Wall clock time and date at job start Fri Apr 10 2020 18:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 110.45471 * 2 1 4 4 C 1.54477 * 110.63025 * 237.31543 * 2 1 3 5 5 O 1.44688 * 104.83958 * 265.27651 * 4 2 1 6 6 C 1.44428 * 105.13885 * 319.51776 * 5 4 2 7 7 H 1.09002 * 110.37130 * 281.60836 * 6 5 4 8 8 C 1.50699 * 110.37357 * 159.38249 * 6 5 4 9 9 O 1.21281 * 119.99936 * 357.94958 * 8 6 5 10 10 N 1.34775 * 119.99969 * 177.94837 * 8 6 5 11 11 C 1.46498 * 119.99872 * 179.97438 * 10 8 6 12 12 C 1.52999 * 109.46963 * 180.02562 * 11 10 8 13 13 C 1.53937 * 113.73495 * 273.76743 * 12 11 10 14 14 N 1.48189 * 86.10315 * 221.95688 * 13 12 11 15 15 C 1.46901 * 111.07099 * 137.51797 * 14 13 12 16 16 C 1.50703 * 109.46769 * 70.56912 * 15 14 13 17 17 O 1.21289 * 120.00137 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99395 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99541 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00412 * 359.97438 * 19 18 16 21 21 C 1.38952 * 119.99876 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00174 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 120.00122 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46671 * 59.99627 * 23 21 19 25 25 H 1.48497 * 109.47221 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46867 * 300.00103 * 23 21 19 27 27 C 1.47964 * 90.79878 * 24.59805 * 14 13 12 28 28 C 1.54483 * 104.89902 * 40.49479 * 6 5 4 29 29 H 1.08995 * 109.46907 * 297.39638 * 1 2 3 30 30 H 1.08992 * 109.47231 * 57.39950 * 1 2 3 31 31 H 1.09002 * 109.46713 * 177.39552 * 1 2 3 32 32 H 1.08996 * 110.37125 * 24.10512 * 4 2 1 33 33 H 1.08999 * 110.37544 * 146.33202 * 4 2 1 34 34 H 0.97001 * 120.00077 * 0.02562 * 10 8 6 35 35 H 1.09004 * 109.47511 * 300.00268 * 11 10 8 36 36 H 1.08999 * 109.47168 * 60.00649 * 11 10 8 37 37 H 1.09003 * 112.94372 * 45.33482 * 12 11 10 38 38 H 1.09005 * 113.76006 * 336.23692 * 13 12 11 39 39 H 1.08996 * 113.75979 * 107.60319 * 13 12 11 40 40 H 1.09000 * 109.47002 * 190.56429 * 15 14 13 41 41 H 1.08994 * 109.47298 * 310.56862 * 15 14 13 42 42 H 0.96996 * 120.00455 * 0.02562 * 18 16 15 43 43 H 0.97002 * 119.99944 * 180.02562 * 22 21 19 44 44 H 1.08993 * 113.75876 * 221.08227 * 27 14 13 45 45 H 1.09004 * 113.85414 * 89.73150 * 27 14 13 46 46 H 1.09005 * 110.50990 * 94.61536 * 28 6 5 47 47 H 1.09004 * 110.50692 * 217.18375 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0743 -0.7807 -1.2168 5 8 2.3127 -2.1192 -0.7218 6 6 2.8788 -1.9393 0.5947 7 1 3.9328 -1.6714 0.5211 8 6 2.7133 -3.1940 1.4128 9 8 2.1319 -4.1504 0.9456 10 7 3.2114 -3.2533 2.6638 11 6 3.0501 -4.4729 3.4593 12 6 3.7007 -4.2772 4.8302 13 6 5.2049 -4.6036 4.8544 14 7 4.9375 -5.2644 6.1536 15 6 5.6539 -6.5430 6.2533 16 6 7.1314 -6.2813 6.3933 17 8 7.5468 -5.1418 6.4081 18 7 7.9912 -7.3135 6.5020 19 6 9.3353 -7.0754 6.6289 20 1 9.7053 -6.0609 6.6413 21 6 10.2218 -8.1396 6.7404 22 7 9.7719 -9.3742 6.7238 23 14 12.0533 -7.8153 6.9140 24 1 12.2999 -7.0129 8.1390 25 1 12.7775 -9.1078 7.0153 26 1 12.5383 -7.0674 5.7264 27 6 3.5224 -5.4774 5.7776 28 6 2.0714 -0.7797 1.2191 29 1 -0.3633 0.4729 0.9124 30 1 -0.3633 0.5536 -0.8657 31 1 -0.3633 -1.0266 -0.0467 32 1 1.3351 -0.7987 -2.0176 33 1 3.0039 -0.3339 -1.5694 34 1 3.6761 -2.4883 3.0376 35 1 1.9887 -4.6849 3.5882 36 1 3.5276 -5.3074 2.9459 37 1 3.4525 -3.3184 5.2854 38 1 5.5178 -5.2910 4.0684 39 1 5.8439 -3.7240 4.9311 40 1 5.2979 -7.0919 7.1251 41 1 5.4728 -7.1319 5.3542 42 1 7.6590 -8.2247 6.4898 43 1 10.3907 -10.1170 6.8021 44 1 2.8197 -5.2946 6.5905 45 1 3.3403 -6.4205 5.2622 46 1 1.2491 -1.1673 1.8205 47 1 2.7196 -0.1453 1.8238 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692320793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:56 Heat of formation + Delta-G solvation = -84.890875 kcal Electronic energy + Delta-G solvation = -27113.288219 eV Core-core repulsion = 23104.068002 eV Total energy + Delta-G solvation = -4009.220217 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.73731 -40.04505 -38.72862 -37.70122 -34.97225 -33.91552 -33.82100 -31.61047 -31.19181 -30.19435 -27.38185 -26.82060 -25.99634 -25.01333 -23.97621 -22.42120 -20.89956 -20.79660 -19.58848 -19.20220 -17.93469 -17.63723 -17.18581 -16.49232 -16.20925 -15.61237 -15.56903 -15.33390 -15.00898 -14.74111 -14.58650 -14.43323 -14.06169 -13.78213 -13.65178 -13.27343 -13.18020 -12.91255 -12.85798 -12.51713 -12.17359 -12.08632 -11.74449 -11.68166 -11.49883 -11.37451 -11.32795 -11.25792 -11.05334 -10.66503 -10.61767 -10.44837 -10.29917 -10.21622 -9.83435 -9.50269 -9.29851 -8.66840 -8.24035 -7.97199 -6.42195 -3.83205 2.35627 2.62792 3.19337 3.25178 3.29346 3.63816 3.87900 3.95571 3.98309 4.18686 4.22629 4.33074 4.41272 4.54199 4.61319 4.62705 4.79245 4.92961 4.99795 5.08073 5.09734 5.20659 5.22353 5.25294 5.34017 5.39119 5.40228 5.49613 5.52679 5.53875 5.59223 5.72689 5.74401 5.76843 5.82839 6.02066 6.12921 6.25343 6.27179 6.32421 6.60241 7.17734 7.24123 7.54120 7.98069 8.04613 8.60549 9.16985 9.53343 10.04938 10.75434 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.021213 B = 0.001954 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.654620 B =14323.926564 C =14901.685298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 H 0.088 0.912 4 C 0.044 3.956 5 O -0.343 6.343 6 C 0.056 3.944 7 H 0.096 0.904 8 C 0.517 3.483 9 O -0.521 6.521 10 N -0.724 5.724 11 C 0.129 3.871 12 C -0.134 4.134 13 C 0.026 3.974 14 N -0.454 5.454 15 C 0.010 3.990 16 C 0.443 3.557 17 O -0.581 6.581 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.009 3.991 28 C -0.142 4.142 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.403 0.597 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.054 0.946 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.091 0.909 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.287 16.200 -10.980 26.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 H 0.106 0.894 4 C -0.033 4.033 5 O -0.261 6.261 6 C -0.005 4.005 7 H 0.114 0.886 8 C 0.302 3.698 9 O -0.395 6.395 10 N -0.377 5.377 11 C 0.006 3.994 12 C -0.153 4.153 13 C -0.103 4.103 14 N -0.176 5.176 15 C -0.122 4.122 16 C 0.229 3.771 17 O -0.465 6.465 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.121 4.121 28 C -0.180 4.180 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.082 0.918 34 H 0.237 0.763 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.086 0.914 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.072 0.928 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.109 0.891 45 H 0.089 0.911 46 H 0.101 0.899 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.186 16.161 -10.788 26.614 hybrid contribution 0.977 -0.559 -0.283 1.160 sum -17.209 15.602 -11.071 25.732 Atomic orbital electron populations 1.21845 0.93758 1.02615 1.02013 1.22523 0.97379 1.00025 0.94455 0.89374 1.23639 1.00405 0.82640 0.96624 1.89345 1.82964 1.25576 1.28196 1.22868 0.99193 0.93320 0.85117 0.88623 1.20188 0.78966 0.88866 0.81795 1.90740 1.40815 1.37479 1.70498 1.45883 1.59081 1.18038 1.14720 1.21455 1.01054 0.86853 0.90054 1.23347 0.97132 1.00669 0.94169 1.23905 0.94486 1.00630 0.91248 1.68439 1.01245 1.17300 1.30609 1.22461 0.95339 0.92511 1.01898 1.19681 0.86774 0.86053 0.84627 1.90509 1.78670 1.21675 1.55617 1.41868 1.06778 1.07617 1.63792 1.19642 0.81328 0.94875 1.47105 0.88002 1.25269 1.00699 0.94646 0.97335 1.69604 1.36192 0.98211 1.50270 0.85914 0.81818 0.77382 0.79076 1.19889 1.20959 1.19926 1.23954 0.93486 0.96915 0.97739 1.23036 1.00563 0.95933 0.98451 0.92251 0.92261 0.91940 0.88531 0.91777 0.76289 0.91087 0.91121 0.87686 0.91425 0.88777 0.89122 0.92785 0.77482 0.91804 0.89089 0.91083 0.89893 0.89354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 8.95 37.16 0.33 -0.46 16 2 C -0.13 -0.69 3.71 -89.05 -0.33 -1.02 16 3 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 4 C 0.04 0.30 7.19 37.93 0.27 0.58 16 5 O -0.34 -3.87 10.93 -54.44 -0.60 -4.46 16 6 C 0.06 0.50 3.70 -27.11 -0.10 0.40 16 7 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 8 C 0.52 6.01 7.07 -10.99 -0.08 5.94 16 9 O -0.52 -8.53 16.55 -13.65 -0.23 -8.75 16 10 N -0.72 -6.64 5.55 -60.30 -0.33 -6.98 16 11 C 0.13 1.31 5.51 -4.04 -0.02 1.29 16 12 C -0.13 -1.39 3.93 -89.68 -0.35 -1.74 16 13 C 0.03 0.38 6.33 -2.63 -0.02 0.36 16 14 N -0.45 -7.28 5.95 -239.49 -1.42 -8.71 16 15 C 0.01 0.18 5.31 -4.97 -0.03 0.15 16 16 C 0.44 10.51 7.59 -10.98 -0.08 10.42 16 17 O -0.58 -15.65 15.13 5.55 0.08 -15.57 16 18 N -0.56 -14.39 5.29 -10.96 -0.06 -14.44 16 19 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 23 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 C 0.01 0.10 7.54 -2.76 -0.02 0.08 16 28 C -0.14 -0.86 6.26 -25.16 -0.16 -1.02 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 0.58 7.87 -51.93 -0.41 0.17 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.40 2.64 8.47 -40.82 -0.35 2.29 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.83 7.88 -51.93 -0.41 0.42 16 37 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.02 7.57 -51.93 -0.39 0.63 16 39 H 0.09 1.49 8.09 -51.93 -0.42 1.07 16 40 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.05 0.87 7.70 -51.93 -0.40 0.47 16 42 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 43 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.07 0.76 7.75 -51.93 -0.40 0.35 16 46 H 0.08 0.56 7.46 -51.93 -0.39 0.18 16 47 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 387.34 15.07 5.84 5.84 Total: -1.00 -35.57 387.34 -9.49 -45.06 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -7.65 Total: 8.89 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -0.82 Total: 6.94 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -1.09 Total: -54.03 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.74 Total: -28.79 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.57 -9.49 -45.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692320793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.830 kcal (2) G-P(sol) polarization free energy of solvation -35.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds