Wall clock time and date at job start Fri Apr 10 2020 18:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47369 * 2 1 4 4 C 1.42899 * 114.00201 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46913 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.46976 * 180.02562 * 5 4 3 7 7 C 1.34262 * 125.75794 * 124.99904 * 6 5 4 8 8 C 1.38044 * 107.42081 * 180.02562 * 7 6 5 9 9 C 1.47426 * 126.41654 * 180.02562 * 8 7 6 10 10 O 1.21607 * 119.99616 * 327.82111 * 9 8 7 11 11 N 1.34770 * 120.00155 * 147.82330 * 9 8 7 12 12 C 1.46501 * 120.00141 * 183.99600 * 11 9 8 13 13 C 1.50699 * 109.47144 * 89.99698 * 12 11 9 14 14 H 1.08002 * 120.00138 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99994 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99443 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 119.99893 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47060 * 90.00067 * 17 15 13 19 19 H 1.48495 * 109.47381 * 209.99862 * 17 15 13 20 20 H 1.48499 * 109.47548 * 330.00320 * 17 15 13 21 21 C 1.46503 * 119.99998 * 3.99213 * 11 9 8 22 22 C 1.53004 * 109.46902 * 95.40715 * 21 11 9 23 23 O 1.42898 * 109.47459 * 66.71561 * 22 21 11 24 24 C 1.42897 * 113.99981 * 180.02562 * 23 22 21 25 25 C 1.41297 * 107.16713 * 0.02562 * 8 7 6 26 26 N 1.30450 * 108.02232 * 359.71865 * 25 8 7 27 27 H 1.08997 * 109.47102 * 59.99790 * 1 2 3 28 28 H 1.08999 * 109.47488 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46962 * 299.99846 * 1 2 3 30 30 H 1.08997 * 109.47141 * 239.99482 * 2 1 3 31 31 H 1.09004 * 109.47073 * 119.99814 * 2 1 3 32 32 H 1.09000 * 109.46543 * 59.99799 * 4 3 2 33 33 H 1.08998 * 109.47100 * 300.00143 * 4 3 2 34 34 H 1.08998 * 109.47581 * 300.00126 * 5 4 3 35 35 H 1.09000 * 109.47453 * 60.00634 * 5 4 3 36 36 H 1.08002 * 126.28978 * 0.02562 * 7 6 5 37 37 H 1.08996 * 109.47187 * 210.00088 * 12 11 9 38 38 H 1.08997 * 109.47184 * 330.00013 * 12 11 9 39 39 H 0.97004 * 119.99177 * 180.02562 * 16 15 13 40 40 H 1.09006 * 109.47162 * 215.40293 * 21 11 9 41 41 H 1.09000 * 109.47127 * 335.40433 * 21 11 9 42 42 H 1.08997 * 109.47269 * 186.71958 * 22 21 11 43 43 H 1.09004 * 109.46867 * 306.71785 * 22 21 11 44 44 H 1.09008 * 109.46855 * 180.02562 * 24 23 22 45 45 H 1.08995 * 109.47206 * 300.00018 * 24 23 22 46 46 H 1.08998 * 109.46926 * 60.00472 * 24 23 22 47 47 H 1.08005 * 125.98469 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 -0.0001 6 7 5.2858 3.0540 -0.0001 7 6 6.0186 3.7385 -0.8929 8 6 7.3446 3.5933 -0.5374 9 6 8.5063 4.1747 -1.2344 10 8 8.4757 4.3324 -2.4398 11 7 9.6021 4.5315 -0.5357 12 6 10.7215 5.1893 -1.2143 13 6 10.5222 6.6827 -1.1799 14 1 9.6493 7.1001 -0.7001 15 6 11.4544 7.5162 -1.7609 16 7 11.2806 8.8194 -1.7304 17 14 12.9645 6.7943 -2.5900 18 1 12.6677 6.5374 -4.0222 19 1 14.0938 7.7526 -2.4828 20 1 13.3327 5.5189 -1.9244 21 6 9.6739 4.2616 0.9024 22 6 10.4120 2.9421 1.1374 23 8 11.7790 3.0847 0.7462 24 6 12.5612 1.9023 0.9255 25 6 7.3798 2.7831 0.6196 26 7 6.1520 2.4734 0.9330 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8340 0.9763 -0.8892 33 1 3.8333 0.9766 0.8908 34 1 3.4230 3.4214 -0.8905 35 1 3.4223 3.4224 0.8894 36 1 5.6402 4.2995 -1.7346 37 1 11.6529 4.9353 -0.7085 38 1 10.7670 4.8527 -2.2500 39 1 11.9362 9.4057 -2.1394 40 1 10.2102 5.0710 1.3977 41 1 8.6653 4.1913 1.3097 42 1 10.3619 2.6810 2.1944 43 1 9.9451 2.1543 0.5461 44 1 13.5859 2.0927 0.6061 45 1 12.5558 1.6193 1.9781 46 1 12.1388 1.0934 0.3295 47 1 8.2675 2.4781 1.1540 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598687397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:00 Heat of formation + Delta-G solvation = -30.504120 kcal Electronic energy + Delta-G solvation = -27812.258709 eV Core-core repulsion = 23805.396879 eV Total energy + Delta-G solvation = -4006.861830 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.41882 -38.89380 -38.45106 -37.50586 -34.94386 -34.22658 -32.53277 -31.70741 -30.34089 -29.99920 -28.76656 -27.37095 -26.07222 -24.01625 -23.26148 -23.02450 -22.65586 -21.19221 -20.72951 -18.76326 -17.54740 -16.89576 -16.86430 -16.74969 -16.47182 -15.80255 -15.61304 -15.31201 -15.18306 -14.83112 -14.57561 -14.21265 -14.16911 -13.99197 -13.54876 -13.15663 -12.87133 -12.72458 -12.66639 -12.35388 -12.27098 -12.01494 -11.83115 -11.66583 -11.60975 -11.56678 -11.45516 -10.96533 -10.90663 -10.77096 -10.33022 -10.07663 -10.02215 -9.56615 -9.50856 -9.42651 -9.04616 -8.54517 -8.45714 -7.58820 -5.97167 -3.94138 1.66081 2.10260 2.36276 3.29832 3.40068 3.45624 3.50649 3.70112 3.98045 4.02819 4.30129 4.48410 4.52328 4.59958 4.75035 4.79149 4.84641 4.87366 4.93371 5.11699 5.17866 5.21455 5.24084 5.32937 5.36489 5.40946 5.43544 5.45841 5.49856 5.54797 5.57034 5.66064 5.67358 5.77973 5.83709 6.26925 6.39450 6.64659 6.80774 7.05233 7.15025 7.34577 7.47293 7.52768 7.76538 8.38721 8.59451 9.03940 9.10220 9.64492 11.16317 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.002709 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.926257 B =10332.452524 C =11461.317116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.389 6.389 4 C 0.053 3.947 5 C 0.137 3.863 6 N -0.366 5.366 7 C 0.120 3.880 8 C -0.272 4.272 9 C 0.583 3.417 10 O -0.545 6.545 11 N -0.578 5.578 12 C 0.218 3.782 13 C -0.524 4.524 14 H 0.073 0.927 15 C 0.071 3.929 16 N -0.902 5.902 17 Si 0.874 3.126 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.261 1.261 21 C 0.101 3.899 22 C 0.037 3.963 23 O -0.371 6.371 24 C 0.030 3.970 25 C 0.067 3.933 26 N -0.302 5.302 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.187 0.813 37 H 0.047 0.953 38 H 0.033 0.967 39 H 0.263 0.737 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.083 0.917 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.554 -19.312 7.995 25.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.308 6.308 4 C -0.024 4.024 5 C 0.015 3.985 6 N -0.148 5.148 7 C -0.029 4.029 8 C -0.286 4.286 9 C 0.370 3.630 10 O -0.423 6.423 11 N -0.307 5.307 12 C 0.098 3.902 13 C -0.563 4.563 14 H 0.091 0.909 15 C -0.131 4.131 16 N -0.541 5.541 17 Si 0.701 3.299 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.185 1.185 21 C -0.024 4.024 22 C -0.041 4.041 23 O -0.289 6.289 24 C -0.067 4.067 25 C -0.120 4.120 26 N -0.122 5.122 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.126 0.874 35 H 0.115 0.885 36 H 0.204 0.796 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.102 0.898 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -15.428 -19.355 8.042 26.025 hybrid contribution 1.449 -0.278 -0.826 1.691 sum -13.979 -19.633 7.216 25.158 Atomic orbital electron populations 1.21754 0.93428 1.02428 1.03286 1.22489 0.95677 0.83105 1.00408 1.87785 1.20125 1.27254 1.95614 1.22603 0.81691 0.96107 1.02012 1.21423 0.74358 0.97075 1.05599 1.48213 1.06310 1.39212 1.21021 1.22938 0.90722 0.94954 0.94298 1.20570 0.94170 1.11606 1.02298 1.17194 0.81585 0.77917 0.86319 1.90741 1.81593 1.56067 1.13919 1.47632 1.17878 1.57712 1.07508 1.19727 0.84346 0.92810 0.93334 1.21380 1.08857 0.89084 1.36967 0.90897 1.24827 0.97978 0.94671 0.95591 1.69909 1.36162 1.02584 1.45409 0.86867 0.82893 0.79522 0.80640 1.20123 1.21316 1.18543 1.21818 1.00396 0.96381 0.83782 1.23254 0.83622 0.98942 0.98304 1.88088 1.20293 1.34296 1.86270 1.22725 0.96367 0.88207 0.99358 1.24504 0.95709 0.96564 0.95239 1.77077 1.00263 1.21268 1.13619 0.91715 0.90933 0.91722 0.93192 0.93126 0.92617 0.91562 0.87404 0.88501 0.79555 0.93502 0.94858 0.92765 0.88836 0.88743 0.92591 0.93239 0.89828 0.94459 0.94453 0.79021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 37.16 0.38 -0.44 16 2 C 0.06 0.41 6.66 37.16 0.25 0.65 16 3 O -0.39 -3.47 10.34 -35.23 -0.36 -3.84 16 4 C 0.05 0.47 6.12 37.16 0.23 0.69 16 5 C 0.14 1.21 6.86 -4.04 -0.03 1.18 16 6 N -0.37 -4.46 3.65 -60.81 -0.22 -4.68 16 7 C 0.12 1.68 11.38 -16.56 -0.19 1.49 16 8 C -0.27 -4.50 5.53 -105.06 -0.58 -5.08 16 9 C 0.58 12.44 7.60 -12.52 -0.10 12.34 16 10 O -0.54 -13.78 16.59 5.27 0.09 -13.69 16 11 N -0.58 -12.33 2.45 -176.33 -0.43 -12.76 16 12 C 0.22 5.55 4.11 -5.19 -0.02 5.53 16 13 C -0.52 -15.43 9.94 -34.44 -0.34 -15.77 16 14 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 15 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 16 N -0.90 -28.36 13.96 55.43 0.77 -27.58 16 17 Si 0.87 22.31 27.47 -169.99 -4.67 17.64 16 18 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 21 C 0.10 1.66 5.35 -4.04 -0.02 1.63 16 22 C 0.04 0.50 4.93 37.16 0.18 0.68 16 23 O -0.37 -6.05 9.12 -35.23 -0.32 -6.37 16 24 C 0.03 0.36 11.01 101.05 1.11 1.47 16 25 C 0.07 0.92 9.42 -16.98 -0.16 0.76 16 26 N -0.30 -4.06 12.34 30.86 0.38 -3.68 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.11 0.75 8.06 -51.93 -0.42 0.33 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.19 2.26 8.06 -52.49 -0.42 1.84 16 37 H 0.05 1.18 5.73 -51.93 -0.30 0.88 16 38 H 0.03 0.91 6.80 -51.93 -0.35 0.56 16 39 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 40 H 0.09 1.64 8.11 -51.93 -0.42 1.22 16 41 H 0.09 1.34 4.74 -51.93 -0.25 1.09 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.64 6.98 -51.93 -0.36 0.28 16 44 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 45 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.19 2.23 4.11 -52.48 -0.22 2.01 16 LS Contribution 387.98 15.07 5.85 5.85 Total: -1.00 -37.40 387.98 -5.70 -43.10 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -7.40 Total: -1.16 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 0.62 Total: 7.17 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.50 Total: -48.70 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.60 Total: -23.90 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.40 -5.70 -43.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598687397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.597 kcal (2) G-P(sol) polarization free energy of solvation -37.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds