.3634 0.4565 0.9207 30 1 -0.3633 0.5692 -0.8557 31 1 -0.3634 -1.0256 -0.0652 32 1 1.4563 -1.6708 -1.4083 33 1 2.1557 -0.1679 -2.0882 34 1 3.9458 -2.0109 3.1250 35 1 6.7436 -1.6931 2.9068 36 1 6.0350 -0.1253 3.3627 37 1 5.3917 -2.6901 4.9248 38 1 5.1465 0.3665 5.4087 39 1 4.0909 -0.9573 6.0714 40 1 7.6986 0.0502 7.6948 41 1 6.5698 1.0523 6.7515 42 1 6.8582 2.1133 9.2118 43 1 6.8821 4.4159 11.6278 44 1 7.6169 -2.3365 5.8907 45 1 7.6839 -0.6269 5.2777 46 1 1.3246 -1.4838 1.5881 47 1 2.4208 -0.1246 1.9892 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692320792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:52 Heat of formation + Delta-G solvation = -84.340609 kcal Electronic energy + Delta-G solvation = -27077.036302 eV Core-core repulsion = 23067.839947 eV Total energy + Delta-G solvation = -4009.196355 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.78043 -40.04644 -38.68923 -37.71616 -35.01311 -33.99067 -33.86790 -31.64883 -31.17777 -30.21005 -27.36966 -26.74983 -26.08444 -24.98235 -23.89595 -22.44350 -21.19445 -20.75391 -19.64641 -19.20502 -18.01106 -17.73245 -16.76650 -16.49641 -16.23092 -15.90097 -15.52472 -15.19971 -15.13670 -14.78379 -14.57812 -14.33838 -14.25718 -13.87069 -13.62828 -13.36316 -13.28241 -12.93378 -12.67995 -12.60455 -12.28012 -12.10619 -11.80532 -11.62032 -11.47134 -11.36346 -11.27446 -11.23041 -11.06079 -10.71925 -10.68181 -10.44934 -10.39194 -10.20508 -9.74467 -9.49242 -9.32896 -8.73387 -8.17247 -7.95087 -6.40684 -3.81462 2.34149 2.61406 3.18027 3.26349 3.32038 3.57706 3.87754 3.93678 3.95515 4.19636 4.23372 4.28991 4.35056 4.46297 4.57173 4.70260 4.80151 4.95767 4.97098 5.04850 5.08905 5.19366 5.20709 5.23909 5.28780 5.32484 5.37597 5.48614 5.51307 5.52012 5.60118 5.67666 5.70694 5.73621 5.75684 5.91887 6.06242 6.22350 6.28296 6.32765 6.56735 7.15072 7.21655 7.55844 7.96063 8.07129 8.63391 9.19470 9.56037 10.08433 10.77251 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.016412 B = 0.002058 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.694734 B =13603.319258 C =14692.814897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 H 0.089 0.911 4 C 0.048 3.952 5 O -0.348 6.348 6 C 0.061 3.939 7 H 0.095 0.905 8 C 0.511 3.489 9 O -0.521 6.521 10 N -0.725 5.725 11 C 0.129 3.871 12 C -0.131 4.131 13 C 0.016 3.984 14 N -0.449 5.449 15 C 0.010 3.990 16 C 0.446 3.554 17 O -0.576 6.576 18 N -0.567 5.567 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.009 3.991 28 C -0.145 4.145 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.403 0.597 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.058 0.942 42 H 0.391 0.609 43 H 0.271 0.729 44 H 0.092 0.908 45 H 0.071 0.929 46 H 0.089 0.911 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.595 -9.252 -22.670 25.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 H 0.107 0.893 4 C -0.029 4.029 5 O -0.265 6.265 6 C -0.001 4.001 7 H 0.112 0.888 8 C 0.296 3.704 9 O -0.396 6.396 10 N -0.379 5.379 11 C 0.005 3.995 12 C -0.150 4.150 13 C -0.113 4.113 14 N -0.171 5.171 15 C -0.122 4.122 16 C 0.232 3.768 17 O -0.460 6.460 18 N -0.205 5.205 19 C -0.427 4.427 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.195 1.195 27 C -0.121 4.121 28 C -0.183 4.183 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.237 0.763 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.124 0.876 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.076 0.924 42 H 0.224 0.776 43 H 0.081 0.919 44 H 0.110 0.890 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.417 -9.588 -22.357 25.432 hybrid contribution -0.196 1.111 0.532 1.247 sum -7.613 -8.477 -21.825 24.620 Atomic orbital electron populations 1.21732 0.93390 1.02299 1.02592 1.22740 0.96882 1.00574 0.94300 0.89288 1.23769 0.83838 0.97758 0.97515 1.89053 1.29252 1.86201 1.22023 1.22613 0.93268 1.00121 0.84064 0.88763 1.20470 0.88677 0.79249 0.82020 1.90734 1.41399 1.40119 1.67320 1.45916 1.20253 1.61354 1.10393 1.21453 0.86665 1.00711 0.90627 1.23289 0.98584 1.01159 0.91949 1.24076 0.98697 0.97437 0.91122 1.68410 1.05135 1.26821 1.16746 1.22484 0.99963 0.92733 0.97069 1.19692 0.87454 0.83740 0.85957 1.90512 1.33050 1.48459 1.73953 1.41885 1.31854 1.24239 1.22498 1.19690 1.13484 1.10029 0.99544 0.87986 1.25258 0.97163 0.95923 0.99703 1.69610 1.29305 1.16013 1.39520 0.85861 0.79958 0.77316 0.81164 1.20405 1.20952 1.19458 1.23946 0.94999 1.01686 0.91437 1.23050 0.96525 0.99599 0.99126 0.91846 0.92061 0.92198 0.91688 0.88514 0.76314 0.90996 0.91190 0.87573 0.91305 0.89052 0.89379 0.92436 0.77553 0.91908 0.88992 0.91072 0.89198 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 9.19 37.16 0.34 -0.30 16 2 C -0.13 -0.79 3.73 -88.61 -0.33 -1.12 16 3 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 4 C 0.05 0.33 7.18 38.21 0.27 0.61 16 5 O -0.35 -3.79 10.75 -54.80 -0.59 -4.38 16 6 C 0.06 0.52 3.84 -27.31 -0.10 0.41 16 7 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 8 C 0.51 5.70 6.95 -10.99 -0.08 5.63 16 9 O -0.52 -8.31 16.53 -14.01 -0.23 -8.54 16 10 N -0.73 -6.27 5.53 -60.29 -0.33 -6.61 16 11 C 0.13 1.24 5.51 -4.04 -0.02 1.22 16 12 C -0.13 -1.29 3.93 -89.69 -0.35 -1.65 16 13 C 0.02 0.21 7.53 -2.64 -0.02 0.19 16 14 N -0.45 -7.17 5.65 -239.52 -1.35 -8.53 16 15 C 0.01 0.17 5.28 -4.97 -0.03 0.14 16 16 C 0.45 10.67 7.83 -10.98 -0.09 10.59 16 17 O -0.58 -15.89 16.01 5.55 0.09 -15.80 16 18 N -0.57 -14.53 5.29 -10.96 -0.06 -14.59 16 19 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 20 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 21 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.73 13.05 55.50 0.72 -24.00 16 23 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 27 C 0.01 0.10 7.51 -2.76 -0.02 0.08 16 28 C -0.15 -0.91 6.20 -25.20 -0.16 -1.07 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.22 8.09 -51.93 -0.42 -0.20 16 32 H 0.06 0.34 8.01 -51.93 -0.42 -0.07 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.40 2.43 8.47 -40.82 -0.35 2.08 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.76 7.87 -51.93 -0.41 0.35 16 37 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.90 7.26 -51.93 -0.38 0.52 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 41 H 0.06 0.91 7.39 -51.93 -0.38 0.53 16 42 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.09 0.97 8.14 -51.92 -0.42 0.54 16 45 H 0.07 0.73 7.88 -51.93 -0.41 0.33 16 46 H 0.09 0.38 7.86 -51.93 -0.41 -0.03 16 47 H 0.08 0.60 7.69 -51.93 -0.40 0.20 16 LS Contribution 388.78 15.07 5.86 5.86 Total: -1.00 -36.16 388.78 -9.36 -45.52 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -7.63 Total: 8.27 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -0.82 Total: 6.68 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -1.02 Total: -53.73 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.73 Total: -28.72 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.16 -9.36 -45.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692320792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.820 kcal (2) G-P(sol) polarization free energy of solvation -36.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds