Wall clock time and date at job start Fri Apr 10 2020 18:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47255 * 2 1 4 4 C 1.46502 * 120.00263 * 269.99842 * 3 2 1 5 5 C 1.50697 * 109.46955 * 270.00251 * 4 3 2 6 6 H 1.07999 * 120.00307 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99465 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00262 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99771 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47161 * 89.99862 * 9 7 5 11 11 H 1.48500 * 109.47014 * 210.00002 * 9 7 5 12 12 H 1.48504 * 109.47194 * 329.99723 * 9 7 5 13 13 C 1.34780 * 119.99975 * 89.99999 * 3 2 1 14 14 O 1.21273 * 120.00194 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99876 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46847 * 179.97438 * 15 13 3 17 17 C 1.46914 * 110.99753 * 65.89446 * 16 15 13 18 18 C 1.53180 * 109.31829 * 187.43834 * 17 16 15 19 19 N 1.47542 * 108.48131 * 305.78224 * 18 17 16 20 20 C 1.34108 * 118.65251 * 230.73132 * 19 18 17 21 21 O 1.21517 * 118.88980 * 359.40787 * 20 19 18 22 22 O 1.34362 * 122.22132 * 179.38850 * 20 19 18 23 23 C 1.45216 * 115.73761 * 25.17869 * 22 20 19 24 24 C 1.52975 * 108.34356 * 306.61423 * 23 22 20 25 25 C 1.46016 * 118.12238 * 50.85007 * 19 18 17 26 26 H 1.09003 * 107.92071 * 67.59615 * 25 19 18 27 27 C 1.46905 * 110.99680 * 189.99685 * 16 15 13 28 28 H 1.09010 * 109.46985 * 300.00245 * 1 2 3 29 29 H 1.09003 * 109.47050 * 59.99248 * 1 2 3 30 30 H 1.08994 * 109.47375 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46898 * 239.99975 * 2 1 3 32 32 H 1.09003 * 109.47167 * 119.99794 * 2 1 3 33 33 H 1.09001 * 109.46374 * 30.00093 * 4 3 2 34 34 H 1.09001 * 109.47324 * 149.99978 * 4 3 2 35 35 H 0.96997 * 120.00027 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.46822 * 60.00050 * 15 13 3 37 37 H 1.09000 * 109.46821 * 299.99695 * 15 13 3 38 38 H 1.09005 * 109.50029 * 307.38927 * 17 16 15 39 39 H 1.08994 * 109.50112 * 67.45568 * 17 16 15 40 40 H 1.09001 * 109.63427 * 65.47814 * 18 17 16 41 41 H 1.08999 * 109.63858 * 185.87715 * 18 17 16 42 42 H 1.08997 * 109.47904 * 186.97769 * 23 22 20 43 43 H 1.08996 * 109.78264 * 66.43015 * 23 22 20 44 44 H 1.09002 * 109.32478 * 297.92972 * 24 23 22 45 45 H 1.09002 * 109.32275 * 178.29422 * 24 23 22 46 46 H 1.09008 * 109.48772 * 53.43594 * 27 16 15 47 47 H 1.08994 * 109.50623 * 293.39020 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1491 2.3896 -2.8779 8 7 3.3488 3.1250 -3.6185 9 14 5.9131 2.0954 -3.4175 10 1 5.9759 0.8743 -4.2601 11 1 6.3923 3.2625 -4.2008 12 1 6.7735 1.9157 -2.2205 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9923 1.3059 2.4724 16 7 2.3110 2.2057 3.5889 17 6 1.3866 3.3470 3.6256 18 6 1.8623 4.3508 4.6804 19 7 2.0183 3.6411 5.9645 20 6 1.4379 4.1559 7.0584 21 8 0.8131 5.1933 6.9583 22 8 1.5235 3.5631 8.2611 23 6 2.6797 2.7076 8.4616 24 6 2.7306 1.6915 7.3193 25 6 2.8029 2.4097 5.9795 26 1 3.8418 2.6715 5.7790 27 6 2.3078 1.4808 4.8666 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5817 1.6877 -2.0283 34 1 2.0956 3.1411 -1.1384 35 1 3.6747 3.5148 -4.4447 36 1 2.6229 0.4186 2.5299 37 1 0.9444 1.0114 2.5303 38 1 1.3650 3.8293 2.6482 39 1 0.3864 2.9971 3.8808 40 1 2.8199 4.7744 4.3774 41 1 1.1263 5.1477 4.7859 42 1 2.5851 2.1861 9.4140 43 1 3.5885 3.3093 8.4597 44 1 1.8348 1.0712 7.3481 45 1 3.6108 1.0596 7.4376 46 1 2.9669 0.6155 4.7954 47 1 1.2950 1.1486 5.0941 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494086886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:49 Heat of formation + Delta-G solvation = -89.698318 kcal Electronic energy + Delta-G solvation = -28956.266480 eV Core-core repulsion = 24946.837797 eV Total energy + Delta-G solvation = -4009.428683 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.43401 -39.51276 -38.06985 -37.49190 -35.46599 -34.78163 -33.05083 -32.80185 -30.16307 -29.98666 -29.30599 -27.12479 -25.30392 -24.81731 -23.10386 -23.05713 -22.46721 -21.08924 -19.86167 -18.41752 -18.31717 -17.24870 -16.65977 -16.41783 -16.29783 -15.88091 -15.50761 -15.17648 -15.03464 -14.71186 -14.63077 -14.29193 -14.07611 -13.92324 -13.65424 -13.40921 -13.01510 -12.73904 -12.48365 -12.20945 -12.17324 -11.99339 -11.89466 -11.65932 -11.53418 -11.28044 -11.21221 -11.13116 -10.93288 -10.86171 -10.76129 -10.54305 -10.38611 -10.13679 -9.63732 -9.21741 -8.82648 -8.44591 -8.32172 -7.67695 -6.05360 -4.10001 2.26066 2.51968 3.21380 3.28962 3.34182 3.36848 3.42279 3.45363 4.00966 4.13563 4.21667 4.43299 4.44583 4.56771 4.71308 4.87652 4.92780 4.97705 5.07841 5.15631 5.18785 5.25005 5.28645 5.30145 5.39798 5.45386 5.49412 5.58946 5.60495 5.71547 5.83071 5.94676 5.97244 6.05167 6.18050 6.26951 6.41859 6.77879 6.92555 7.08430 7.42674 7.50321 7.53104 7.89484 7.91175 8.22325 8.39787 8.89413 9.08551 9.55252 11.02713 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018679 B = 0.002875 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.660675 B = 9736.922120 C =10084.863987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.506 3.494 14 O -0.523 6.523 15 C 0.038 3.962 16 N -0.518 5.518 17 C 0.037 3.963 18 C 0.128 3.872 19 N -0.614 5.614 20 C 0.651 3.349 21 O -0.534 6.534 22 O -0.345 6.345 23 C 0.062 3.938 24 C -0.166 4.166 25 C 0.141 3.859 26 H 0.089 0.911 27 C 0.048 3.952 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.263 0.737 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.115 0.885 39 H 0.032 0.968 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.116 0.884 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.106 0.894 46 H 0.091 0.909 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.082 -8.894 20.652 22.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.399 6.399 15 C -0.093 4.093 16 N -0.243 5.243 17 C -0.091 4.091 18 C 0.007 3.993 19 N -0.360 5.360 20 C 0.405 3.595 21 O -0.419 6.419 22 O -0.257 6.257 23 C -0.012 4.012 24 C -0.204 4.204 25 C 0.037 3.963 26 H 0.107 0.893 27 C -0.081 4.081 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.075 0.925 38 H 0.133 0.867 39 H 0.050 0.950 40 H 0.103 0.897 41 H 0.121 0.879 42 H 0.134 0.866 43 H 0.095 0.905 44 H 0.104 0.896 45 H 0.124 0.876 46 H 0.110 0.890 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.856 -7.452 20.582 22.075 hybrid contribution 0.357 -0.903 -0.432 1.063 sum -2.498 -8.355 20.150 21.956 Atomic orbital electron populations 1.22225 0.96877 1.01384 1.02257 1.21401 0.93404 0.84352 1.02605 1.48274 1.63896 1.13221 1.07716 1.19252 0.96238 0.93596 0.78008 1.21425 0.96915 1.31875 1.06187 0.92485 1.24934 0.97825 0.94918 0.96431 1.69929 1.35698 1.33487 1.14297 0.86504 0.84733 0.77644 0.78580 1.20709 1.21105 1.19879 1.20065 0.78926 0.87164 0.84659 1.90641 1.44717 1.17839 1.86718 1.22078 1.00512 0.96029 0.90677 1.61585 1.52419 1.08837 1.01413 1.22693 0.92476 0.92218 1.01709 1.21893 1.03620 0.94621 0.79171 1.47686 1.53640 1.25727 1.08997 1.17996 0.79486 0.82460 0.79580 1.90979 1.45725 1.21135 1.84058 1.86817 1.45770 1.61086 1.32052 1.23252 0.86999 0.91221 0.99760 1.22262 1.05635 0.99181 0.93336 1.20921 0.96504 0.84247 0.94588 0.89275 1.22503 1.00406 0.96111 0.89047 0.93306 0.91953 0.92188 0.89880 0.91954 0.95114 0.93910 0.92724 0.88302 0.92464 0.86660 0.94967 0.89724 0.87916 0.86564 0.90508 0.89583 0.87608 0.89027 0.94261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.11 1.58 5.93 -4.04 -0.02 1.56 16 3 N -0.60 -11.92 2.46 -175.06 -0.43 -12.35 16 4 C 0.25 6.28 5.16 -5.19 -0.03 6.25 16 5 C -0.53 -14.57 9.39 -34.44 -0.32 -14.90 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -26.32 13.29 55.43 0.74 -25.59 16 9 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.51 9.81 7.33 -10.98 -0.08 9.73 16 14 O -0.52 -12.33 13.93 5.56 0.08 -12.26 16 15 C 0.04 0.52 4.00 -4.97 -0.02 0.50 16 16 N -0.52 -6.87 4.38 -235.82 -1.03 -7.90 16 17 C 0.04 0.52 5.24 -3.72 -0.02 0.50 16 18 C 0.13 1.70 6.50 -3.38 -0.02 1.68 16 19 N -0.61 -7.36 3.00 -171.94 -0.52 -7.88 16 20 C 0.65 9.07 8.31 53.76 0.45 9.52 16 21 O -0.53 -9.46 16.30 -19.38 -0.32 -9.77 16 22 O -0.35 -4.03 10.55 -39.65 -0.42 -4.45 16 23 C 0.06 0.39 7.13 37.14 0.26 0.65 16 24 C -0.17 -0.90 5.66 -27.16 -0.15 -1.05 16 25 C 0.14 1.25 3.17 -68.52 -0.22 1.03 16 26 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 27 C 0.05 0.45 4.83 -3.73 -0.02 0.43 16 28 H 0.05 0.58 7.22 -51.92 -0.38 0.21 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 32 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 33 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.10 1.16 7.24 -51.93 -0.38 0.78 16 37 H 0.06 0.68 7.17 -51.93 -0.37 0.31 16 38 H 0.12 1.93 5.78 -51.93 -0.30 1.63 16 39 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.10 1.43 6.82 -51.93 -0.35 1.07 16 42 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.09 0.46 7.89 -51.93 -0.41 0.05 16 45 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 46 H 0.09 0.67 8.00 -51.92 -0.42 0.26 16 47 H 0.04 0.36 8.06 -51.93 -0.42 -0.06 16 LS Contribution 372.55 15.07 5.61 5.61 Total: -1.00 -35.73 372.55 -8.72 -44.45 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -7.51 Total: -2.26 kcal Atomic # 6 Polarization: 15.70 SS G_CDS: 0.09 Total: 15.79 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -1.24 Total: -53.72 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.66 Total: -26.48 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.73 -8.72 -44.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494086886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.246 kcal (2) G-P(sol) polarization free energy of solvation -35.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds