Wall clock time and date at job start Fri Apr 10 2020 18:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47531 * 2 1 4 4 C 1.46312 * 119.91651 * 89.99780 * 3 2 1 5 5 C 1.52606 * 110.54358 * 142.46197 * 4 3 2 6 6 N 1.46328 * 110.54217 * 51.55337 * 5 4 3 7 7 C 1.46496 * 119.91339 * 142.47945 * 6 5 4 8 8 C 1.50703 * 109.47057 * 90.00667 * 7 6 5 9 9 O 1.21282 * 119.99935 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00362 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00487 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47650 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.46734 * 300.00343 * 12 11 10 14 14 C 1.53002 * 109.47008 * 59.99640 * 12 11 10 15 15 C 1.50692 * 109.47337 * 179.97438 * 12 11 10 16 16 H 1.08000 * 120.00350 * 1.34863 * 15 12 11 17 17 C 1.37876 * 120.00038 * 181.34295 * 15 12 11 18 18 N 1.31513 * 120.00235 * 193.97553 * 17 15 12 19 19 Si 1.86808 * 120.00013 * 13.98077 * 17 15 12 20 20 H 1.48498 * 109.47004 * 84.54516 * 19 17 15 21 21 H 1.48500 * 109.47099 * 204.54696 * 19 17 15 22 22 H 1.48500 * 109.46861 * 324.54570 * 19 17 15 23 23 C 1.34802 * 120.16390 * 322.76082 * 6 5 4 24 24 O 1.21345 * 120.46367 * 185.72615 * 23 6 5 25 25 C 1.34806 * 119.91644 * 269.98503 * 3 2 1 26 26 O 1.21348 * 120.46688 * 5.98816 * 25 3 2 27 27 H 1.09000 * 109.47362 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46733 * 300.00007 * 1 2 3 29 29 H 1.08998 * 109.47210 * 59.99776 * 1 2 3 30 30 H 1.09007 * 109.46733 * 239.99993 * 2 1 3 31 31 H 1.08998 * 109.47210 * 120.00224 * 2 1 3 32 32 H 1.09004 * 109.26628 * 22.18806 * 4 3 2 33 33 H 1.09002 * 109.26410 * 262.73374 * 4 3 2 34 34 H 1.09003 * 109.25914 * 291.28590 * 5 4 3 35 35 H 1.08993 * 109.26660 * 171.83621 * 5 4 3 36 36 H 1.08994 * 109.46974 * 210.00233 * 7 6 5 37 37 H 1.08996 * 109.47713 * 330.00691 * 7 6 5 38 38 H 0.97000 * 119.99873 * 0.02562 * 10 8 7 39 39 H 1.09006 * 109.46809 * 300.00433 * 11 10 8 40 40 H 1.08994 * 109.47077 * 59.99543 * 11 10 8 41 41 H 1.08992 * 109.47473 * 69.36590 * 13 12 11 42 42 H 1.08995 * 109.46664 * 189.36803 * 13 12 11 43 43 H 1.09003 * 109.46692 * 309.36249 * 13 12 11 44 44 H 1.08994 * 109.47113 * 60.00436 * 14 12 11 45 45 H 1.09004 * 109.46734 * 180.02562 * 14 12 11 46 46 H 1.09004 * 109.47031 * 300.00264 * 14 12 11 47 47 H 0.97004 * 119.99915 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2617 2.0692 1.2682 5 6 3.4990 2.9566 1.1672 6 7 3.4097 3.8311 -0.0026 7 6 3.9088 5.2063 0.0734 8 6 5.3610 5.2365 -0.3284 9 8 5.9237 4.2103 -0.6465 10 7 6.0344 6.4039 -0.3343 11 6 7.4462 6.4333 -0.7244 12 6 7.9676 7.8695 -0.6452 13 6 7.1584 8.7587 -1.5915 14 6 7.8236 8.3860 0.7878 15 6 9.4200 7.8995 -1.0458 16 1 9.9153 6.9892 -1.3496 17 6 10.1165 9.0892 -1.0247 18 7 11.2834 9.1788 -1.6246 19 14 9.4028 10.5738 -0.1436 20 1 9.7420 10.5028 1.3003 21 1 9.9724 11.8157 -0.7254 22 1 7.9267 10.5831 -0.3055 23 6 2.8641 3.3762 -1.1482 24 8 2.8802 4.0592 -2.1511 25 6 2.2429 2.0149 -1.1684 26 8 1.9420 1.4905 -2.2206 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.4125 1.3301 2.0551 33 1 1.3968 2.6849 1.5149 34 1 4.3857 2.3287 1.0798 35 1 3.5785 3.5666 2.0670 36 1 3.3322 5.8399 -0.6004 37 1 3.8067 5.5741 1.0944 38 1 5.5845 7.2246 -0.0796 39 1 8.0227 5.8000 -0.0500 40 1 7.5489 6.0649 -1.7451 41 1 6.1447 8.8707 -1.2069 42 1 7.6307 9.7385 -1.6620 43 1 7.1235 8.3002 -2.5798 44 1 8.4000 7.7525 1.4620 45 1 8.1946 9.4094 0.8441 46 1 6.7731 8.3642 1.0780 47 1 11.7732 10.0160 -1.6100 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457990989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:30 Heat of formation + Delta-G solvation = -103.593163 kcal Electronic energy + Delta-G solvation = -28407.440925 eV Core-core repulsion = 24397.409716 eV Total energy + Delta-G solvation = -4010.031209 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.32083 -40.83614 -39.60294 -38.55331 -38.14337 -36.03075 -35.01055 -33.50924 -32.71431 -30.42191 -29.78406 -28.00485 -27.44338 -26.87870 -25.38215 -24.94650 -23.12274 -21.67377 -20.96261 -19.45993 -19.32013 -18.58617 -18.27384 -18.00919 -17.41170 -17.04170 -16.92246 -16.56845 -16.20724 -15.84404 -15.53391 -15.31201 -15.01921 -14.91620 -14.76282 -14.74951 -14.33067 -14.16808 -13.98493 -13.75265 -13.73299 -13.58069 -13.21109 -12.88364 -12.85478 -12.64649 -12.49915 -12.39452 -12.16401 -11.94404 -11.89693 -11.75917 -11.27338 -11.04430 -10.83026 -10.61841 -10.40179 -10.13195 -10.01524 -9.80820 -8.30174 -6.32618 0.20090 1.25784 1.37159 1.39087 1.52653 1.63135 1.70383 2.06445 2.35633 2.39140 3.05720 3.10838 3.66218 3.79687 3.98238 4.08670 4.16186 4.17539 4.31915 4.32223 4.36752 4.38626 4.42664 4.52480 4.62996 4.72991 4.77930 4.84619 4.86137 4.93235 4.95798 4.97701 5.04579 5.07987 5.18222 5.29924 5.36432 5.43198 5.54464 5.72442 5.74323 5.80420 6.03595 6.29601 6.33986 6.62932 6.72431 6.84773 7.30730 7.32526 8.87220 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.033904 B = 0.002429 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.668151 B =11523.007121 C =11691.485322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.102 3.898 3 N -0.589 5.589 4 C 0.091 3.909 5 C 0.083 3.917 6 N -0.575 5.575 7 C 0.098 3.902 8 C 0.485 3.515 9 O -0.589 6.589 10 N -0.707 5.707 11 C 0.160 3.840 12 C 0.027 3.973 13 C -0.143 4.143 14 C -0.145 4.145 15 C -0.520 4.520 16 H 0.022 0.978 17 C 0.011 3.989 18 N -0.949 5.949 19 Si 0.950 3.050 20 H -0.277 1.277 21 H -0.318 1.318 22 H -0.201 1.201 23 C 0.505 3.495 24 O -0.541 6.541 25 C 0.508 3.492 26 O -0.543 6.543 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.028 0.972 30 H 0.059 0.941 31 H 0.128 0.872 32 H 0.152 0.848 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.155 0.845 36 H 0.119 0.881 37 H 0.179 0.821 38 H 0.415 0.585 39 H 0.045 0.955 40 H 0.026 0.974 41 H 0.071 0.929 42 H 0.046 0.954 43 H 0.032 0.968 44 H 0.049 0.951 45 H 0.034 0.966 46 H 0.082 0.918 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.413 -12.114 17.873 34.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.019 4.019 3 N -0.325 5.325 4 C -0.029 4.029 5 C -0.038 4.038 6 N -0.309 5.309 7 C -0.028 4.028 8 C 0.271 3.729 9 O -0.470 6.470 10 N -0.360 5.360 11 C 0.035 3.965 12 C 0.026 3.974 13 C -0.200 4.200 14 C -0.201 4.201 15 C -0.558 4.558 16 H 0.040 0.960 17 C -0.186 4.186 18 N -0.588 5.588 19 Si 0.779 3.221 20 H -0.204 1.204 21 H -0.248 1.248 22 H -0.124 1.124 23 C 0.288 3.712 24 O -0.415 6.415 25 C 0.290 3.710 26 O -0.418 6.418 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.146 0.854 32 H 0.169 0.831 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.173 0.827 36 H 0.137 0.863 37 H 0.196 0.804 38 H 0.253 0.747 39 H 0.064 0.936 40 H 0.044 0.956 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.052 0.948 46 H 0.101 0.899 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.037 -12.693 16.527 33.350 hybrid contribution 1.024 0.896 -0.697 1.529 sum -25.013 -11.797 15.830 31.865 Atomic orbital electron populations 1.22093 0.94670 1.03426 1.01906 1.21854 0.95461 0.79969 1.04614 1.48334 1.63215 1.15306 1.05611 1.22378 0.98016 0.97722 0.84827 1.22407 0.98869 0.93913 0.88577 1.47766 1.57191 1.13906 1.12057 1.21763 0.89013 0.83746 1.08268 1.21917 0.90702 0.83164 0.77108 1.90698 1.71300 1.34979 1.49980 1.45987 1.11753 1.10303 1.67941 1.20960 0.80405 0.97530 0.97561 1.18659 0.93397 0.91433 0.93917 1.22243 0.99179 0.99554 0.99013 1.22264 1.01680 0.99377 0.96792 1.21047 0.95403 0.94313 1.45040 0.95994 1.25969 0.95158 1.02221 0.95251 1.70134 1.17181 1.27906 1.43583 0.86255 0.81700 0.76348 0.77812 1.20388 1.24820 1.12428 1.20664 0.79588 0.87374 0.83610 1.90764 1.58340 1.58109 1.34311 1.20319 0.79594 0.86101 0.85015 1.90743 1.51404 1.66755 1.32891 0.89722 0.90303 0.95315 0.92236 0.85402 0.83072 0.87871 0.91502 0.82719 0.86261 0.80377 0.74652 0.93614 0.95583 0.91033 0.93553 0.94927 0.93214 0.94788 0.89936 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 10.24 71.98 0.74 -0.74 16 2 C 0.10 1.05 6.12 86.38 0.53 1.57 16 3 N -0.59 -8.28 2.81 -824.32 -2.32 -10.59 16 4 C 0.09 0.29 6.60 86.28 0.57 0.86 16 5 C 0.08 0.63 6.60 86.28 0.57 1.20 16 6 N -0.57 -10.63 2.30 -828.67 -1.90 -12.53 16 7 C 0.10 1.58 5.89 85.63 0.50 2.08 16 8 C 0.48 13.78 7.90 87.66 0.69 14.47 16 9 O -0.59 -23.31 16.43 -3.04 -0.05 -23.36 16 10 N -0.71 -19.82 5.00 -463.07 -2.32 -22.14 16 11 C 0.16 6.32 4.49 86.38 0.39 6.70 16 12 C 0.03 1.13 0.50 -52.93 -0.03 1.10 16 13 C -0.14 -5.40 7.53 71.98 0.54 -4.86 16 14 C -0.14 -4.97 7.52 71.98 0.54 -4.43 16 15 C -0.52 -28.84 8.62 25.60 0.22 -28.62 16 16 H 0.02 1.40 7.99 -2.91 -0.02 1.37 16 17 C 0.01 0.63 5.32 84.65 0.45 1.08 16 18 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 19 Si 0.95 42.09 22.79 68.60 1.56 43.65 16 20 H -0.28 -11.80 7.10 99.48 0.71 -11.09 16 21 H -0.32 -14.74 7.11 99.48 0.71 -14.03 16 22 H -0.20 -7.36 4.65 99.48 0.46 -6.90 16 23 C 0.51 14.56 7.60 87.32 0.66 15.22 16 24 O -0.54 -20.97 16.67 11.57 0.19 -20.78 16 25 C 0.51 13.62 7.60 87.32 0.66 14.28 16 26 O -0.54 -19.54 16.67 11.56 0.19 -19.35 16 27 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.08 0.39 8.14 -2.38 -0.02 0.37 16 29 H 0.03 0.45 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.96 7.52 -2.38 -0.02 0.94 16 31 H 0.13 0.24 7.83 -2.39 -0.02 0.22 16 32 H 0.15 -0.74 7.79 -2.38 -0.02 -0.76 16 33 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.16 -0.25 7.79 -2.39 -0.02 -0.27 16 36 H 0.12 1.98 7.52 -2.39 -0.02 1.96 16 37 H 0.18 0.61 7.83 -2.39 -0.02 0.60 16 38 H 0.42 8.39 6.26 -92.71 -0.58 7.81 16 39 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.07 2.01 7.13 -2.39 -0.02 1.99 16 42 H 0.05 1.85 4.30 -2.39 -0.01 1.84 16 43 H 0.03 1.31 8.12 -2.39 -0.02 1.29 16 44 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.03 1.24 2.25 -2.38 -0.01 1.23 16 46 H 0.08 1.98 6.86 -2.38 -0.02 1.97 16 47 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -97.38 370.65 2.87 -94.50 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.17 Total: 9.79 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: 7.04 Total: 19.93 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -6.24 Total: -104.40 kcal Atomic # 8 Polarization: -63.82 SS G_CDS: 0.34 Total: -63.48 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 1.56 Total: 43.65 kcal Total: -97.38 2.87 -94.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.088 kcal (2) G-P(sol) polarization free energy of solvation -97.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds