Wall clock time and date at job start Fri Apr 10 2020 18:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00160 * 2 1 4 4 C 1.50694 * 109.47115 * 270.00206 * 3 2 1 5 5 H 1.08000 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99902 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.34780 * 120.00033 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00111 * 180.02562 * 12 2 1 14 14 C 1.50707 * 120.00018 * 359.97438 * 12 2 1 15 15 C 1.52994 * 109.47057 * 180.02562 * 14 12 2 16 16 N 1.46903 * 109.46904 * 180.02562 * 15 14 12 17 17 C 1.46655 * 110.99872 * 66.04495 * 16 15 14 18 18 C 1.53367 * 110.37822 * 184.49936 * 17 16 15 19 19 C 1.52583 * 108.37300 * 301.95625 * 18 17 16 20 20 H 1.08998 * 108.89599 * 300.88880 * 19 18 17 21 21 N 1.45498 * 112.70316 * 179.97438 * 19 18 17 22 22 C 1.33472 * 121.89355 * 212.87842 * 21 19 18 23 23 O 1.21500 * 118.39423 * 185.12481 * 22 21 19 24 24 O 1.34085 * 123.46597 * 5.80445 * 22 21 19 25 25 C 1.45694 * 118.24190 * 345.71803 * 24 22 21 26 26 C 1.52851 * 107.56139 * 42.40938 * 25 24 22 27 27 H 1.08993 * 109.43189 * 57.22168 * 26 25 24 28 28 C 1.47188 * 111.00021 * 191.45692 * 16 15 14 29 29 H 1.08996 * 109.47419 * 90.00053 * 1 2 3 30 30 H 1.09004 * 109.47352 * 209.99756 * 1 2 3 31 31 H 1.08995 * 109.47003 * 329.99670 * 1 2 3 32 32 H 1.09007 * 109.47078 * 149.99845 * 3 2 1 33 33 H 1.09003 * 109.46733 * 30.00568 * 3 2 1 34 34 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47158 * 300.00755 * 14 12 2 36 36 H 1.09008 * 109.46644 * 60.00137 * 14 12 2 37 37 H 1.09003 * 109.47146 * 299.99841 * 15 14 12 38 38 H 1.08995 * 109.47090 * 60.00460 * 15 14 12 39 39 H 1.08998 * 109.32374 * 304.78267 * 17 16 15 40 40 H 1.09005 * 109.31625 * 64.22756 * 17 16 15 41 41 H 1.08997 * 109.68008 * 61.67650 * 18 17 16 42 42 H 1.08996 * 109.68658 * 182.19736 * 18 17 16 43 43 H 0.97005 * 119.34191 * 33.63120 * 21 19 18 44 44 H 1.08992 * 109.83989 * 282.89084 * 25 24 22 45 45 H 1.09009 * 109.83786 * 161.92183 * 25 24 22 46 46 H 1.09002 * 109.62010 * 294.21993 * 28 16 15 47 47 H 1.09002 * 109.62387 * 54.78454 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.5543 3.6175 -0.6730 8 14 3.4388 3.4163 -3.4339 9 1 4.1813 4.7025 -3.4339 10 1 4.2411 2.3811 -4.1336 11 1 2.1415 3.5943 -4.1342 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3853 -2.4724 -0.0005 15 6 2.3796 -3.6353 -0.0005 16 7 1.6450 -4.9075 -0.0011 17 6 0.9013 -5.0843 -1.2527 18 6 0.0525 -6.3603 -1.1938 19 6 0.9801 -7.5433 -0.9323 20 1 1.7155 -7.5993 -1.7349 21 7 0.2677 -8.8097 -0.8576 22 6 0.6716 -9.8000 -0.0591 23 8 0.0863 -10.8632 -0.1158 24 8 1.6824 -9.6804 0.8138 25 6 2.5742 -8.5358 0.6833 26 6 1.7102 -7.3084 0.3949 27 1 0.9792 -7.1837 1.1937 28 6 2.5475 -6.0377 0.2718 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 3.1499 1.1383 0.5139 33 1 1.6084 2.0283 0.5139 34 1 4.0318 4.4430 -0.8503 35 1 0.7589 -2.5303 0.8896 36 1 0.7583 -2.5299 -0.8904 37 1 3.0062 -3.5775 -0.8905 38 1 3.0061 -3.5775 0.8895 39 1 0.2497 -4.2247 -1.4095 40 1 1.6041 -5.1567 -2.0827 41 1 -0.6760 -6.2797 -0.3871 42 1 -0.4647 -6.5014 -2.1428 43 1 -0.5177 -8.9466 -1.4102 44 1 3.2695 -8.7005 -0.1398 45 1 3.1267 -8.3895 1.6116 46 1 3.2580 -6.1450 -0.5479 47 1 3.0838 -5.8611 1.2041 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493472795.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:33 Heat of formation + Delta-G solvation = -135.991801 kcal Electronic energy + Delta-G solvation = -27961.934239 eV Core-core repulsion = 23950.498120 eV Total energy + Delta-G solvation = -4011.436119 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.34433 -40.74634 -39.80430 -38.12610 -36.80877 -36.45734 -34.74496 -33.85116 -32.64084 -31.24086 -29.50202 -27.42405 -27.22445 -26.09651 -24.78940 -24.14369 -23.15330 -21.40034 -20.95719 -19.85508 -19.40544 -18.69980 -18.52858 -17.89422 -17.29573 -17.07682 -16.76849 -16.45225 -16.20937 -16.08422 -15.75080 -15.55876 -15.28294 -14.87157 -14.64484 -14.55300 -14.09681 -13.93052 -13.82076 -13.56667 -13.41896 -13.26680 -12.95713 -12.79851 -12.73771 -12.62033 -12.51244 -12.26865 -12.23383 -12.18173 -11.89642 -11.76770 -11.70972 -11.62875 -11.14396 -10.63811 -10.56623 -10.34620 -9.39417 -9.32519 -8.21906 -6.36851 1.36807 1.40611 1.48098 1.54112 1.69654 1.88600 2.26967 2.38143 2.45208 2.85419 3.07370 3.31005 3.48814 3.72469 3.88373 3.94974 3.98197 4.12273 4.20474 4.24150 4.28665 4.39408 4.44299 4.51122 4.62289 4.64980 4.70148 4.76683 4.84251 4.93328 4.96432 4.99909 5.02585 5.04803 5.07498 5.09361 5.24363 5.28797 5.57132 5.75319 5.85849 5.97660 6.06842 6.11500 6.56274 6.70484 6.83084 7.01189 7.29179 7.52241 8.84750 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.028557 B = 0.002127 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.269030 B =13162.412257 C =13240.214899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.613 5.613 3 C 0.258 3.742 4 C -0.541 4.541 5 H 0.053 0.947 6 C 0.005 3.995 7 N -0.929 5.929 8 Si 0.967 3.033 9 H -0.280 1.280 10 H -0.277 1.277 11 H -0.260 1.260 12 C 0.493 3.507 13 O -0.602 6.602 14 C -0.117 4.117 15 C 0.084 3.916 16 N -0.541 5.541 17 C 0.050 3.950 18 C -0.110 4.110 19 C 0.130 3.870 20 H 0.086 0.914 21 N -0.707 5.707 22 C 0.658 3.342 23 O -0.591 6.591 24 O -0.361 6.361 25 C 0.064 3.936 26 C -0.129 4.129 27 H 0.096 0.904 28 C 0.071 3.929 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.066 0.934 32 H -0.003 1.003 33 H 0.022 0.978 34 H 0.267 0.733 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.026 0.974 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.038 0.962 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.425 0.575 44 H 0.095 0.905 45 H 0.139 0.861 46 H 0.050 0.950 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.659 -21.386 -0.413 23.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.344 5.344 3 C 0.136 3.864 4 C -0.580 4.580 5 H 0.072 0.928 6 C -0.194 4.194 7 N -0.569 5.569 8 Si 0.792 3.208 9 H -0.205 1.205 10 H -0.202 1.202 11 H -0.184 1.184 12 C 0.283 3.717 13 O -0.484 6.484 14 C -0.156 4.156 15 C -0.044 4.044 16 N -0.266 5.266 17 C -0.078 4.078 18 C -0.148 4.148 19 C 0.026 3.974 20 H 0.104 0.896 21 N -0.373 5.373 22 C 0.411 3.589 23 O -0.480 6.480 24 O -0.272 6.272 25 C -0.009 4.009 26 C -0.149 4.149 27 H 0.114 0.886 28 C -0.057 4.057 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.085 0.915 32 H 0.015 0.985 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.044 0.956 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.118 0.882 43 H 0.265 0.735 44 H 0.113 0.887 45 H 0.157 0.843 46 H 0.068 0.932 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.300 -21.812 0.331 23.341 hybrid contribution 0.845 0.980 -1.572 2.036 sum -7.455 -20.832 -1.242 22.161 Atomic orbital electron populations 1.21926 0.77788 1.04034 1.02433 1.48209 1.08478 1.06475 1.71227 1.18758 0.91130 0.80587 0.95932 1.21671 1.36733 1.06502 0.93096 0.92829 1.25889 0.95006 0.96513 1.01983 1.70047 1.38899 1.14832 1.33098 0.85471 0.78839 0.77340 0.79185 1.20487 1.20235 1.18440 1.21452 0.87811 0.86763 0.75716 1.90638 1.16781 1.88293 1.52656 1.21592 0.98956 0.88729 1.06357 1.21566 0.94127 0.87458 1.01289 1.61598 1.28167 1.01285 1.35531 1.22207 0.97123 0.98806 0.89678 1.21759 0.97573 0.91084 1.04415 1.21258 0.95046 0.83222 0.97880 0.89615 1.45153 1.33584 1.13920 1.44619 1.17868 0.79757 0.83638 0.77602 1.90999 1.57524 1.28283 1.71218 1.86602 1.39774 1.49135 1.51651 1.23750 0.89928 0.80553 1.06675 1.21999 0.99319 0.94912 0.98671 0.88565 1.21889 0.93214 0.87902 1.02692 0.92343 0.87881 0.91498 0.98524 0.96022 0.92432 0.86061 0.87113 0.95564 0.90946 0.88845 0.94338 0.89949 0.88214 0.73504 0.88669 0.84305 0.93194 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.17 10.28 127.77 1.31 3.48 16 2 N -0.61 -24.61 2.86 -851.14 -2.43 -27.04 16 3 C 0.26 13.64 5.20 85.63 0.45 14.09 16 4 C -0.54 -30.66 9.39 25.60 0.24 -30.42 16 5 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 6 C 0.00 0.28 5.46 84.66 0.46 0.75 16 7 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 8 Si 0.97 44.05 29.54 68.60 2.03 46.07 16 9 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 12 C 0.49 18.82 7.67 87.66 0.67 19.50 16 13 O -0.60 -29.46 15.56 -3.04 -0.05 -29.51 16 14 C -0.12 -2.65 4.18 29.85 0.12 -2.53 16 15 C 0.08 1.80 4.26 86.30 0.37 2.17 16 16 N -0.54 -7.63 4.61 -896.02 -4.13 -11.76 16 17 C 0.05 0.54 5.27 86.47 0.46 1.00 16 18 C -0.11 -0.79 5.84 30.58 0.18 -0.61 16 19 C 0.13 1.14 2.80 45.14 0.13 1.27 16 20 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 21 N -0.71 -8.90 5.30 -575.65 -3.05 -11.95 16 22 C 0.66 13.83 8.52 129.99 1.11 14.94 16 23 O -0.59 -17.78 17.95 19.99 0.36 -17.42 16 24 O -0.36 -6.87 10.45 -49.94 -0.52 -7.39 16 25 C 0.06 0.61 6.69 71.93 0.48 1.10 16 26 C -0.13 -1.23 2.22 -10.86 -0.02 -1.25 16 27 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 28 C 0.07 0.77 4.95 86.14 0.43 1.20 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.10 1.84 6.44 -2.39 -0.02 1.83 16 31 H 0.07 1.82 7.89 -2.39 -0.02 1.80 16 32 H 0.00 -0.21 7.42 -2.38 -0.02 -0.22 16 33 H 0.02 1.17 7.89 -2.39 -0.02 1.15 16 34 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 35 H 0.12 2.19 7.40 -2.39 -0.02 2.17 16 36 H 0.11 2.03 6.42 -2.38 -0.02 2.01 16 37 H 0.03 0.67 8.08 -2.39 -0.02 0.65 16 38 H 0.07 1.75 7.93 -2.39 -0.02 1.73 16 39 H 0.09 0.97 6.25 -2.39 -0.01 0.96 16 40 H 0.04 0.45 8.14 -2.38 -0.02 0.43 16 41 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.43 4.23 8.77 -92.70 -0.81 3.41 16 44 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.14 0.77 8.14 -2.38 -0.02 0.76 16 46 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.09 0.97 8.02 -2.39 -0.02 0.96 16 Total: -1.00 -82.42 375.54 -0.97 -83.39 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 0.16 Total: 6.39 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: 6.38 Total: 24.67 kcal Atomic # 7 Polarization: -96.86 SS G_CDS: -9.33 Total: -106.19 kcal Atomic # 8 Polarization: -54.11 SS G_CDS: -0.21 Total: -54.32 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -82.42 -0.97 -83.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493472795.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.600 kcal (2) G-P(sol) polarization free energy of solvation -82.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds