Wall clock time and date at job start Fri Apr 10 2020 18:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09001 * 109.46761 * 2 1 4 4 C 1.50703 * 109.46721 * 240.00565 * 2 1 3 5 5 O 1.21286 * 119.99567 * 265.64762 * 4 2 1 6 6 N 1.34771 * 120.00115 * 85.65129 * 4 2 1 7 7 C 1.46491 * 120.00315 * 359.97438 * 6 4 2 8 8 C 1.46509 * 119.99938 * 179.97438 * 6 4 2 9 9 C 1.50699 * 109.46719 * 89.99799 * 8 6 4 10 10 H 1.07998 * 120.00258 * 0.02562 * 9 8 6 11 11 C 1.37884 * 119.99796 * 179.97438 * 9 8 6 12 12 N 1.31521 * 119.99783 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00242 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47518 * 270.00672 * 13 11 9 15 15 H 1.48510 * 109.46947 * 30.00267 * 13 11 9 16 16 H 1.48502 * 109.47319 * 150.00032 * 13 11 9 17 17 N 1.46890 * 109.47297 * 120.00437 * 2 1 3 18 18 C 1.46658 * 111.00134 * 48.96558 * 17 2 1 19 19 C 1.53364 * 110.37081 * 184.50717 * 18 17 2 20 20 C 1.52580 * 108.36335 * 301.94909 * 19 18 17 21 21 H 1.09006 * 108.31834 * 301.24362 * 20 19 18 22 22 N 1.45502 * 112.70109 * 180.69390 * 20 19 18 23 23 C 1.34240 * 121.32570 * 213.62910 * 22 20 19 24 24 O 1.21513 * 118.14261 * 184.42340 * 23 22 20 25 25 O 1.34087 * 123.72147 * 4.43311 * 23 22 20 26 26 C 1.45707 * 118.15146 * 346.25875 * 25 23 22 27 27 C 1.52849 * 107.56078 * 42.66088 * 26 25 23 28 28 H 1.09002 * 109.43462 * 56.96636 * 27 26 25 29 29 C 1.47179 * 111.00192 * 174.39590 * 17 2 1 30 30 H 1.08996 * 109.47119 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46859 * 299.99444 * 1 2 3 32 32 H 1.09003 * 109.46920 * 59.99498 * 1 2 3 33 33 H 1.09002 * 109.47356 * 270.00210 * 7 6 4 34 34 H 1.09005 * 109.47143 * 30.00236 * 7 6 4 35 35 H 1.09000 * 109.47677 * 150.00048 * 7 6 4 36 36 H 1.09006 * 109.46894 * 330.00407 * 8 6 4 37 37 H 1.08991 * 109.47002 * 210.00185 * 8 6 4 38 38 H 0.96995 * 119.99571 * 179.97438 * 12 11 9 39 39 H 1.09001 * 109.31492 * 304.77992 * 18 17 2 40 40 H 1.08990 * 109.31748 * 64.22619 * 18 17 2 41 41 H 1.09006 * 109.68326 * 182.23191 * 19 18 17 42 42 H 1.08998 * 109.69256 * 61.66906 * 19 18 17 43 43 H 0.97000 * 119.33685 * 33.64704 * 22 20 19 44 44 H 1.08998 * 109.94956 * 283.08435 * 26 25 23 45 45 H 1.09002 * 109.73404 * 162.11583 * 26 25 23 46 46 H 1.09005 * 109.62117 * 294.21224 * 29 17 2 47 47 H 1.08992 * 109.62619 * 54.78247 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.3096 -1.8899 -1.1791 6 7 2.1735 -0.0348 -2.3882 7 6 1.8382 1.3899 -2.4505 8 6 2.6623 -0.7252 -3.5844 9 6 1.4943 -1.2918 -4.3497 10 1 0.4885 -1.1513 -3.9822 11 6 1.7097 -1.9887 -5.5198 12 7 2.9345 -2.1594 -5.9676 13 14 0.2620 -2.6905 -6.4690 14 1 -0.0216 -4.0680 -5.9923 15 1 -0.9331 -1.8359 -6.2522 16 1 0.5895 -2.7253 -7.9170 17 7 2.0198 -0.6925 1.1993 18 6 1.3475 -1.9846 1.3715 19 6 1.7865 -2.6439 2.6847 20 6 3.3028 -2.8113 2.6552 21 1 3.5631 -3.4237 1.7918 22 7 3.8211 -3.4467 3.8572 23 6 5.0241 -3.1207 4.3556 24 8 5.4357 -3.7444 5.3138 25 8 5.7975 -2.1458 3.8562 26 6 5.4620 -1.6058 2.5451 27 6 3.9446 -1.4287 2.4939 28 1 3.6269 -0.7836 3.3130 29 6 3.4849 -0.8295 1.1681 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 0.7890 1.5047 -2.7229 34 1 2.0128 1.8472 -1.4765 35 1 2.4632 1.8780 -3.1983 36 1 3.3303 -1.5345 -3.2892 37 1 3.2027 -0.0199 -4.2156 38 1 3.0860 -2.6500 -6.7905 39 1 0.2686 -1.8302 1.3884 40 1 1.6026 -2.6377 0.5370 41 1 1.3111 -3.6200 2.7823 42 1 1.5032 -2.0113 3.5259 43 1 3.2867 -4.1196 4.3072 44 1 5.7803 -2.2976 1.7654 45 1 5.9518 -0.6417 2.4079 46 1 3.7736 -1.4882 0.3490 47 1 3.9413 0.1508 1.0315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493713370.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:43 Heat of formation + Delta-G solvation = -96.889382 kcal Electronic energy + Delta-G solvation = -29503.117956 eV Core-core repulsion = 25493.377445 eV Total energy + Delta-G solvation = -4009.740511 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.45422 -40.12806 -38.18709 -37.02942 -35.67697 -34.89161 -33.14763 -32.58994 -31.72151 -29.74720 -27.97148 -26.50542 -26.00113 -24.89605 -23.67823 -23.26641 -22.08019 -20.60603 -20.08616 -18.67239 -18.26960 -17.55018 -16.79990 -16.64549 -16.27266 -16.05830 -15.42658 -15.25234 -14.97808 -14.84540 -14.42325 -14.28163 -13.99279 -13.92977 -13.70715 -13.18826 -12.98307 -12.53313 -12.37988 -12.22814 -12.19198 -12.03765 -11.70748 -11.65741 -11.43047 -11.38098 -11.19807 -11.10382 -10.92928 -10.76947 -10.75498 -10.63995 -10.25577 -10.23003 -9.78068 -9.65524 -9.40841 -8.53227 -7.98043 -7.77800 -6.14428 -4.19484 2.44889 2.68068 3.15304 3.23008 3.23554 3.30167 3.32276 3.64394 3.82816 4.09573 4.29951 4.35543 4.59253 4.75311 4.85053 4.93085 4.95454 5.04152 5.08290 5.17067 5.20874 5.26417 5.32399 5.44072 5.51269 5.60628 5.63156 5.69444 5.77493 5.82154 5.85421 5.90750 5.96369 6.05037 6.17178 6.25986 6.62072 6.81056 6.93525 6.97001 7.29353 7.39520 7.47747 7.80958 7.96723 8.11840 8.24513 8.76343 8.91592 9.45923 10.93674 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.017589 B = 0.003184 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.559231 B = 8790.778396 C = 9128.358370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.061 3.939 3 H 0.103 0.897 4 C 0.479 3.521 5 O -0.542 6.542 6 N -0.596 5.596 7 C 0.081 3.919 8 C 0.245 3.755 9 C -0.526 4.526 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.894 5.894 13 Si 0.898 3.102 14 H -0.280 1.280 15 H -0.274 1.274 16 H -0.285 1.285 17 N -0.514 5.514 18 C 0.034 3.966 19 C -0.116 4.116 20 C 0.129 3.871 21 H 0.080 0.920 22 N -0.724 5.724 23 C 0.659 3.341 24 O -0.543 6.543 25 O -0.342 6.342 26 C 0.067 3.933 27 C -0.131 4.131 28 H 0.099 0.901 29 C 0.056 3.944 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.031 0.969 38 H 0.264 0.736 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.418 0.582 44 H 0.083 0.917 45 H 0.118 0.882 46 H 0.069 0.931 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.297 6.434 14.965 16.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.051 4.051 3 H 0.120 0.880 4 C 0.264 3.736 5 O -0.422 6.422 6 N -0.328 5.328 7 C -0.063 4.063 8 C 0.125 3.875 9 C -0.565 4.565 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.533 5.533 13 Si 0.726 3.274 14 H -0.206 1.206 15 H -0.199 1.199 16 H -0.211 1.211 17 N -0.238 5.238 18 C -0.094 4.094 19 C -0.154 4.154 20 C 0.024 3.976 21 H 0.098 0.902 22 N -0.391 5.391 23 C 0.412 3.588 24 O -0.429 6.429 25 O -0.253 6.253 26 C -0.008 4.008 27 C -0.151 4.151 28 H 0.117 0.883 29 C -0.073 4.073 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.256 0.744 44 H 0.101 0.899 45 H 0.136 0.864 46 H 0.087 0.913 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.566 6.007 15.665 16.851 hybrid contribution -1.017 -0.996 -1.530 2.090 sum -2.583 5.011 14.136 15.218 Atomic orbital electron populations 1.21825 0.92142 1.03244 1.02760 1.21918 0.97377 0.98768 0.87010 0.87974 1.21435 0.79201 0.87814 0.85134 1.90587 1.51471 1.15544 1.84549 1.48303 1.63316 1.09619 1.11534 1.21721 1.01019 0.82318 1.01218 1.19309 0.95247 0.92719 0.80186 1.21379 0.93229 1.34896 1.07023 0.92551 1.24940 0.95938 0.95892 0.97321 1.69926 1.19593 1.41350 1.22432 0.86502 0.82422 0.79586 0.78935 1.20556 1.19912 1.21083 1.62187 1.04627 1.21820 1.35162 1.22419 0.99279 0.90590 0.97105 1.21796 0.92783 1.01434 0.99432 1.21115 0.95801 0.93375 0.87321 0.90238 1.45424 1.18562 1.44673 1.30432 1.17963 0.79894 0.78758 0.82176 1.91018 1.73000 1.50086 1.28780 1.86635 1.52523 1.50077 1.36042 1.23477 0.95111 1.00826 0.81350 1.21996 0.94602 0.97046 1.01427 0.88291 1.22014 0.88579 1.01447 0.95232 0.91583 0.91031 0.91360 0.92954 0.92334 0.91299 0.94000 0.95085 0.92651 0.89814 0.90144 0.90471 0.90612 0.74373 0.89882 0.86410 0.91325 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.54 37.16 0.32 -1.27 16 2 C 0.06 0.76 2.28 -68.86 -0.16 0.61 16 3 H 0.10 1.09 6.03 -51.93 -0.31 0.78 16 4 C 0.48 8.47 5.94 -10.99 -0.07 8.40 16 5 O -0.54 -11.54 11.96 5.55 0.07 -11.48 16 6 N -0.60 -11.28 2.86 -182.95 -0.52 -11.80 16 7 C 0.08 1.13 10.02 59.84 0.60 1.73 16 8 C 0.24 5.98 5.20 -5.19 -0.03 5.96 16 9 C -0.53 -14.21 9.39 -34.44 -0.32 -14.54 16 10 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 11 C 0.06 1.69 5.46 -17.81 -0.10 1.59 16 12 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 13 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 17 N -0.51 -5.91 4.67 -228.04 -1.07 -6.98 16 18 C 0.03 0.39 4.61 -3.77 -0.02 0.38 16 19 C -0.12 -1.07 5.84 -26.76 -0.16 -1.23 16 20 C 0.13 1.30 2.76 -68.54 -0.19 1.11 16 21 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 22 N -0.72 -7.65 5.36 -59.72 -0.32 -7.97 16 23 C 0.66 9.08 8.53 53.82 0.46 9.54 16 24 O -0.54 -9.42 17.96 -19.44 -0.35 -9.77 16 25 O -0.34 -4.41 10.45 -38.97 -0.41 -4.82 16 26 C 0.07 0.64 6.69 37.08 0.25 0.89 16 27 C -0.13 -1.28 2.22 -90.76 -0.20 -1.48 16 28 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 29 C 0.06 0.62 4.38 -3.89 -0.02 0.60 16 30 H 0.07 0.81 6.21 -51.93 -0.32 0.49 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.77 7.79 -51.93 -0.40 0.37 16 33 H 0.05 0.71 8.07 -51.93 -0.42 0.29 16 34 H 0.06 0.60 5.84 -51.93 -0.30 0.30 16 35 H 0.07 0.93 7.89 -51.93 -0.41 0.53 16 36 H 0.04 1.16 7.42 -51.93 -0.39 0.78 16 37 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.08 0.91 5.87 -51.93 -0.30 0.60 16 40 H 0.08 1.22 5.65 -51.93 -0.29 0.92 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.42 3.75 8.79 -40.82 -0.36 3.39 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.07 0.98 6.08 -51.93 -0.32 0.66 16 47 H 0.08 0.80 8.13 -51.93 -0.42 0.38 16 LS Contribution 364.07 15.07 5.49 5.49 Total: -1.00 -33.72 364.07 -8.19 -41.91 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -7.17 Total: 2.00 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: 0.37 Total: 12.28 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -1.17 Total: -51.73 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.69 Total: -26.07 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.72 -8.19 -41.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493713370.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.977 kcal (2) G-P(sol) polarization free energy of solvation -33.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds