Wall clock time and date at job start Fri Apr 10 2020 18:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 110.45471 * 2 1 4 4 C 1.54477 * 110.63025 * 237.31543 * 2 1 3 5 5 O 1.44688 * 104.83958 * 265.27651 * 4 2 1 6 6 C 1.44428 * 105.13885 * 319.51776 * 5 4 2 7 7 H 1.09002 * 110.37130 * 281.60836 * 6 5 4 8 8 C 1.50699 * 110.37357 * 159.38249 * 6 5 4 9 9 O 1.21281 * 119.99936 * 357.94958 * 8 6 5 10 10 N 1.34775 * 119.99969 * 177.94837 * 8 6 5 11 11 C 1.46498 * 119.99872 * 179.97438 * 10 8 6 12 12 C 1.52999 * 109.46963 * 180.02562 * 11 10 8 13 13 C 1.53937 * 113.73495 * 273.76743 * 12 11 10 14 14 N 1.48189 * 86.10315 * 221.95688 * 13 12 11 15 15 C 1.46901 * 111.07099 * 137.51797 * 14 13 12 16 16 C 1.50703 * 109.46769 * 70.56912 * 15 14 13 17 17 O 1.21289 * 120.00137 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99395 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99541 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00412 * 359.97438 * 19 18 16 21 21 C 1.38952 * 119.99876 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00174 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 120.00122 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46671 * 59.99627 * 23 21 19 25 25 H 1.48497 * 109.47221 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46867 * 300.00103 * 23 21 19 27 27 C 1.47964 * 90.79878 * 24.59805 * 14 13 12 28 28 C 1.54483 * 104.89902 * 40.49479 * 6 5 4 29 29 H 1.08995 * 109.46907 * 297.39638 * 1 2 3 30 30 H 1.08992 * 109.47231 * 57.39950 * 1 2 3 31 31 H 1.09002 * 109.46713 * 177.39552 * 1 2 3 32 32 H 1.08996 * 110.37125 * 24.10512 * 4 2 1 33 33 H 1.08999 * 110.37544 * 146.33202 * 4 2 1 34 34 H 0.97001 * 120.00077 * 0.02562 * 10 8 6 35 35 H 1.09004 * 109.47511 * 300.00268 * 11 10 8 36 36 H 1.08999 * 109.47168 * 60.00649 * 11 10 8 37 37 H 1.09003 * 112.94372 * 45.33482 * 12 11 10 38 38 H 1.09005 * 113.76006 * 336.23692 * 13 12 11 39 39 H 1.08996 * 113.75979 * 107.60319 * 13 12 11 40 40 H 1.09000 * 109.47002 * 190.56429 * 15 14 13 41 41 H 1.08994 * 109.47298 * 310.56862 * 15 14 13 42 42 H 0.96996 * 120.00455 * 0.02562 * 18 16 15 43 43 H 0.97002 * 119.99944 * 180.02562 * 22 21 19 44 44 H 1.08993 * 113.75876 * 221.08227 * 27 14 13 45 45 H 1.09004 * 113.85414 * 89.73150 * 27 14 13 46 46 H 1.09005 * 110.50990 * 94.61536 * 28 6 5 47 47 H 1.09004 * 110.50692 * 217.18375 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0743 -0.7807 -1.2168 5 8 2.3127 -2.1192 -0.7218 6 6 2.8788 -1.9393 0.5947 7 1 3.9328 -1.6714 0.5211 8 6 2.7133 -3.1940 1.4128 9 8 2.1319 -4.1504 0.9456 10 7 3.2114 -3.2533 2.6638 11 6 3.0501 -4.4729 3.4593 12 6 3.7007 -4.2772 4.8302 13 6 5.2049 -4.6036 4.8544 14 7 4.9375 -5.2644 6.1536 15 6 5.6539 -6.5430 6.2533 16 6 7.1314 -6.2813 6.3933 17 8 7.5468 -5.1418 6.4081 18 7 7.9912 -7.3135 6.5020 19 6 9.3353 -7.0754 6.6289 20 1 9.7053 -6.0609 6.6413 21 6 10.2218 -8.1396 6.7404 22 7 9.7719 -9.3742 6.7238 23 14 12.0533 -7.8153 6.9140 24 1 12.2999 -7.0129 8.1390 25 1 12.7775 -9.1078 7.0153 26 1 12.5383 -7.0674 5.7264 27 6 3.5224 -5.4774 5.7776 28 6 2.0714 -0.7797 1.2191 29 1 -0.3633 0.4729 0.9124 30 1 -0.3633 0.5536 -0.8657 31 1 -0.3633 -1.0266 -0.0467 32 1 1.3351 -0.7987 -2.0176 33 1 3.0039 -0.3339 -1.5694 34 1 3.6761 -2.4883 3.0376 35 1 1.9887 -4.6849 3.5882 36 1 3.5276 -5.3074 2.9459 37 1 3.4525 -3.3184 5.2854 38 1 5.5178 -5.2910 4.0684 39 1 5.8439 -3.7240 4.9311 40 1 5.2979 -7.0919 7.1251 41 1 5.4728 -7.1319 5.3542 42 1 7.6590 -8.2247 6.4898 43 1 10.3907 -10.1170 6.8021 44 1 2.8197 -5.2946 6.5905 45 1 3.3403 -6.4205 5.2622 46 1 1.2491 -1.1673 1.8205 47 1 2.7196 -0.1453 1.8238 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692320793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:55 Heat of formation + Delta-G solvation = -113.580295 kcal Electronic energy + Delta-G solvation = -27114.532286 eV Core-core repulsion = 23104.068002 eV Total energy + Delta-G solvation = -4010.464283 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.59150 -41.11111 -39.74432 -39.31243 -36.07485 -35.79632 -34.38840 -33.33945 -32.47847 -31.12048 -28.55811 -27.34918 -27.06798 -26.68732 -24.87745 -23.56984 -21.66256 -21.36736 -21.00753 -20.54119 -19.90068 -18.49357 -17.87264 -17.83176 -17.28506 -16.74244 -16.63173 -16.39765 -16.35436 -15.99324 -15.75672 -15.53681 -15.26018 -14.91443 -14.79096 -14.41165 -14.15776 -13.74154 -13.66451 -13.53814 -13.41898 -13.41193 -13.08132 -12.85919 -12.73659 -12.45618 -12.33100 -12.16037 -12.13978 -11.84077 -11.76463 -11.67500 -11.67024 -11.49616 -10.99476 -10.65264 -10.34157 -10.18264 -10.03353 -9.68270 -8.47872 -5.96963 1.38575 1.40321 1.48734 1.51517 1.86881 2.03234 2.27664 2.81795 3.03756 3.18512 3.25853 3.40616 3.49558 3.64831 3.71306 3.86173 3.99010 4.10771 4.17874 4.19852 4.27131 4.30130 4.40106 4.50025 4.51805 4.59591 4.62087 4.66996 4.69584 4.75873 4.82803 4.85180 4.89946 4.91141 5.07820 5.12258 5.21254 5.33324 5.36917 5.38904 5.43415 5.74202 5.89144 6.06958 6.47546 6.58247 7.10737 7.15608 7.54059 8.09385 8.69284 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.021213 B = 0.001954 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.654620 B =14323.926564 C =14901.685298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 H 0.114 0.886 4 C 0.036 3.964 5 O -0.385 6.385 6 C 0.054 3.946 7 H 0.117 0.883 8 C 0.513 3.487 9 O -0.577 6.577 10 N -0.709 5.709 11 C 0.134 3.866 12 C -0.102 4.102 13 C 0.018 3.982 14 N -0.481 5.481 15 C 0.022 3.978 16 C 0.440 3.560 17 O -0.617 6.617 18 N -0.575 5.575 19 C -0.334 4.334 20 H 0.079 0.921 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.271 1.271 25 H -0.270 1.270 26 H -0.271 1.271 27 C 0.014 3.986 28 C -0.136 4.136 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.418 0.582 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.126 0.874 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.395 0.605 43 H 0.278 0.722 44 H 0.112 0.888 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.835 17.634 -10.666 27.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.139 4.139 3 H 0.132 0.868 4 C -0.040 4.040 5 O -0.304 6.304 6 C -0.007 4.007 7 H 0.135 0.865 8 C 0.299 3.701 9 O -0.456 6.456 10 N -0.363 5.363 11 C 0.010 3.990 12 C -0.121 4.121 13 C -0.111 4.111 14 N -0.203 5.203 15 C -0.110 4.110 16 C 0.227 3.773 17 O -0.503 6.503 18 N -0.212 5.212 19 C -0.464 4.464 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.115 4.115 28 C -0.174 4.174 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.255 0.745 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.144 0.856 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.126 0.874 41 H 0.091 0.909 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.130 0.870 45 H 0.101 0.899 46 H 0.092 0.908 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.742 17.614 -10.451 27.763 hybrid contribution 1.108 -0.978 -0.392 1.529 sum -17.634 16.636 -10.843 26.558 Atomic orbital electron populations 1.21845 0.94076 1.01306 1.02976 1.22559 0.97103 1.00957 0.93301 0.86786 1.23870 1.01449 0.81315 0.97351 1.89306 1.83447 1.28270 1.29393 1.23046 1.00729 0.92607 0.84296 0.86545 1.20803 0.77885 0.89175 0.82209 1.90708 1.43529 1.39601 1.71775 1.45781 1.58228 1.18233 1.14059 1.21337 1.01150 0.86755 0.89717 1.23139 0.93553 1.01372 0.94077 1.23879 0.97080 0.99678 0.90487 1.68444 1.03664 1.16542 1.31690 1.22353 0.90999 0.94088 1.03522 1.20748 0.89100 0.85046 0.82375 1.90475 1.80055 1.23117 1.56682 1.41959 1.06461 1.08231 1.64581 1.19626 0.83020 0.94334 1.49382 0.90270 1.26069 1.04741 0.94250 0.96343 1.69669 1.37672 0.98739 1.50076 0.84977 0.76593 0.77746 0.78951 1.19645 1.19498 1.19663 1.24082 0.90915 0.97852 0.98627 1.23079 1.00414 0.95164 0.98740 0.91392 0.91209 0.94367 0.88376 0.90167 0.74488 0.90390 0.92871 0.85649 0.92609 0.90743 0.87360 0.90942 0.77090 0.91297 0.86963 0.89908 0.90846 0.86321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.95 71.98 0.64 -0.75 16 2 C -0.12 -1.05 3.71 -9.78 -0.04 -1.09 16 3 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 4 C 0.04 0.46 7.19 72.48 0.52 0.98 16 5 O -0.39 -8.68 10.93 -130.61 -1.43 -10.11 16 6 C 0.05 0.90 3.70 30.35 0.11 1.01 16 7 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 8 C 0.51 11.78 7.07 87.66 0.62 12.40 16 9 O -0.58 -19.46 16.55 15.33 0.25 -19.21 16 10 N -0.71 -12.11 5.55 -463.07 -2.57 -14.68 16 11 C 0.13 2.55 5.51 86.38 0.48 3.03 16 12 C -0.10 -1.90 3.93 -10.15 -0.04 -1.94 16 13 C 0.02 0.50 6.33 86.37 0.55 1.05 16 14 N -0.48 -14.80 5.95 -911.62 -5.42 -20.22 16 15 C 0.02 0.76 5.31 85.56 0.45 1.22 16 16 C 0.44 21.14 7.59 87.66 0.67 21.81 16 17 O -0.62 -34.11 15.13 -3.06 -0.05 -34.16 16 18 N -0.57 -29.91 5.29 -306.98 -1.62 -31.54 16 19 C -0.33 -19.14 9.68 84.04 0.81 -18.32 16 20 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 21 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 22 N -0.92 -50.17 13.05 21.66 0.28 -49.89 16 23 Si 0.99 43.16 29.55 68.60 2.03 45.19 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 27 C 0.01 0.28 7.54 86.41 0.65 0.93 16 28 C -0.14 -1.34 6.26 31.61 0.20 -1.14 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.10 1.13 7.87 -2.39 -0.02 1.11 16 33 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 34 H 0.42 4.57 8.47 -92.71 -0.79 3.79 16 35 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.05 1.23 7.88 -2.39 -0.02 1.21 16 37 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.06 1.70 7.57 -2.38 -0.02 1.69 16 39 H 0.07 2.39 8.09 -2.39 -0.02 2.37 16 40 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 41 H 0.07 2.24 7.70 -2.39 -0.02 2.22 16 42 H 0.40 19.60 7.90 -92.71 -0.73 18.87 16 43 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 44 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.08 1.53 7.75 -2.38 -0.02 1.51 16 46 H 0.07 0.88 7.46 -2.38 -0.02 0.86 16 47 H 0.12 0.45 8.14 -2.38 -0.02 0.43 16 Total: -1.00 -80.13 387.34 -2.96 -83.09 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: -0.53 Total: 32.65 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 6.09 Total: 18.88 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -9.33 Total: -116.33 kcal Atomic # 8 Polarization: -62.25 SS G_CDS: -1.22 Total: -63.47 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -80.13 -2.96 -83.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692320793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.490 kcal (2) G-P(sol) polarization free energy of solvation -80.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds