Wall clock time and date at job start Fri Apr 10 2020 18:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47255 * 2 1 4 4 C 1.46502 * 120.00263 * 269.99842 * 3 2 1 5 5 C 1.50697 * 109.46955 * 270.00251 * 4 3 2 6 6 H 1.07999 * 120.00307 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99465 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00262 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99771 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47161 * 89.99862 * 9 7 5 11 11 H 1.48500 * 109.47014 * 210.00002 * 9 7 5 12 12 H 1.48504 * 109.47194 * 329.99723 * 9 7 5 13 13 C 1.34780 * 119.99975 * 89.99999 * 3 2 1 14 14 O 1.21273 * 120.00194 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99876 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46847 * 179.97438 * 15 13 3 17 17 C 1.46914 * 110.99753 * 65.89446 * 16 15 13 18 18 C 1.53180 * 109.31829 * 187.43834 * 17 16 15 19 19 N 1.47542 * 108.48131 * 305.78224 * 18 17 16 20 20 C 1.34108 * 118.65251 * 230.73132 * 19 18 17 21 21 O 1.21517 * 118.88980 * 359.40787 * 20 19 18 22 22 O 1.34362 * 122.22132 * 179.38850 * 20 19 18 23 23 C 1.45216 * 115.73761 * 25.17869 * 22 20 19 24 24 C 1.52975 * 108.34356 * 306.61423 * 23 22 20 25 25 C 1.46016 * 118.12238 * 50.85007 * 19 18 17 26 26 H 1.09003 * 107.92071 * 67.59615 * 25 19 18 27 27 C 1.46905 * 110.99680 * 189.99685 * 16 15 13 28 28 H 1.09010 * 109.46985 * 300.00245 * 1 2 3 29 29 H 1.09003 * 109.47050 * 59.99248 * 1 2 3 30 30 H 1.08994 * 109.47375 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46898 * 239.99975 * 2 1 3 32 32 H 1.09003 * 109.47167 * 119.99794 * 2 1 3 33 33 H 1.09001 * 109.46374 * 30.00093 * 4 3 2 34 34 H 1.09001 * 109.47324 * 149.99978 * 4 3 2 35 35 H 0.96997 * 120.00027 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.46822 * 60.00050 * 15 13 3 37 37 H 1.09000 * 109.46821 * 299.99695 * 15 13 3 38 38 H 1.09005 * 109.50029 * 307.38927 * 17 16 15 39 39 H 1.08994 * 109.50112 * 67.45568 * 17 16 15 40 40 H 1.09001 * 109.63427 * 65.47814 * 18 17 16 41 41 H 1.08999 * 109.63858 * 185.87715 * 18 17 16 42 42 H 1.08997 * 109.47904 * 186.97769 * 23 22 20 43 43 H 1.08996 * 109.78264 * 66.43015 * 23 22 20 44 44 H 1.09002 * 109.32478 * 297.92972 * 24 23 22 45 45 H 1.09002 * 109.32275 * 178.29422 * 24 23 22 46 46 H 1.09008 * 109.48772 * 53.43594 * 27 16 15 47 47 H 1.08994 * 109.50623 * 293.39020 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1491 2.3896 -2.8779 8 7 3.3488 3.1250 -3.6185 9 14 5.9131 2.0954 -3.4175 10 1 5.9759 0.8743 -4.2601 11 1 6.3923 3.2625 -4.2008 12 1 6.7735 1.9157 -2.2205 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9923 1.3059 2.4724 16 7 2.3110 2.2057 3.5889 17 6 1.3866 3.3470 3.6256 18 6 1.8623 4.3508 4.6804 19 7 2.0183 3.6411 5.9645 20 6 1.4379 4.1559 7.0584 21 8 0.8131 5.1933 6.9583 22 8 1.5235 3.5631 8.2611 23 6 2.6797 2.7076 8.4616 24 6 2.7306 1.6915 7.3193 25 6 2.8029 2.4097 5.9795 26 1 3.8418 2.6715 5.7790 27 6 2.3078 1.4808 4.8666 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5817 1.6877 -2.0283 34 1 2.0956 3.1411 -1.1384 35 1 3.6747 3.5148 -4.4447 36 1 2.6229 0.4186 2.5299 37 1 0.9444 1.0114 2.5303 38 1 1.3650 3.8293 2.6482 39 1 0.3864 2.9971 3.8808 40 1 2.8199 4.7744 4.3774 41 1 1.1263 5.1477 4.7859 42 1 2.5851 2.1861 9.4140 43 1 3.5885 3.3093 8.4597 44 1 1.8348 1.0712 7.3481 45 1 3.6108 1.0596 7.4376 46 1 2.9669 0.6155 4.7954 47 1 1.2950 1.1486 5.0941 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494086886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:48 Heat of formation + Delta-G solvation = -116.324035 kcal Electronic energy + Delta-G solvation = -28957.421058 eV Core-core repulsion = 24946.837797 eV Total energy + Delta-G solvation = -4010.583261 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.33262 -40.87869 -39.17597 -38.45903 -36.93367 -35.87561 -34.85954 -33.87160 -31.63614 -30.89052 -30.36915 -28.75744 -26.48808 -25.73641 -24.64489 -23.97334 -23.85597 -22.07180 -20.62384 -19.85369 -19.22015 -18.60226 -18.19150 -17.86172 -17.29854 -17.23139 -16.55627 -16.34950 -16.25809 -15.99764 -15.65387 -15.44320 -15.12202 -15.05165 -14.64325 -14.49166 -14.31662 -14.25669 -13.61969 -13.40734 -13.26243 -13.09406 -13.08821 -12.85426 -12.77376 -12.65053 -12.48870 -12.40924 -12.28999 -12.15677 -12.10524 -11.82096 -11.67650 -11.60680 -11.30607 -10.62314 -10.52265 -10.01818 -9.42258 -9.27954 -8.20164 -6.34826 1.34236 1.37497 1.40802 1.50916 1.53048 1.90823 2.22620 2.41585 2.48358 2.87095 3.09481 3.52186 3.56048 3.73544 3.77803 3.93633 4.06869 4.11229 4.15826 4.21939 4.26927 4.32709 4.40964 4.47443 4.50064 4.61171 4.65560 4.66733 4.75061 4.80486 4.89368 4.94890 5.01037 5.05980 5.07654 5.15922 5.24584 5.36126 5.39932 5.61125 5.79710 5.90694 6.01509 6.09607 6.60768 6.74129 6.87624 6.87972 7.31948 7.57977 8.86676 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018679 B = 0.002875 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.660675 B = 9736.922120 C =10084.863987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.265 3.735 5 C -0.538 4.538 6 H 0.055 0.945 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.967 3.033 10 H -0.263 1.263 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.494 3.506 14 O -0.578 6.578 15 C 0.054 3.946 16 N -0.538 5.538 17 C 0.048 3.952 18 C 0.134 3.866 19 N -0.608 5.608 20 C 0.651 3.349 21 O -0.586 6.586 22 O -0.359 6.359 23 C 0.051 3.949 24 C -0.155 4.155 25 C 0.132 3.868 26 H 0.090 0.910 27 C 0.050 3.950 28 H 0.057 0.943 29 H 0.034 0.966 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.018 0.982 34 H -0.006 1.006 35 H 0.266 0.734 36 H 0.132 0.868 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.150 0.850 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.145 0.855 46 H 0.125 0.875 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.834 -12.831 22.972 26.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.338 5.338 4 C 0.143 3.857 5 C -0.577 4.577 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.210 1.210 12 H -0.196 1.196 13 C 0.283 3.717 14 O -0.457 6.457 15 C -0.076 4.076 16 N -0.262 5.262 17 C -0.080 4.080 18 C 0.012 3.988 19 N -0.353 5.353 20 C 0.406 3.594 21 O -0.475 6.475 22 O -0.271 6.271 23 C -0.022 4.022 24 C -0.192 4.192 25 C 0.030 3.970 26 H 0.108 0.892 27 C -0.078 4.078 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.123 0.877 33 H 0.036 0.964 34 H 0.012 0.988 35 H 0.075 0.925 36 H 0.150 0.850 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.056 0.944 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.168 0.832 43 H 0.101 0.899 44 H 0.112 0.888 45 H 0.163 0.837 46 H 0.143 0.857 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.604 -11.485 22.940 25.704 hybrid contribution -0.020 0.300 -1.109 1.149 sum -1.624 -11.185 21.831 24.583 Atomic orbital electron populations 1.22156 0.94985 1.03396 1.01384 1.21735 0.94935 0.81429 1.04080 1.48292 1.64178 1.15145 1.06170 1.18634 0.95132 0.91389 0.80519 1.21721 0.97894 1.31735 1.06323 0.92666 1.25872 1.02344 0.94546 0.96562 1.70060 1.37814 1.34446 1.14785 0.85416 0.79110 0.78059 0.78232 1.18837 1.20973 1.19560 1.21211 0.77435 0.86784 0.86294 1.90621 1.47011 1.20443 1.87675 1.21988 1.02693 0.95786 0.87114 1.61514 1.52313 1.09175 1.03243 1.22414 0.93140 0.92748 0.99716 1.21646 1.02560 0.94521 0.80123 1.47701 1.53332 1.26586 1.07705 1.18090 0.78880 0.82038 0.80417 1.90934 1.47960 1.23602 1.85035 1.86793 1.47932 1.61831 1.30502 1.23758 0.85472 0.91070 1.01862 1.22293 1.07911 0.98705 0.90340 1.21299 0.95790 0.83076 0.96856 0.89221 1.22666 1.01875 0.96555 0.86680 0.92433 0.94635 0.88613 0.91092 0.87717 0.96418 0.98811 0.92538 0.85020 0.89880 0.90303 0.94383 0.90777 0.89421 0.83188 0.89871 0.88758 0.83712 0.85720 0.93263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 10.24 71.98 0.74 -2.95 16 2 C 0.10 2.79 5.93 86.38 0.51 3.30 16 3 N -0.61 -24.37 2.46 -826.15 -2.03 -26.40 16 4 C 0.26 14.11 5.16 85.63 0.44 14.55 16 5 C -0.54 -30.66 9.39 25.60 0.24 -30.42 16 6 H 0.06 3.09 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.31 5.46 84.65 0.46 0.77 16 8 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 9 Si 0.97 44.68 29.54 68.60 2.03 46.70 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 13 C 0.49 19.24 7.33 87.66 0.64 19.88 16 14 O -0.58 -28.67 13.93 -3.01 -0.04 -28.72 16 15 C 0.05 1.33 4.00 85.56 0.34 1.67 16 16 N -0.54 -13.20 4.38 -899.99 -3.94 -17.14 16 17 C 0.05 1.37 5.24 86.36 0.45 1.83 16 18 C 0.13 3.73 6.50 86.24 0.56 4.29 16 19 N -0.61 -14.15 3.00 -929.18 -2.78 -16.93 16 20 C 0.65 18.09 8.31 129.90 1.08 19.17 16 21 O -0.59 -21.70 16.30 19.87 0.32 -21.37 16 22 O -0.36 -7.84 10.55 -52.66 -0.56 -8.39 16 23 C 0.05 0.46 7.13 71.97 0.51 0.98 16 24 C -0.15 -0.94 5.66 30.32 0.17 -0.77 16 25 C 0.13 1.92 3.17 44.87 0.14 2.07 16 26 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 27 C 0.05 0.73 4.83 86.36 0.42 1.14 16 28 H 0.06 1.22 7.22 -2.38 -0.02 1.20 16 29 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 32 H 0.10 2.03 6.44 -2.39 -0.02 2.01 16 33 H 0.02 0.97 8.07 -2.39 -0.02 0.95 16 34 H -0.01 -0.39 7.42 -2.39 -0.02 -0.41 16 35 H 0.27 15.18 8.31 -92.71 -0.77 14.40 16 36 H 0.13 2.39 7.24 -2.39 -0.02 2.37 16 37 H 0.08 1.65 7.17 -2.39 -0.02 1.63 16 38 H 0.08 2.84 5.78 -2.38 -0.01 2.83 16 39 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.09 2.68 6.82 -2.39 -0.02 2.66 16 42 H 0.15 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.09 0.51 7.89 -2.39 -0.02 0.49 16 45 H 0.14 -0.15 8.14 -2.39 -0.02 -0.17 16 46 H 0.12 1.06 8.00 -2.38 -0.02 1.04 16 47 H 0.05 0.66 8.06 -2.39 -0.02 0.65 16 Total: -1.00 -85.71 372.55 0.96 -84.75 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 0.96 Total: 8.29 kcal Atomic # 6 Polarization: 28.79 SS G_CDS: 6.71 Total: 35.51 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -8.47 Total: -116.77 kcal Atomic # 8 Polarization: -58.21 SS G_CDS: -0.27 Total: -58.48 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -85.71 0.96 -84.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494086886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.573 kcal (2) G-P(sol) polarization free energy of solvation -85.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds