Wall clock time and date at job start Fri Apr 10 2020 18:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00160 * 2 1 4 4 C 1.50694 * 109.47115 * 270.00206 * 3 2 1 5 5 H 1.08000 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99902 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.34780 * 120.00033 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00111 * 180.02562 * 12 2 1 14 14 C 1.50707 * 120.00018 * 359.97438 * 12 2 1 15 15 C 1.52994 * 109.47057 * 180.02562 * 14 12 2 16 16 N 1.46903 * 109.46904 * 180.02562 * 15 14 12 17 17 C 1.46917 * 111.00139 * 294.10596 * 16 15 14 18 18 C 1.53175 * 109.30075 * 172.53360 * 17 16 15 19 19 N 1.47547 * 108.48765 * 54.24891 * 18 17 16 20 20 C 1.34093 * 118.64286 * 129.26312 * 19 18 17 21 21 O 1.21510 * 118.88816 * 0.71406 * 20 19 18 22 22 O 1.34368 * 122.22939 * 180.71969 * 20 19 18 23 23 C 1.45578 * 115.83650 * 334.81054 * 22 20 19 24 24 C 1.52975 * 108.16707 * 53.23429 * 23 22 20 25 25 C 1.46024 * 118.13067 * 309.15874 * 19 18 17 26 26 H 1.09001 * 107.93493 * 292.31815 * 25 19 18 27 27 C 1.46908 * 111.00055 * 169.99944 * 16 15 14 28 28 H 1.08996 * 109.47419 * 90.00053 * 1 2 3 29 29 H 1.09004 * 109.47352 * 209.99756 * 1 2 3 30 30 H 1.08995 * 109.47003 * 329.99670 * 1 2 3 31 31 H 1.09007 * 109.47078 * 149.99845 * 3 2 1 32 32 H 1.09003 * 109.46733 * 30.00568 * 3 2 1 33 33 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47158 * 300.00755 * 14 12 2 35 35 H 1.09008 * 109.46644 * 60.00137 * 14 12 2 36 36 H 1.09003 * 109.47146 * 299.99841 * 15 14 12 37 37 H 1.08995 * 109.47090 * 60.00460 * 15 14 12 38 38 H 1.09003 * 109.49769 * 292.48222 * 17 16 15 39 39 H 1.09005 * 109.50012 * 52.58334 * 17 16 15 40 40 H 1.08998 * 109.63606 * 294.55090 * 18 17 16 41 41 H 1.09002 * 109.63591 * 173.94787 * 18 17 16 42 42 H 1.09005 * 109.72325 * 293.56669 * 23 22 20 43 43 H 1.09000 * 109.76048 * 172.92925 * 23 22 20 44 44 H 1.08991 * 109.32093 * 181.72118 * 24 23 22 45 45 H 1.09004 * 109.31898 * 62.27325 * 24 23 22 46 46 H 1.09000 * 109.47843 * 306.56871 * 27 16 15 47 47 H 1.08996 * 109.48100 * 66.59254 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.5543 3.6175 -0.6730 8 14 3.4388 3.4163 -3.4339 9 1 4.7337 2.8587 -3.9002 10 1 2.3435 2.9195 -4.3049 11 1 3.4871 4.8992 -3.4965 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3853 -2.4724 -0.0005 15 6 2.3796 -3.6353 -0.0005 16 7 1.6450 -4.9075 -0.0011 17 6 0.8962 -5.0837 1.2505 18 6 0.0024 -6.3224 1.1356 19 7 0.8437 -7.4725 0.7528 20 6 0.7554 -8.6010 1.4716 21 8 -0.0223 -8.6435 2.4043 22 8 1.4978 -9.6864 1.1956 23 6 1.9542 -9.8094 -0.1813 24 6 2.6676 -8.5118 -0.5650 25 6 1.7322 -7.3233 -0.3964 26 1 1.1137 -7.2357 -1.2897 27 6 2.5516 -6.0387 -0.2393 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 3.1499 1.1383 0.5139 32 1 1.6084 2.0283 0.5139 33 1 4.0318 4.4430 -0.8503 34 1 0.7589 -2.5303 0.8896 35 1 0.7583 -2.5299 -0.8904 36 1 3.0062 -3.5775 -0.8905 37 1 3.0061 -3.5775 0.8895 38 1 1.5947 -5.2144 2.0771 39 1 0.2780 -4.2044 1.4316 40 1 -0.7586 -6.1555 0.3734 41 1 -0.4740 -6.5206 2.0958 42 1 1.0997 -9.9679 -0.8393 43 1 2.6449 -10.6483 -0.2670 44 1 2.9909 -8.5718 -1.6042 45 1 3.5403 -8.3775 0.0741 46 1 3.1249 -5.8597 -1.1489 47 1 3.2327 -6.1427 0.6052 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494676206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:04 Heat of formation + Delta-G solvation = -95.532738 kcal Electronic energy + Delta-G solvation = -28157.857646 eV Core-core repulsion = 24148.175964 eV Total energy + Delta-G solvation = -4009.681683 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56359 -39.34248 -38.50756 -37.62718 -35.60351 -34.79782 -33.21587 -32.67237 -31.18722 -30.18197 -28.10244 -26.99989 -25.72332 -25.08126 -23.71638 -23.24192 -22.16541 -20.84519 -19.99405 -18.59840 -18.29569 -17.38942 -16.59750 -16.58937 -16.47227 -15.92508 -15.53369 -15.37741 -15.20459 -14.87822 -14.80718 -14.46617 -14.35881 -14.08983 -13.87502 -13.31918 -12.83655 -12.64437 -12.48009 -12.28417 -12.17114 -12.12018 -11.99698 -11.88438 -11.66922 -11.50187 -11.40010 -11.21506 -11.00816 -10.90777 -10.84199 -10.59297 -10.47404 -10.17136 -9.65263 -9.28509 -8.94480 -8.60105 -8.45259 -7.66919 -6.06174 -4.10842 2.10772 2.34742 3.07110 3.29494 3.33001 3.35712 3.39136 3.42923 3.97531 4.02612 4.12414 4.31289 4.41410 4.43977 4.58938 4.73663 4.76380 4.83261 4.93057 5.00915 5.13694 5.14809 5.21871 5.26239 5.29097 5.32648 5.43778 5.46557 5.55393 5.65456 5.76259 5.78492 5.93060 5.97548 6.01910 6.08881 6.18162 6.72695 6.74350 7.02884 7.33492 7.41216 7.51843 7.73288 7.89986 8.21526 8.38810 8.87925 9.06331 9.54153 11.01973 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.027309 B = 0.002256 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.068143 B =12409.817642 C =12985.459814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 C 0.504 3.496 13 O -0.546 6.546 14 C -0.135 4.135 15 C 0.073 3.927 16 N -0.539 5.539 17 C 0.033 3.967 18 C 0.126 3.874 19 N -0.615 5.615 20 C 0.653 3.347 21 O -0.534 6.534 22 O -0.345 6.345 23 C 0.063 3.937 24 C -0.168 4.168 25 C 0.142 3.858 26 H 0.088 0.912 27 C 0.048 3.952 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.032 0.968 33 H 0.263 0.737 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.045 0.955 38 H 0.042 0.958 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.077 0.923 43 H 0.118 0.882 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.094 0.906 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.451 -24.336 -0.368 25.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 C 0.291 3.709 13 O -0.424 6.424 14 C -0.176 4.176 15 C -0.054 4.054 16 N -0.263 5.263 17 C -0.095 4.095 18 C 0.004 3.996 19 N -0.362 5.362 20 C 0.407 3.593 21 O -0.419 6.419 22 O -0.257 6.257 23 C -0.011 4.011 24 C -0.206 4.206 25 C 0.038 3.962 26 H 0.106 0.894 27 C -0.081 4.081 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.122 0.878 42 H 0.095 0.905 43 H 0.136 0.864 44 H 0.125 0.875 45 H 0.105 0.895 46 H 0.113 0.887 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.356 -24.383 -0.097 25.198 hybrid contribution 0.819 0.617 -0.622 1.199 sum -5.537 -23.766 -0.718 24.413 Atomic orbital electron populations 1.21623 0.81366 1.01613 1.01223 1.48161 1.06233 1.07909 1.71201 1.19304 0.92555 0.78084 0.97524 1.21421 1.36425 1.06259 0.92295 0.92500 1.24950 0.95395 0.96398 0.97464 1.69935 1.38365 1.14414 1.30730 0.86491 0.78739 0.77563 0.84577 1.20561 1.19923 1.21133 1.20260 0.88046 0.85135 0.77509 1.90669 1.13992 1.87362 1.50421 1.21657 0.99229 0.92650 1.04048 1.21816 0.94617 0.86228 1.02733 1.61984 1.27650 1.02219 1.34462 1.22606 0.97546 0.98472 0.90897 1.21891 0.92374 0.82467 1.02850 1.47629 1.43435 1.13255 1.31838 1.17985 0.79430 0.79543 0.82374 1.90976 1.36494 1.83017 1.31442 1.86875 1.66260 1.41487 1.31079 1.23325 0.99626 0.98713 0.79454 1.22270 0.99535 0.93583 1.05237 1.20949 0.91567 0.94721 0.88939 0.89363 1.22478 0.93836 0.89522 1.02283 0.93152 0.92562 0.91452 0.93912 0.95030 0.92713 0.89724 0.88577 0.89529 0.93707 0.93989 0.88551 0.90071 0.87837 0.90472 0.86410 0.87506 0.89458 0.88737 0.93960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.30 10.28 59.85 0.62 1.92 16 2 N -0.60 -12.46 2.86 -182.96 -0.52 -12.99 16 3 C 0.24 6.35 5.20 -5.20 -0.03 6.33 16 4 C -0.53 -14.82 9.39 -34.44 -0.32 -15.15 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.50 9.98 7.67 -10.98 -0.08 9.90 16 13 O -0.55 -13.25 15.56 5.56 0.09 -13.17 16 14 C -0.14 -1.81 4.19 -27.88 -0.12 -1.93 16 15 C 0.07 0.92 4.25 -3.83 -0.02 0.91 16 16 N -0.54 -5.29 4.64 -234.38 -1.09 -6.38 16 17 C 0.03 0.31 5.45 -3.72 -0.02 0.29 16 18 C 0.13 1.12 6.51 -3.38 -0.02 1.10 16 19 N -0.62 -5.79 3.00 -171.94 -0.52 -6.30 16 20 C 0.65 7.82 8.31 53.75 0.45 8.27 16 21 O -0.53 -8.33 16.30 -19.37 -0.32 -8.65 16 22 O -0.35 -3.58 10.55 -39.66 -0.42 -4.00 16 23 C 0.06 0.32 7.16 37.14 0.27 0.59 16 24 C -0.17 -0.74 5.64 -27.16 -0.15 -0.90 16 25 C 0.14 0.98 3.18 -68.51 -0.22 0.76 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 C 0.05 0.39 4.82 -3.73 -0.02 0.37 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.64 6.44 -51.93 -0.33 0.31 16 30 H 0.07 0.99 7.89 -51.93 -0.41 0.58 16 31 H 0.04 1.25 7.42 -51.92 -0.39 0.87 16 32 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.08 0.95 5.66 -51.93 -0.29 0.65 16 35 H 0.10 1.19 8.11 -51.92 -0.42 0.77 16 36 H 0.09 1.19 7.94 -51.93 -0.41 0.77 16 37 H 0.04 0.63 8.08 -51.93 -0.42 0.21 16 38 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.80 6.16 -51.93 -0.32 0.48 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 1.01 6.81 -51.93 -0.35 0.66 16 42 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.11 0.21 8.14 -51.93 -0.42 -0.22 16 45 H 0.09 0.43 7.88 -51.93 -0.41 0.02 16 46 H 0.09 0.68 8.00 -51.93 -0.42 0.26 16 47 H 0.04 0.38 8.06 -51.93 -0.42 -0.04 16 LS Contribution 374.04 15.07 5.64 5.64 Total: -1.00 -36.58 374.04 -8.70 -45.27 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -7.51 Total: -4.37 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: 0.23 Total: 14.06 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -1.39 Total: -51.49 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.65 Total: -25.81 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.58 -8.70 -45.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494676206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.259 kcal (2) G-P(sol) polarization free energy of solvation -36.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds