Wall clock time and date at job start Fri Apr 10 2020 18:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00240 * 2 1 4 4 H 1.09000 * 110.91416 * 26.09907 * 3 2 1 5 5 C 1.55152 * 111.00327 * 149.99942 * 3 2 1 6 6 C 1.54322 * 102.94260 * 153.57672 * 5 3 2 7 7 H 1.09003 * 109.88556 * 218.23078 * 6 5 3 8 8 C 1.50708 * 109.87960 * 97.22584 * 6 5 3 9 9 O 1.21281 * 119.99948 * 260.31916 * 8 6 5 10 10 N 1.34774 * 120.00145 * 80.31833 * 8 6 5 11 11 C 1.46961 * 120.59588 * 180.02562 * 10 8 6 12 12 C 1.53371 * 108.63571 * 124.74637 * 11 10 8 13 13 N 1.46967 * 108.63484 * 49.42764 * 12 11 10 14 14 C 1.36935 * 120.59668 * 124.74472 * 13 12 11 15 15 H 1.08000 * 120.00280 * 208.17050 * 14 13 12 16 16 C 1.38816 * 119.99783 * 28.17335 * 14 13 12 17 17 N 1.31617 * 120.00010 * 17.56969 * 16 14 13 18 18 Si 1.86799 * 120.00020 * 197.56613 * 16 14 13 19 19 H 1.48494 * 109.46914 * 60.00061 * 18 16 14 20 20 H 1.48500 * 109.47114 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47211 * 299.99815 * 18 16 14 22 22 C 1.46961 * 118.80883 * 304.77226 * 13 12 11 23 23 C 1.46969 * 120.59227 * 359.97234 * 10 8 6 24 24 N 1.47012 * 107.40371 * 337.73237 * 6 5 3 25 25 C 1.34775 * 125.65043 * 178.97541 * 24 6 5 26 26 C 1.50707 * 120.00058 * 179.97438 * 25 24 6 27 27 O 1.21281 * 120.00343 * 0.02562 * 25 24 6 28 28 C 1.47739 * 108.53218 * 359.06747 * 24 6 5 29 29 H 1.08997 * 109.47060 * 300.00113 * 1 2 3 30 30 H 1.08998 * 109.46766 * 60.00012 * 1 2 3 31 31 H 1.08999 * 109.47182 * 179.97438 * 1 2 3 32 32 H 1.09006 * 110.72135 * 35.21455 * 5 3 2 33 33 H 1.09001 * 110.87670 * 272.01417 * 5 3 2 34 34 H 1.09002 * 109.60639 * 5.00590 * 11 10 8 35 35 H 1.09002 * 109.75145 * 244.57667 * 11 10 8 36 36 H 1.09001 * 109.60995 * 169.16973 * 12 11 10 37 37 H 1.09001 * 109.61628 * 289.68117 * 12 11 10 38 38 H 0.96996 * 120.00331 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.61191 * 295.47685 * 22 13 12 40 40 H 1.08999 * 109.75081 * 175.05201 * 22 13 12 41 41 H 1.09001 * 109.61113 * 354.99870 * 23 10 8 42 42 H 1.08999 * 109.60779 * 115.50853 * 23 10 8 43 43 H 1.08996 * 109.47016 * 60.00197 * 26 25 24 44 44 H 1.08998 * 109.46879 * 180.02562 * 26 25 24 45 45 H 1.09000 * 109.47152 * 300.00268 * 26 25 24 46 46 H 1.09001 * 110.28753 * 265.16881 * 28 24 6 47 47 H 1.09002 * 110.38375 * 142.89212 * 28 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3333 2.0328 0.4479 5 6 3.3824 1.3032 0.7242 6 6 4.1234 2.4853 0.0646 7 1 5.1755 2.2345 -0.0705 8 6 3.9965 3.7149 0.9267 9 8 3.1747 4.5642 0.6545 10 7 4.7964 3.8707 2.0002 11 6 4.6836 5.0643 2.8501 12 6 4.4501 4.6148 4.2978 13 7 5.4505 3.5938 4.6397 14 6 6.2632 3.7521 5.7303 15 1 7.2440 3.3001 5.7431 16 6 5.8265 4.4936 6.8195 17 7 4.5444 4.7506 6.9692 18 14 7.0585 5.1267 8.0729 19 1 8.0352 6.0196 7.3994 20 1 6.3431 5.8835 9.1315 21 1 7.7763 3.9795 8.6845 22 6 5.5633 2.4003 3.7897 23 6 5.7964 2.8495 2.3423 24 7 3.4944 2.7242 -1.2426 25 6 3.8436 3.6875 -2.1180 26 6 3.1095 3.8176 -3.4278 27 8 4.7492 4.4492 -1.8523 28 6 2.4156 1.7329 -1.4327 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9119 0.3675 0.5444 33 1 3.2576 1.4746 1.7934 34 1 3.8434 5.6731 2.5161 35 1 5.6033 5.6464 2.7917 36 1 4.5550 5.4684 4.9674 37 1 3.4496 4.1928 4.3930 38 1 4.2391 5.2684 7.7305 39 1 4.6421 1.8207 3.8487 40 1 6.4020 1.7889 4.1227 41 1 5.6912 1.9957 1.6730 42 1 6.7971 3.2710 2.2471 43 1 2.0535 4.0070 -3.2351 44 1 3.5293 4.6457 -3.9988 45 1 3.2150 2.8939 -3.9967 46 1 2.7853 0.8749 -1.9943 47 1 1.5686 2.1874 -1.9468 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000446156477.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:27 Heat of formation + Delta-G solvation = -92.316730 kcal Electronic energy + Delta-G solvation = -29619.014667 eV Core-core repulsion = 25609.472441 eV Total energy + Delta-G solvation = -4009.542226 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.03530 -40.30839 -39.33016 -38.42015 -37.15281 -35.70896 -33.28165 -32.97125 -32.05310 -30.56706 -29.77700 -28.61194 -27.36275 -25.76590 -24.93603 -24.21521 -22.92089 -22.22414 -20.92812 -19.77878 -19.01139 -18.36620 -18.13167 -17.64256 -16.93819 -16.75658 -16.56235 -16.21848 -16.12949 -15.81366 -15.63566 -15.46596 -15.32092 -15.06458 -14.82161 -14.27034 -14.22012 -13.93388 -13.82079 -13.62939 -13.38099 -13.20625 -13.12138 -13.01396 -12.70240 -12.61450 -12.52658 -12.34157 -12.32699 -12.05585 -11.93052 -11.87968 -11.70779 -11.12028 -10.99685 -10.61932 -10.61158 -9.89196 -9.77624 -8.68618 -7.90066 -5.38058 1.38879 1.47486 1.50575 1.55764 1.57002 1.80223 2.07978 2.50205 2.70380 3.24792 3.26350 3.37791 3.39922 3.55664 3.80548 3.97498 4.03449 4.16695 4.19121 4.25893 4.32451 4.43490 4.44555 4.46929 4.57517 4.59151 4.59412 4.62412 4.71054 4.74261 4.76126 4.82139 4.85234 4.91909 4.97685 5.03098 5.11352 5.21510 5.39968 5.57775 5.64517 6.13218 6.33522 6.36394 6.45722 7.04014 7.07609 7.13813 7.77319 8.30680 9.15499 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.017273 B = 0.003505 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.649413 B = 7987.029796 C = 8901.157614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.378 6.378 3 C 0.079 3.921 4 H 0.067 0.933 5 C -0.114 4.114 6 C 0.123 3.877 7 H 0.113 0.887 8 C 0.502 3.498 9 O -0.582 6.582 10 N -0.600 5.600 11 C 0.103 3.897 12 C 0.175 3.825 13 N -0.608 5.608 14 C -0.266 4.266 15 H 0.076 0.924 16 C -0.048 4.048 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.280 1.280 20 H -0.297 1.297 21 H -0.272 1.272 22 C 0.129 3.871 23 C 0.095 3.905 24 N -0.603 5.603 25 C 0.519 3.481 26 C -0.156 4.156 27 O -0.593 6.593 28 C 0.088 3.912 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.130 0.870 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.069 0.931 37 H -0.004 1.004 38 H 0.251 0.749 39 H 0.024 0.976 40 H 0.083 0.917 41 H 0.114 0.886 42 H 0.069 0.931 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.122 0.878 46 H 0.111 0.889 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.424 -12.350 -20.504 24.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.296 6.296 3 C 0.020 3.980 4 H 0.085 0.915 5 C -0.152 4.152 6 C 0.015 3.985 7 H 0.130 0.870 8 C 0.290 3.710 9 O -0.462 6.462 10 N -0.332 5.332 11 C -0.022 4.022 12 C 0.048 3.952 13 N -0.331 5.331 14 C -0.395 4.395 15 H 0.093 0.907 16 C -0.244 4.244 17 N -0.581 5.581 18 Si 0.796 3.204 19 H -0.206 1.206 20 H -0.223 1.223 21 H -0.197 1.197 22 C 0.003 3.997 23 C -0.028 4.028 24 N -0.338 5.338 25 C 0.311 3.689 26 C -0.215 4.215 27 O -0.474 6.474 28 C -0.033 4.033 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.148 0.852 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.014 0.986 38 H 0.060 0.940 39 H 0.042 0.958 40 H 0.102 0.898 41 H 0.132 0.868 42 H 0.087 0.913 43 H 0.123 0.877 44 H 0.108 0.892 45 H 0.140 0.860 46 H 0.129 0.871 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.321 -11.558 -20.441 24.318 hybrid contribution 0.202 1.226 1.428 1.893 sum -6.120 -10.331 -19.013 22.488 Atomic orbital electron populations 1.23064 0.79183 1.04335 1.00884 1.87884 1.21555 1.25377 1.94816 1.23089 0.94392 0.85615 0.94909 0.91516 1.22738 0.95388 0.97179 0.99863 1.21561 1.00772 0.92137 0.84020 0.86970 1.21434 0.80069 0.88703 0.80833 1.90596 1.38159 1.45578 1.71834 1.48092 1.36500 1.22096 1.26519 1.22072 1.00855 0.87349 0.91882 1.20825 0.89967 0.93396 0.90969 1.44206 1.41402 1.18475 1.29036 1.19535 0.95739 1.30951 0.93309 0.90662 1.25822 0.96939 1.02622 0.98998 1.70166 1.14133 1.42895 1.30890 0.85329 0.78397 0.78375 0.78261 1.20597 1.22326 1.19709 1.21453 0.99906 0.88904 0.89392 1.22468 0.91202 0.91108 0.98058 1.48389 1.36314 1.33054 1.16018 1.21489 0.83186 0.77497 0.86718 1.21908 1.01719 1.06403 0.91476 1.90723 1.33893 1.43594 1.79142 1.23001 0.90236 0.92311 0.97800 0.94324 0.92186 0.87596 0.85217 0.90247 0.91337 0.92471 0.91305 0.98551 0.94040 0.95769 0.89841 0.86796 0.91274 0.87703 0.89181 0.85971 0.87101 0.87976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.85 113.37 1.23 1.48 16 2 O -0.38 -6.32 10.51 -148.98 -1.57 -7.89 16 3 C 0.08 1.47 3.54 31.98 0.11 1.59 16 4 H 0.07 1.49 7.83 -2.39 -0.02 1.47 16 5 C -0.11 -2.34 5.51 31.78 0.17 -2.16 16 6 C 0.12 3.23 2.35 44.60 0.11 3.34 16 7 H 0.11 2.70 6.83 -2.39 -0.02 2.68 16 8 C 0.50 18.61 6.06 87.66 0.53 19.14 16 9 O -0.58 -25.87 15.35 -3.03 -0.05 -25.92 16 10 N -0.60 -22.96 2.95 -818.08 -2.41 -25.37 16 11 C 0.10 4.55 6.59 86.42 0.57 5.12 16 12 C 0.18 8.82 5.52 86.41 0.48 9.30 16 13 N -0.61 -29.95 2.97 -698.29 -2.07 -32.02 16 14 C -0.27 -14.19 9.58 84.03 0.80 -13.38 16 15 H 0.08 3.83 7.89 -2.91 -0.02 3.80 16 16 C -0.05 -2.66 4.90 84.86 0.42 -2.24 16 17 N -0.94 -55.17 11.20 21.65 0.24 -54.93 16 18 Si 0.97 44.36 29.59 68.60 2.03 46.39 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 C 0.13 4.91 6.67 86.40 0.58 5.49 16 23 C 0.10 3.03 6.33 86.40 0.55 3.58 16 24 N -0.60 -14.30 2.80 -791.39 -2.22 -16.52 16 25 C 0.52 14.19 7.30 87.66 0.64 14.83 16 26 C -0.16 -2.35 9.34 71.24 0.67 -1.68 16 27 O -0.59 -23.01 16.70 -3.03 -0.05 -23.06 16 28 C 0.09 1.32 6.44 86.79 0.56 1.87 16 29 H 0.04 0.52 8.12 -2.39 -0.02 0.50 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.13 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.08 1.95 7.82 -2.39 -0.02 1.94 16 34 H 0.07 3.13 6.99 -2.39 -0.02 3.12 16 35 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.07 3.88 5.99 -2.39 -0.01 3.86 16 37 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 38 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 39 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 2.90 7.94 -2.39 -0.02 2.88 16 41 H 0.11 2.64 5.22 -2.39 -0.01 2.63 16 42 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.10 1.23 7.86 -2.39 -0.02 1.22 16 44 H 0.09 1.43 8.12 -2.39 -0.02 1.41 16 45 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.10 1.10 7.51 -2.39 -0.02 1.09 16 Total: -1.00 -80.53 374.08 2.28 -78.25 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.96 Total: 14.81 kcal Atomic # 6 Polarization: 38.85 SS G_CDS: 7.41 Total: 46.26 kcal Atomic # 7 Polarization: -122.38 SS G_CDS: -6.46 Total: -128.83 kcal Atomic # 8 Polarization: -55.21 SS G_CDS: -1.66 Total: -56.87 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -80.53 2.28 -78.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446156477.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.068 kcal (2) G-P(sol) polarization free energy of solvation -80.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds