Wall clock time and date at job start Fri Apr 10 2020 18:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47531 * 2 1 4 4 C 1.46312 * 119.91651 * 89.99780 * 3 2 1 5 5 C 1.52606 * 110.54358 * 142.46197 * 4 3 2 6 6 N 1.46328 * 110.54217 * 51.55337 * 5 4 3 7 7 C 1.46496 * 119.91339 * 142.47945 * 6 5 4 8 8 C 1.50703 * 109.47057 * 90.00667 * 7 6 5 9 9 O 1.21282 * 119.99935 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00362 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00487 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47650 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.46734 * 300.00343 * 12 11 10 14 14 C 1.53002 * 109.47008 * 59.99640 * 12 11 10 15 15 C 1.50692 * 109.47337 * 179.97438 * 12 11 10 16 16 H 1.08000 * 120.00350 * 1.34863 * 15 12 11 17 17 C 1.37876 * 120.00038 * 181.34295 * 15 12 11 18 18 N 1.31513 * 120.00235 * 193.97553 * 17 15 12 19 19 Si 1.86808 * 120.00013 * 13.98077 * 17 15 12 20 20 H 1.48498 * 109.47004 * 84.54516 * 19 17 15 21 21 H 1.48500 * 109.47099 * 204.54696 * 19 17 15 22 22 H 1.48500 * 109.46861 * 324.54570 * 19 17 15 23 23 C 1.34802 * 120.16390 * 322.76082 * 6 5 4 24 24 O 1.21345 * 120.46367 * 185.72615 * 23 6 5 25 25 C 1.34806 * 119.91644 * 269.98503 * 3 2 1 26 26 O 1.21348 * 120.46688 * 5.98816 * 25 3 2 27 27 H 1.09000 * 109.47362 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46733 * 300.00007 * 1 2 3 29 29 H 1.08998 * 109.47210 * 59.99776 * 1 2 3 30 30 H 1.09007 * 109.46733 * 239.99993 * 2 1 3 31 31 H 1.08998 * 109.47210 * 120.00224 * 2 1 3 32 32 H 1.09004 * 109.26628 * 22.18806 * 4 3 2 33 33 H 1.09002 * 109.26410 * 262.73374 * 4 3 2 34 34 H 1.09003 * 109.25914 * 291.28590 * 5 4 3 35 35 H 1.08993 * 109.26660 * 171.83621 * 5 4 3 36 36 H 1.08994 * 109.46974 * 210.00233 * 7 6 5 37 37 H 1.08996 * 109.47713 * 330.00691 * 7 6 5 38 38 H 0.97000 * 119.99873 * 0.02562 * 10 8 7 39 39 H 1.09006 * 109.46809 * 300.00433 * 11 10 8 40 40 H 1.08994 * 109.47077 * 59.99543 * 11 10 8 41 41 H 1.08992 * 109.47473 * 69.36590 * 13 12 11 42 42 H 1.08995 * 109.46664 * 189.36803 * 13 12 11 43 43 H 1.09003 * 109.46692 * 309.36249 * 13 12 11 44 44 H 1.08994 * 109.47113 * 60.00436 * 14 12 11 45 45 H 1.09004 * 109.46734 * 180.02562 * 14 12 11 46 46 H 1.09004 * 109.47031 * 300.00264 * 14 12 11 47 47 H 0.97004 * 119.99915 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2617 2.0692 1.2682 5 6 3.4990 2.9566 1.1672 6 7 3.4097 3.8311 -0.0026 7 6 3.9088 5.2063 0.0734 8 6 5.3610 5.2365 -0.3284 9 8 5.9237 4.2103 -0.6465 10 7 6.0344 6.4039 -0.3343 11 6 7.4462 6.4333 -0.7244 12 6 7.9676 7.8695 -0.6452 13 6 7.1584 8.7587 -1.5915 14 6 7.8236 8.3860 0.7878 15 6 9.4200 7.8995 -1.0458 16 1 9.9153 6.9892 -1.3496 17 6 10.1165 9.0892 -1.0247 18 7 11.2834 9.1788 -1.6246 19 14 9.4028 10.5738 -0.1436 20 1 9.7420 10.5028 1.3003 21 1 9.9724 11.8157 -0.7254 22 1 7.9267 10.5831 -0.3055 23 6 2.8641 3.3762 -1.1482 24 8 2.8802 4.0592 -2.1511 25 6 2.2429 2.0149 -1.1684 26 8 1.9420 1.4905 -2.2206 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.4125 1.3301 2.0551 33 1 1.3968 2.6849 1.5149 34 1 4.3857 2.3287 1.0798 35 1 3.5785 3.5666 2.0670 36 1 3.3322 5.8399 -0.6004 37 1 3.8067 5.5741 1.0944 38 1 5.5845 7.2246 -0.0796 39 1 8.0227 5.8000 -0.0500 40 1 7.5489 6.0649 -1.7451 41 1 6.1447 8.8707 -1.2069 42 1 7.6307 9.7385 -1.6620 43 1 7.1235 8.3002 -2.5798 44 1 8.4000 7.7525 1.4620 45 1 8.1946 9.4094 0.8441 46 1 6.7731 8.3642 1.0780 47 1 11.7732 10.0160 -1.6100 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457990989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:31 Heat of formation + Delta-G solvation = -72.774208 kcal Electronic energy + Delta-G solvation = -28406.104515 eV Core-core repulsion = 24397.409716 eV Total energy + Delta-G solvation = -4008.694799 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.42282 -39.62802 -38.50630 -37.55207 -36.69674 -35.16253 -33.38418 -32.20760 -31.51166 -29.77552 -28.80499 -26.43574 -26.00824 -25.07721 -24.44575 -24.25837 -22.38837 -20.42364 -19.27859 -18.65097 -18.46303 -17.45740 -17.36492 -16.48315 -16.15244 -16.03773 -15.47882 -15.25967 -14.95228 -14.85000 -14.51502 -14.39491 -14.34802 -13.77425 -13.47575 -13.33176 -13.12450 -12.94976 -12.89110 -12.63782 -12.45692 -12.36652 -12.24374 -12.07121 -11.96488 -11.58803 -11.44567 -11.28778 -10.47226 -10.36352 -10.19892 -10.09358 -10.03580 -9.83289 -9.36098 -9.18826 -8.94546 -8.70868 -8.60142 -8.47166 -6.16391 -4.13929 1.20413 2.10066 2.38472 2.83100 3.02589 3.21649 3.27977 3.36828 3.56137 3.79742 4.11226 4.33307 4.44937 4.49615 4.67063 4.78011 4.81183 4.89455 4.93944 4.97697 5.10461 5.13935 5.20859 5.36113 5.44208 5.66046 5.73298 5.77036 5.96322 6.01159 6.02643 6.31686 6.42749 6.49117 6.51422 6.61308 6.64907 6.72979 6.80229 6.93052 7.19029 7.22817 7.40436 7.69706 7.75992 7.85183 8.41409 8.50663 8.88954 9.47049 10.96666 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.033904 B = 0.002429 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.668151 B =11523.007121 C =11691.485322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.605 5.605 4 C 0.097 3.903 5 C 0.094 3.906 6 N -0.585 5.585 7 C 0.092 3.908 8 C 0.489 3.511 9 O -0.537 6.537 10 N -0.719 5.719 11 C 0.143 3.857 12 C 0.028 3.972 13 C -0.143 4.143 14 C -0.147 4.147 15 C -0.513 4.513 16 H 0.076 0.924 17 C 0.074 3.926 18 N -0.890 5.890 19 Si 0.886 3.114 20 H -0.286 1.286 21 H -0.305 1.305 22 H -0.249 1.249 23 C 0.516 3.484 24 O -0.480 6.480 25 C 0.518 3.482 26 O -0.486 6.486 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.397 0.603 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.022 0.978 42 H 0.056 0.944 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.042 0.958 46 H 0.029 0.971 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.618 -12.970 12.948 29.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.013 4.013 3 N -0.344 5.344 4 C -0.026 4.026 5 C -0.029 4.029 6 N -0.322 5.322 7 C -0.034 4.034 8 C 0.272 3.728 9 O -0.414 6.414 10 N -0.371 5.371 11 C 0.021 3.979 12 C 0.027 3.973 13 C -0.200 4.200 14 C -0.204 4.204 15 C -0.551 4.551 16 H 0.094 0.906 17 C -0.128 4.128 18 N -0.527 5.527 19 Si 0.719 3.281 20 H -0.214 1.214 21 H -0.234 1.234 22 H -0.175 1.175 23 C 0.297 3.703 24 O -0.350 6.350 25 C 0.300 3.700 26 O -0.356 6.356 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.231 0.769 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.041 0.959 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.060 0.940 46 H 0.048 0.952 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.188 -13.530 11.474 28.408 hybrid contribution -0.239 1.351 0.808 1.592 sum -22.427 -12.179 12.282 28.322 Atomic orbital electron populations 1.22140 0.95417 1.02571 1.02591 1.21600 0.94864 0.81070 1.03799 1.48145 1.65705 1.14829 1.05704 1.21920 0.97913 0.96657 0.86126 1.21947 0.98531 0.93570 0.88820 1.47537 1.59464 1.13101 1.12055 1.21506 0.93596 0.83641 1.04651 1.20899 0.88780 0.84383 0.78702 1.90705 1.69681 1.33123 1.47918 1.46270 1.13735 1.09010 1.68086 1.21516 0.77635 0.98854 0.99905 1.18725 0.96838 0.90080 0.91656 1.22301 0.96897 1.00975 0.99842 1.22356 0.98263 1.00415 0.99328 1.20705 0.92240 0.96304 1.45881 0.90584 1.24989 0.94860 0.98392 0.94581 1.69953 1.14811 1.26868 1.41043 0.87281 0.79731 0.81775 0.79332 1.21383 1.23389 1.17496 1.20244 0.79522 0.87209 0.83280 1.90814 1.55634 1.56480 1.32088 1.20281 0.79411 0.86231 0.84111 1.90784 1.48594 1.65577 1.30666 0.91254 0.92402 0.92000 0.89552 0.89766 0.87576 0.90468 0.89863 0.87574 0.86736 0.86882 0.76868 0.91986 0.91883 0.95900 0.92513 0.93340 0.92813 0.94023 0.95196 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 10.24 37.16 0.38 -0.56 16 2 C 0.11 0.67 6.12 -4.04 -0.02 0.65 16 3 N -0.61 -4.91 2.81 -174.49 -0.49 -5.40 16 4 C 0.10 0.40 6.60 -4.35 -0.03 0.38 16 5 C 0.09 0.58 6.60 -4.34 -0.03 0.55 16 6 N -0.58 -6.21 2.30 -175.87 -0.40 -6.62 16 7 C 0.09 0.94 5.89 -5.19 -0.03 0.91 16 8 C 0.49 7.45 7.90 -10.99 -0.09 7.36 16 9 O -0.54 -10.56 16.43 5.56 0.09 -10.47 16 10 N -0.72 -11.07 5.00 -60.30 -0.30 -11.37 16 11 C 0.14 2.82 4.49 -4.04 -0.02 2.80 16 12 C 0.03 0.60 0.50 -155.66 -0.08 0.52 16 13 C -0.14 -2.89 7.53 37.16 0.28 -2.61 16 14 C -0.15 -2.83 7.52 37.16 0.28 -2.55 16 15 C -0.51 -13.70 8.62 -34.44 -0.30 -14.00 16 16 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 17 C 0.07 2.06 5.32 -17.82 -0.09 1.96 16 18 N -0.89 -26.57 13.96 55.43 0.77 -25.79 16 19 Si 0.89 20.81 22.79 -169.99 -3.87 16.94 16 20 H -0.29 -6.65 7.10 56.52 0.40 -6.25 16 21 H -0.31 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.25 -5.28 4.65 56.52 0.26 -5.02 16 23 C 0.52 7.42 7.60 -11.48 -0.09 7.33 16 24 O -0.48 -8.92 16.67 -9.98 -0.17 -9.09 16 25 C 0.52 6.81 7.60 -11.48 -0.09 6.72 16 26 O -0.49 -8.12 16.67 -9.98 -0.17 -8.29 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.26 8.14 -51.92 -0.42 -0.17 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.69 7.52 -51.92 -0.39 0.30 16 31 H 0.08 0.27 7.83 -51.93 -0.41 -0.13 16 32 H 0.11 0.12 7.79 -51.93 -0.40 -0.29 16 33 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.11 0.30 7.79 -51.93 -0.40 -0.10 16 36 H 0.11 1.16 7.52 -51.93 -0.39 0.77 16 37 H 0.11 0.63 7.83 -51.93 -0.41 0.22 16 38 H 0.40 5.06 6.26 -40.82 -0.26 4.81 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.02 0.38 7.13 -51.93 -0.37 0.01 16 42 H 0.06 1.22 4.30 -51.93 -0.22 1.00 16 43 H 0.05 0.99 8.12 -51.93 -0.42 0.57 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.04 0.86 2.25 -51.93 -0.12 0.74 16 46 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 47 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 370.65 15.07 5.59 5.59 Total: -1.00 -38.06 370.65 -6.10 -44.16 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -7.22 Total: 0.88 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 0.08 Total: 9.47 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.42 Total: -49.18 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.24 Total: -27.85 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -3.87 Total: 16.94 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.06 -6.10 -44.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.615 kcal (2) G-P(sol) polarization free energy of solvation -38.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds