Wall clock time and date at job start Fri Apr 10 2020 18:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.80598 * 2 1 4 4 C 1.54994 * 110.90995 * 236.33525 * 2 1 3 5 5 O 1.44570 * 103.58554 * 204.85877 * 4 2 1 6 6 C 1.43745 * 106.87401 * 39.87808 * 5 4 2 7 7 H 1.08995 * 109.87882 * 93.16607 * 6 5 4 8 8 C 1.50701 * 109.88133 * 214.17353 * 6 5 4 9 9 O 1.21280 * 119.99781 * 3.28674 * 8 6 5 10 10 N 1.34771 * 119.99622 * 183.29350 * 8 6 5 11 11 C 1.46505 * 119.99622 * 179.97438 * 10 8 6 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 C 1.53935 * 113.73611 * 273.76591 * 12 11 10 14 14 N 1.48181 * 86.10469 * 221.95628 * 13 12 11 15 15 C 1.46898 * 111.07347 * 137.51624 * 14 13 12 16 16 C 1.50709 * 109.46620 * 90.56854 * 15 14 13 17 17 O 1.21285 * 120.00390 * 359.97438 * 16 15 14 18 18 N 1.34781 * 119.99396 * 180.02562 * 16 15 14 19 19 C 1.37098 * 119.99594 * 179.97438 * 18 16 15 20 20 H 1.08007 * 119.99955 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99988 * 179.97438 * 19 18 16 22 22 N 1.31410 * 119.99934 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99943 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47432 * 90.00486 * 23 21 19 25 25 H 1.48501 * 109.46894 * 210.00559 * 23 21 19 26 26 H 1.48504 * 109.47072 * 330.00082 * 23 21 19 27 27 C 1.47961 * 90.79696 * 24.59739 * 14 13 12 28 28 C 1.54105 * 107.41650 * 333.67038 * 6 5 4 29 29 H 1.08999 * 109.47318 * 296.37640 * 1 2 3 30 30 H 1.09007 * 109.46932 * 56.36901 * 1 2 3 31 31 H 1.08998 * 109.47295 * 176.36492 * 1 2 3 32 32 H 1.08997 * 110.61911 * 323.27989 * 4 2 1 33 33 H 1.09000 * 110.61753 * 86.11910 * 4 2 1 34 34 H 0.96996 * 120.00772 * 359.97438 * 10 8 6 35 35 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 36 36 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 37 37 H 1.09006 * 112.93811 * 45.32824 * 12 11 10 38 38 H 1.08998 * 113.75751 * 336.23999 * 13 12 11 39 39 H 1.09005 * 113.76340 * 107.59763 * 13 12 11 40 40 H 1.08998 * 109.47328 * 210.56725 * 15 14 13 41 41 H 1.08998 * 109.47372 * 330.57367 * 15 14 13 42 42 H 0.96993 * 120.00484 * 359.97438 * 18 16 15 43 43 H 0.96993 * 119.99901 * 179.97438 * 22 21 19 44 44 H 1.09007 * 113.75937 * 221.08136 * 27 14 13 45 45 H 1.08996 * 113.85796 * 89.73718 * 27 14 13 46 46 H 1.09007 * 110.48362 * 120.63064 * 28 6 5 47 47 H 1.08998 * 110.48881 * 243.27431 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0190 0.0000 4 6 2.0832 -0.8026 -1.2051 5 8 3.3954 -1.2179 -0.7629 6 6 3.2718 -1.5880 0.6206 7 1 3.0837 -2.6585 0.7025 8 6 4.5349 -1.2317 1.3613 9 8 5.4343 -0.6572 0.7850 10 7 4.6652 -1.5517 2.6640 11 6 5.8933 -1.2058 3.3839 12 6 5.7835 -1.6768 4.8354 13 6 5.0947 -0.6620 5.7657 14 7 6.1460 -1.0053 6.7520 15 6 6.6533 0.1985 7.4239 16 6 5.8437 0.4580 8.6683 17 8 4.9335 -0.2863 8.9658 18 7 6.1306 1.5178 9.4499 19 6 5.3938 1.7542 10.5817 20 1 4.5837 1.0909 10.8471 21 6 5.6898 2.8465 11.3879 22 7 6.6757 3.6533 11.0653 23 14 4.6864 3.1682 12.9303 24 1 5.3083 2.4653 14.0811 25 1 4.6508 4.6276 13.2022 26 1 3.3022 2.6674 12.7337 27 6 7.0562 -1.4293 5.6652 28 6 2.0824 -0.8008 1.2042 29 1 -0.3634 0.4565 0.9207 30 1 -0.3633 0.5692 -0.8557 31 1 -0.3634 -1.0256 -0.0652 32 1 1.4563 -1.6708 -1.4083 33 1 2.1557 -0.1679 -2.0882 34 1 3.9458 -2.0109 3.1250 35 1 6.7436 -1.6931 2.9068 36 1 6.0350 -0.1253 3.3627 37 1 5.3917 -2.6901 4.9248 38 1 5.1465 0.3665 5.4087 39 1 4.0909 -0.9573 6.0714 40 1 7.6986 0.0502 7.6948 41 1 6.5698 1.0523 6.7515 42 1 6.8582 2.1133 9.2118 43 1 6.8821 4.4159 11.6278 44 1 7.6169 -2.3365 5.8907 45 1 7.6839 -0.6269 5.2777 46 1 1.3246 -1.4838 1.5881 47 1 2.4208 -0.1246 1.9892 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692320792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:52 Heat of formation + Delta-G solvation = -113.164616 kcal Electronic energy + Delta-G solvation = -27078.286205 eV Core-core repulsion = 23067.839947 eV Total energy + Delta-G solvation = -4010.446258 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59251 -41.08221 -39.73018 -39.30736 -36.05327 -35.80324 -34.53431 -33.32205 -32.49454 -31.13368 -28.53804 -27.23236 -27.09138 -26.67113 -24.78154 -23.55355 -21.81385 -21.44524 -21.01660 -20.53849 -19.89765 -18.65132 -17.81217 -17.56981 -17.15317 -16.86647 -16.61249 -16.46798 -16.32826 -15.96089 -15.86036 -15.48742 -15.24004 -14.96050 -14.74826 -14.51172 -14.29512 -13.79927 -13.70123 -13.61984 -13.49883 -13.11596 -12.98515 -12.73124 -12.66906 -12.43776 -12.34611 -12.29906 -12.12986 -11.85604 -11.73347 -11.70442 -11.66987 -11.50101 -11.12536 -10.53442 -10.37406 -10.16089 -10.01720 -9.63466 -8.47118 -5.96033 1.37384 1.40685 1.51033 1.53631 1.88809 2.05505 2.28125 2.78013 2.98389 3.19068 3.30713 3.42260 3.46362 3.65684 3.72883 3.80702 3.86864 4.17023 4.18497 4.21449 4.27284 4.30790 4.38014 4.47879 4.52053 4.52249 4.61032 4.65697 4.70568 4.75997 4.79126 4.83154 4.87395 4.88629 5.07872 5.20755 5.21642 5.34608 5.38868 5.39878 5.44593 5.75158 5.90060 6.08773 6.49354 6.60229 7.12545 7.17535 7.56253 8.12465 8.70409 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.016412 B = 0.002058 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.694734 B =13603.319258 C =14692.814897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 H 0.071 0.929 4 C 0.044 3.956 5 O -0.385 6.385 6 C 0.061 3.939 7 H 0.124 0.876 8 C 0.507 3.493 9 O -0.577 6.577 10 N -0.711 5.711 11 C 0.135 3.865 12 C -0.101 4.101 13 C 0.009 3.991 14 N -0.484 5.484 15 C 0.023 3.977 16 C 0.442 3.558 17 O -0.618 6.618 18 N -0.577 5.577 19 C -0.333 4.333 20 H 0.078 0.922 21 C -0.015 4.015 22 N -0.922 5.922 23 Si 0.994 3.006 24 H -0.271 1.271 25 H -0.270 1.270 26 H -0.272 1.272 27 C 0.013 3.987 28 C -0.140 4.140 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.418 0.582 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.122 0.878 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.395 0.605 43 H 0.277 0.723 44 H 0.105 0.895 45 H 0.086 0.914 46 H 0.118 0.882 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.319 -10.092 -23.066 26.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 H 0.089 0.911 4 C -0.032 4.032 5 O -0.304 6.304 6 C 0.000 4.000 7 H 0.141 0.859 8 C 0.293 3.707 9 O -0.456 6.456 10 N -0.364 5.364 11 C 0.011 3.989 12 C -0.120 4.120 13 C -0.120 4.120 14 N -0.206 5.206 15 C -0.109 4.109 16 C 0.229 3.771 17 O -0.503 6.503 18 N -0.215 5.215 19 C -0.462 4.462 20 H 0.096 0.904 21 C -0.215 4.215 22 N -0.563 5.563 23 Si 0.817 3.183 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.116 4.116 28 C -0.178 4.178 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.255 0.745 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.140 0.860 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.124 0.876 41 H 0.095 0.905 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.123 0.877 45 H 0.104 0.896 46 H 0.137 0.863 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.147 -10.442 -22.747 26.322 hybrid contribution 0.034 1.346 0.626 1.485 sum -8.113 -9.096 -22.121 25.257 Atomic orbital electron populations 1.21703 0.91742 1.03258 1.02786 1.22722 0.98140 0.99527 0.94138 0.91085 1.23967 0.82775 0.98748 0.97730 1.89013 1.31552 1.86607 1.23252 1.22799 0.92280 1.01897 0.83062 0.85902 1.21075 0.88993 0.78182 0.82402 1.90704 1.43474 1.42845 1.68594 1.45807 1.20374 1.60477 1.09789 1.21327 0.87195 1.00013 0.90382 1.23064 0.96984 1.00798 0.91136 1.24118 0.97817 0.98501 0.91520 1.68376 1.07273 1.26067 1.18924 1.22357 0.99493 0.94589 0.94469 1.20818 0.87020 0.82199 0.87019 1.90473 1.34984 1.49570 1.75322 1.41977 1.31972 1.25077 1.22492 1.19653 1.14212 1.10858 1.01488 0.90392 1.26060 0.98026 0.95134 1.02238 1.69672 1.29923 1.16184 1.40506 0.84921 0.78210 0.77740 0.77426 1.19631 1.19518 1.19704 1.24063 0.95262 1.02536 0.89723 1.23087 0.96293 0.99741 0.98688 0.91905 0.91633 0.90846 0.89526 0.88355 0.74516 0.90707 0.92414 0.86037 0.91280 0.90407 0.87555 0.90506 0.77105 0.91326 0.87652 0.89628 0.86333 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.19 71.98 0.66 -0.30 16 2 C -0.13 -1.45 3.73 -9.49 -0.04 -1.48 16 3 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 4 C 0.04 0.56 7.18 72.66 0.52 1.08 16 5 O -0.39 -8.23 10.75 -130.27 -1.40 -9.63 16 6 C 0.06 0.94 3.84 30.22 0.12 1.06 16 7 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 8 C 0.51 11.00 6.95 87.66 0.61 11.61 16 9 O -0.58 -18.73 16.53 15.68 0.26 -18.47 16 10 N -0.71 -11.21 5.53 -463.06 -2.56 -13.77 16 11 C 0.13 2.38 5.51 86.38 0.48 2.86 16 12 C -0.10 -1.78 3.93 -10.15 -0.04 -1.82 16 13 C 0.01 0.24 7.53 86.37 0.65 0.89 16 14 N -0.48 -14.84 5.65 -911.71 -5.15 -19.99 16 15 C 0.02 0.78 5.28 85.56 0.45 1.23 16 16 C 0.44 21.41 7.83 87.66 0.69 22.09 16 17 O -0.62 -34.87 16.01 -3.04 -0.05 -34.91 16 18 N -0.58 -30.11 5.29 -306.97 -1.62 -31.73 16 19 C -0.33 -19.11 9.68 84.04 0.81 -18.30 16 20 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 21 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 22 N -0.92 -50.22 13.05 21.66 0.28 -49.94 16 23 Si 0.99 43.19 29.55 68.60 2.03 45.22 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 27 C 0.01 0.26 7.51 86.41 0.65 0.91 16 28 C -0.14 -1.52 6.20 31.59 0.20 -1.33 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.07 0.33 8.09 -2.39 -0.02 0.31 16 32 H 0.09 0.71 8.01 -2.39 -0.02 0.69 16 33 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.42 4.07 8.47 -92.71 -0.79 3.29 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 1.20 7.87 -2.39 -0.02 1.19 16 37 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.07 1.76 7.26 -2.39 -0.02 1.74 16 39 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 40 H 0.11 3.25 8.08 -2.39 -0.02 3.23 16 41 H 0.08 2.34 7.39 -2.39 -0.02 2.32 16 42 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 43 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 44 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 45 H 0.09 1.53 7.88 -2.39 -0.02 1.51 16 46 H 0.12 0.61 7.86 -2.38 -0.02 0.59 16 47 H 0.07 0.98 7.69 -2.39 -0.02 0.96 16 Total: -1.00 -80.71 388.78 -2.52 -83.23 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: -0.53 Total: 31.86 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 6.22 Total: 18.15 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -9.05 Total: -115.44 kcal Atomic # 8 Polarization: -61.83 SS G_CDS: -1.19 Total: -63.02 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -80.71 -2.52 -83.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692320792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.936 kcal (2) G-P(sol) polarization free energy of solvation -80.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds