Wall clock time and date at job start Fri Apr 10 2020 18:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47369 * 2 1 4 4 C 1.42899 * 114.00201 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46913 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.46976 * 180.02562 * 5 4 3 7 7 C 1.34262 * 125.75794 * 124.99904 * 6 5 4 8 8 C 1.38044 * 107.42081 * 180.02562 * 7 6 5 9 9 C 1.47426 * 126.41654 * 180.02562 * 8 7 6 10 10 O 1.21607 * 119.99616 * 327.82111 * 9 8 7 11 11 N 1.34770 * 120.00155 * 147.82330 * 9 8 7 12 12 C 1.46501 * 120.00141 * 183.99600 * 11 9 8 13 13 C 1.50699 * 109.47144 * 89.99698 * 12 11 9 14 14 H 1.08002 * 120.00138 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99994 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99443 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 119.99893 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47060 * 90.00067 * 17 15 13 19 19 H 1.48495 * 109.47381 * 209.99862 * 17 15 13 20 20 H 1.48499 * 109.47548 * 330.00320 * 17 15 13 21 21 C 1.46503 * 119.99998 * 3.99213 * 11 9 8 22 22 C 1.53004 * 109.46902 * 95.40715 * 21 11 9 23 23 O 1.42898 * 109.47459 * 66.71561 * 22 21 11 24 24 C 1.42897 * 113.99981 * 180.02562 * 23 22 21 25 25 C 1.41297 * 107.16713 * 0.02562 * 8 7 6 26 26 N 1.30450 * 108.02232 * 359.71865 * 25 8 7 27 27 H 1.08997 * 109.47102 * 59.99790 * 1 2 3 28 28 H 1.08999 * 109.47488 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46962 * 299.99846 * 1 2 3 30 30 H 1.08997 * 109.47141 * 239.99482 * 2 1 3 31 31 H 1.09004 * 109.47073 * 119.99814 * 2 1 3 32 32 H 1.09000 * 109.46543 * 59.99799 * 4 3 2 33 33 H 1.08998 * 109.47100 * 300.00143 * 4 3 2 34 34 H 1.08998 * 109.47581 * 300.00126 * 5 4 3 35 35 H 1.09000 * 109.47453 * 60.00634 * 5 4 3 36 36 H 1.08002 * 126.28978 * 0.02562 * 7 6 5 37 37 H 1.08996 * 109.47187 * 210.00088 * 12 11 9 38 38 H 1.08997 * 109.47184 * 330.00013 * 12 11 9 39 39 H 0.97004 * 119.99177 * 180.02562 * 16 15 13 40 40 H 1.09006 * 109.47162 * 215.40293 * 21 11 9 41 41 H 1.09000 * 109.47127 * 335.40433 * 21 11 9 42 42 H 1.08997 * 109.47269 * 186.71958 * 22 21 11 43 43 H 1.09004 * 109.46867 * 306.71785 * 22 21 11 44 44 H 1.09008 * 109.46855 * 180.02562 * 24 23 22 45 45 H 1.08995 * 109.47206 * 300.00018 * 24 23 22 46 46 H 1.08998 * 109.46926 * 60.00472 * 24 23 22 47 47 H 1.08005 * 125.98469 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 -0.0001 6 7 5.2858 3.0540 -0.0001 7 6 6.0186 3.7385 -0.8929 8 6 7.3446 3.5933 -0.5374 9 6 8.5063 4.1747 -1.2344 10 8 8.4757 4.3324 -2.4398 11 7 9.6021 4.5315 -0.5357 12 6 10.7215 5.1893 -1.2143 13 6 10.5222 6.6827 -1.1799 14 1 9.6493 7.1001 -0.7001 15 6 11.4544 7.5162 -1.7609 16 7 11.2806 8.8194 -1.7304 17 14 12.9645 6.7943 -2.5900 18 1 12.6677 6.5374 -4.0222 19 1 14.0938 7.7526 -2.4828 20 1 13.3327 5.5189 -1.9244 21 6 9.6739 4.2616 0.9024 22 6 10.4120 2.9421 1.1374 23 8 11.7790 3.0847 0.7462 24 6 12.5612 1.9023 0.9255 25 6 7.3798 2.7831 0.6196 26 7 6.1520 2.4734 0.9330 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8340 0.9763 -0.8892 33 1 3.8333 0.9766 0.8908 34 1 3.4230 3.4214 -0.8905 35 1 3.4223 3.4224 0.8894 36 1 5.6402 4.2995 -1.7346 37 1 11.6529 4.9353 -0.7085 38 1 10.7670 4.8527 -2.2500 39 1 11.9362 9.4057 -2.1394 40 1 10.2102 5.0710 1.3977 41 1 8.6653 4.1913 1.3097 42 1 10.3619 2.6810 2.1944 43 1 9.9451 2.1543 0.5461 44 1 13.5859 2.0927 0.6061 45 1 12.5558 1.6193 1.9781 46 1 12.1388 1.0934 0.3295 47 1 8.2675 2.4781 1.1540 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598687397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:59 Heat of formation + Delta-G solvation = -58.090981 kcal Electronic energy + Delta-G solvation = -27813.454965 eV Core-core repulsion = 23805.396879 eV Total energy + Delta-G solvation = -4008.058086 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.54796 -40.36334 -39.14297 -38.73550 -36.56076 -35.24875 -34.59913 -32.39352 -31.71781 -31.30050 -29.82963 -28.98984 -27.10482 -25.24972 -24.37230 -24.01633 -23.73252 -22.66375 -21.75364 -20.18038 -19.07086 -18.58917 -17.83098 -17.72743 -17.38142 -17.02386 -16.88337 -16.49731 -16.36645 -16.10021 -15.79677 -15.47438 -15.31092 -15.02722 -14.74554 -14.74091 -14.29365 -13.96541 -13.62474 -13.36532 -13.31022 -13.23298 -13.08940 -12.97596 -12.76170 -12.60472 -12.43925 -12.30890 -12.15575 -11.99032 -11.94935 -11.91934 -11.69337 -10.79202 -10.74752 -10.69323 -10.60136 -10.51115 -9.77732 -9.31738 -8.29519 -6.32534 0.53054 1.13972 1.18125 1.35672 1.38401 1.49812 2.17325 2.35689 2.52306 2.63685 2.93776 3.06079 3.44031 3.78678 3.82250 3.83954 3.92315 4.12812 4.15421 4.20096 4.23903 4.28352 4.34275 4.40274 4.46654 4.49353 4.58192 4.59281 4.62299 4.65848 4.67382 4.85504 4.90848 4.97322 5.01487 5.04101 5.07919 5.26108 5.32892 5.52023 5.68426 5.75672 6.08192 6.29559 6.34510 6.44036 6.67609 6.77209 7.26471 7.45607 8.87296 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.002709 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.926257 B =10332.452524 C =11461.317116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.401 6.401 4 C 0.061 3.939 5 C 0.130 3.870 6 N -0.354 5.354 7 C 0.130 3.870 8 C -0.304 4.304 9 C 0.578 3.422 10 O -0.599 6.599 11 N -0.586 5.586 12 C 0.234 3.766 13 C -0.531 4.531 14 H 0.030 0.970 15 C 0.012 3.988 16 N -0.945 5.945 17 Si 0.944 3.056 18 H -0.275 1.275 19 H -0.274 1.274 20 H -0.242 1.242 21 C 0.096 3.904 22 C 0.040 3.960 23 O -0.413 6.413 24 C 0.025 3.975 25 C 0.077 3.923 26 N -0.304 5.304 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.202 0.798 37 H 0.055 0.945 38 H 0.012 0.988 39 H 0.267 0.733 40 H 0.076 0.924 41 H 0.118 0.882 42 H 0.099 0.901 43 H 0.059 0.941 44 H 0.084 0.916 45 H 0.062 0.938 46 H 0.045 0.955 47 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.932 -21.837 9.178 28.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.320 6.320 4 C -0.017 4.017 5 C 0.010 3.990 6 N -0.134 5.134 7 C -0.021 4.021 8 C -0.319 4.319 9 C 0.368 3.632 10 O -0.481 6.481 11 N -0.314 5.314 12 C 0.112 3.888 13 C -0.570 4.570 14 H 0.048 0.952 15 C -0.186 4.186 16 N -0.586 5.586 17 Si 0.767 3.233 18 H -0.201 1.201 19 H -0.199 1.199 20 H -0.165 1.165 21 C -0.027 4.027 22 C -0.037 4.037 23 O -0.332 6.332 24 C -0.071 4.071 25 C -0.109 4.109 26 N -0.124 5.124 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.147 0.853 35 H 0.126 0.874 36 H 0.218 0.782 37 H 0.073 0.927 38 H 0.031 0.969 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.136 0.864 42 H 0.117 0.883 43 H 0.077 0.923 44 H 0.102 0.898 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -15.841 -21.923 9.299 28.601 hybrid contribution 1.389 0.515 -1.137 1.867 sum -14.452 -21.409 8.162 27.089 Atomic orbital electron populations 1.21772 0.92483 1.03512 1.02926 1.22694 0.96500 0.82266 1.00998 1.87768 1.19962 1.28632 1.95676 1.22469 0.81846 0.95698 1.01675 1.21742 0.72242 0.97733 1.07246 1.48434 1.07384 1.37746 1.19861 1.23148 0.90257 0.94267 0.94430 1.20222 0.93306 1.14170 1.04156 1.17829 0.82380 0.77101 0.85913 1.90691 1.82592 1.58539 1.16275 1.47667 1.17026 1.57234 1.09511 1.19275 0.86357 0.90350 0.92836 1.21591 1.07410 0.91508 1.36458 0.95188 1.25780 1.01601 0.94984 0.96238 1.70049 1.37727 1.04148 1.46642 0.85764 0.78710 0.79650 0.79201 1.20111 1.19949 1.16489 1.22104 1.02165 0.97732 0.80665 1.23257 0.82511 0.96919 1.00974 1.88008 1.21510 1.36684 1.87009 1.22900 0.95876 0.87051 1.01226 1.24694 0.96563 0.95562 0.94110 1.77075 1.00123 1.21309 1.13882 0.92093 0.89171 0.92029 0.92649 0.92497 0.92804 0.92058 0.85302 0.87423 0.78156 0.92666 0.96943 0.92385 0.90558 0.86442 0.88300 0.92325 0.89752 0.91916 0.93628 0.76998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.28 71.98 0.74 -0.63 16 2 C 0.05 0.61 6.66 71.98 0.48 1.09 16 3 O -0.40 -6.43 10.34 -148.98 -1.54 -7.97 16 4 C 0.06 0.93 6.12 71.98 0.44 1.37 16 5 C 0.13 1.99 6.86 86.38 0.59 2.59 16 6 N -0.35 -7.87 3.65 -346.30 -1.26 -9.14 16 7 C 0.13 3.50 11.38 84.28 0.96 4.46 16 8 C -0.30 -9.87 5.53 -20.15 -0.11 -9.98 16 9 C 0.58 25.19 7.60 86.66 0.66 25.85 16 10 O -0.60 -31.45 16.59 -4.05 -0.07 -31.52 16 11 N -0.59 -25.42 2.45 -830.03 -2.03 -27.46 16 12 C 0.23 12.18 4.11 85.63 0.35 12.53 16 13 C -0.53 -32.52 9.94 25.60 0.25 -32.26 16 14 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 15 C 0.01 0.71 5.47 84.66 0.46 1.18 16 16 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 17 Si 0.94 46.67 27.47 68.60 1.88 48.55 16 18 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 19 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.24 -11.10 6.54 99.48 0.65 -10.44 16 21 C 0.10 3.09 5.35 86.38 0.46 3.55 16 22 C 0.04 1.01 4.93 71.98 0.35 1.36 16 23 O -0.41 -12.70 9.12 -148.98 -1.36 -14.06 16 24 C 0.03 0.54 11.01 113.37 1.25 1.79 16 25 C 0.08 1.98 9.42 85.65 0.81 2.79 16 26 N -0.30 -7.43 12.34 -56.27 -0.69 -8.12 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.13 1.46 8.06 -2.39 -0.02 1.44 16 35 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.20 4.69 8.06 -2.91 -0.02 4.67 16 37 H 0.06 2.78 5.73 -2.39 -0.01 2.77 16 38 H 0.01 0.70 6.80 -2.39 -0.02 0.68 16 39 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 40 H 0.08 2.70 8.11 -2.38 -0.02 2.68 16 41 H 0.12 3.17 4.74 -2.39 -0.01 3.16 16 42 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.06 1.36 6.98 -2.39 -0.02 1.34 16 44 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 45 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.21 4.30 4.11 -2.91 -0.01 4.28 16 Total: -1.00 -84.68 387.98 3.83 -80.85 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.91 Total: 14.09 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 7.70 Total: 15.68 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -3.69 Total: -105.63 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -2.97 Total: -53.55 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.88 Total: 48.55 kcal Total: -84.68 3.83 -80.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598687397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.762 kcal (2) G-P(sol) polarization free energy of solvation -84.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds