Wall clock time and date at job start Fri Apr 10 2020 18:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.46873 * 2 1 4 4 C 1.46504 * 120.00214 * 265.43291 * 3 2 1 5 5 C 1.50696 * 109.46899 * 270.00039 * 4 3 2 6 6 H 1.07995 * 120.00283 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99772 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99874 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99797 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47476 * 89.99676 * 9 7 5 11 11 H 1.48507 * 109.46902 * 209.99454 * 9 7 5 12 12 H 1.48495 * 109.47231 * 329.99040 * 9 7 5 13 13 C 1.34778 * 119.99967 * 85.43552 * 3 2 1 14 14 O 1.21287 * 120.00016 * 185.03018 * 13 3 2 15 15 C 1.50700 * 120.00414 * 5.03174 * 13 3 2 16 16 H 1.09004 * 110.41065 * 333.06058 * 15 13 3 17 17 C 1.55120 * 110.34460 * 95.50157 * 15 13 3 18 18 C 1.55155 * 101.48742 * 156.06205 * 17 15 13 19 19 C 1.54323 * 102.94141 * 324.33805 * 18 17 15 20 20 N 1.47016 * 107.27507 * 22.18987 * 19 18 17 21 21 C 1.34778 * 125.65426 * 181.02540 * 20 19 18 22 22 O 1.21276 * 120.00260 * 175.52305 * 21 20 19 23 23 C 1.50696 * 119.99499 * 355.52548 * 21 20 19 24 24 N 1.46510 * 109.46799 * 179.97438 * 23 21 20 25 25 C 1.34773 * 119.99749 * 180.02562 * 24 23 21 26 26 C 1.50703 * 119.99970 * 180.02562 * 25 24 23 27 27 O 1.21282 * 120.00469 * 359.97438 * 25 24 23 28 28 H 1.08999 * 109.46847 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47615 * 299.99868 * 1 2 3 30 30 H 1.08997 * 109.47040 * 60.00191 * 1 2 3 31 31 H 1.08999 * 109.47205 * 239.99795 * 2 1 3 32 32 H 1.08997 * 109.47040 * 119.99809 * 2 1 3 33 33 H 1.08998 * 109.46769 * 30.00092 * 4 3 2 34 34 H 1.08996 * 109.47101 * 150.00014 * 4 3 2 35 35 H 0.96998 * 119.99840 * 180.02562 * 8 7 5 36 36 H 1.09007 * 111.19443 * 37.96423 * 17 15 13 37 37 H 1.09000 * 110.94412 * 274.05857 * 17 15 13 38 38 H 1.08997 * 110.72488 * 205.97154 * 18 17 15 39 39 H 1.08999 * 110.87428 * 82.76840 * 18 17 15 40 40 H 1.09003 * 109.88234 * 262.76863 * 19 18 17 41 41 H 1.08999 * 109.88493 * 141.61109 * 19 18 17 42 42 H 1.08992 * 109.47586 * 299.99715 * 23 21 20 43 43 H 1.09006 * 109.47097 * 60.00279 * 23 21 20 44 44 H 0.96998 * 119.99703 * 0.02562 * 24 23 21 45 45 H 1.08999 * 109.47087 * 59.99817 * 26 25 24 46 46 H 1.08996 * 109.47309 * 179.97438 * 26 25 24 47 47 H 1.08995 * 109.47206 * 300.00070 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3577 2.0382 -1.2647 5 6 3.8093 1.7914 -1.5852 6 1 4.4181 1.2036 -0.9142 7 6 4.3600 2.3152 -2.7356 8 7 5.6268 2.0994 -3.0155 9 14 3.3068 3.3313 -3.8965 10 1 3.3797 4.7623 -3.5067 11 1 3.8057 3.1708 -5.2860 12 1 1.8980 2.8684 -3.8199 13 6 2.1553 2.0475 1.1635 14 8 2.4716 3.2184 1.1582 15 6 1.9155 1.3378 2.4711 16 1 1.2178 0.5118 2.3329 17 6 3.2556 0.8242 3.0597 18 6 2.9130 0.7275 4.5698 19 6 1.9717 1.9307 4.7884 20 7 1.4001 2.2812 3.4801 21 6 0.5426 3.2936 3.2431 22 8 0.1969 3.5424 2.1076 23 6 0.0134 4.1165 4.3893 24 7 -0.8924 5.1463 3.8738 25 6 -1.4882 6.0062 4.7234 26 6 -2.4204 7.0650 4.1933 27 8 -1.2749 5.9275 5.9147 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.7354 1.6334 -2.0628 34 1 2.1824 3.1103 -1.1757 35 1 6.0143 2.4682 -3.8247 36 1 4.0612 1.5380 2.8869 37 1 3.5099 -0.1547 2.6533 38 1 3.8130 0.8267 5.1767 39 1 2.4006 -0.2084 4.7927 40 1 2.5355 2.7752 5.1849 41 1 1.1747 1.6571 5.4799 42 1 -0.5266 3.4707 5.0815 43 1 0.8450 4.5920 4.9095 44 1 -1.0632 5.2090 2.9211 45 1 -3.2521 6.5896 3.6735 46 1 -2.8030 7.6603 5.0222 47 1 -1.8805 7.7107 3.5007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611213524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:09 Heat of formation + Delta-G solvation = -95.017856 kcal Electronic energy + Delta-G solvation = -29156.607180 eV Core-core repulsion = 25146.947825 eV Total energy + Delta-G solvation = -4009.659356 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 7.36 seconds Orbital eigenvalues (eV) -40.72648 -39.68775 -38.43402 -37.22298 -35.29474 -34.53162 -32.73843 -32.00652 -30.62306 -30.38656 -29.72390 -27.49085 -27.09066 -24.02718 -22.94756 -22.47735 -21.39048 -20.74884 -19.91046 -18.33722 -17.41270 -17.30378 -16.87233 -16.53208 -16.22817 -16.01684 -15.40207 -15.21379 -14.80180 -14.50878 -14.37410 -13.81741 -13.61109 -13.54992 -13.45097 -13.17880 -12.99404 -12.79386 -12.68216 -12.54909 -12.37249 -12.24205 -12.14238 -11.81015 -11.57270 -11.50441 -11.38236 -10.95076 -10.90380 -10.71686 -10.44919 -10.17316 -10.13759 -9.85848 -9.52290 -9.36422 -9.15015 -8.57574 -8.53163 -7.62859 -6.08132 -4.06256 2.41463 2.49437 2.62463 3.15593 3.31114 3.37144 3.40339 3.46866 3.83985 4.23924 4.40526 4.41685 4.60700 4.66619 4.76558 4.98802 5.03465 5.07492 5.09387 5.15859 5.18541 5.23231 5.26441 5.30545 5.43589 5.56989 5.57127 5.60270 5.69324 5.70250 5.80256 5.94762 6.06460 6.09339 6.16242 6.16973 6.44274 6.76451 7.04499 7.30205 7.37988 7.42553 7.64029 7.98914 8.09097 8.32108 8.49203 8.93771 9.07106 9.53370 11.05162 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012124 B = 0.003844 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.926445 B = 7282.712764 C = 8466.436258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.591 5.591 4 C 0.219 3.781 5 C -0.528 4.528 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.518 3.482 14 O -0.521 6.521 15 C 0.114 3.886 16 H 0.094 0.906 17 C -0.120 4.120 18 C -0.128 4.128 19 C 0.098 3.902 20 N -0.603 5.603 21 C 0.523 3.477 22 O -0.507 6.507 23 C 0.108 3.892 24 N -0.718 5.718 25 C 0.514 3.486 26 C -0.173 4.173 27 O -0.553 6.553 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.028 0.972 34 H 0.037 0.963 35 H 0.264 0.736 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.414 0.586 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.237 -2.752 16.304 21.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.324 5.324 4 C 0.099 3.901 5 C -0.566 4.566 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.190 1.190 13 C 0.303 3.697 14 O -0.395 6.395 15 C 0.007 3.993 16 H 0.112 0.888 17 C -0.159 4.159 18 C -0.166 4.166 19 C -0.024 4.024 20 N -0.339 5.339 21 C 0.310 3.690 22 O -0.381 6.381 23 C -0.019 4.019 24 N -0.374 5.374 25 C 0.301 3.699 26 C -0.232 4.232 27 O -0.431 6.431 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.253 0.747 45 H 0.108 0.892 46 H 0.112 0.888 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.025 -1.911 16.345 20.987 hybrid contribution -0.359 0.400 -1.172 1.290 sum -13.384 -1.511 15.172 20.288 Atomic orbital electron populations 1.22249 0.96807 1.01306 1.02428 1.21439 0.93345 0.84099 1.02885 1.47800 1.64163 1.13114 1.07303 1.19606 0.96429 0.94028 0.80056 1.21351 0.93779 1.33994 1.07486 0.90803 1.24840 0.94858 0.95687 0.97587 1.69893 1.12069 1.45586 1.26187 0.86854 0.81105 0.81520 0.80267 1.19953 1.21105 1.19043 1.19882 0.78147 0.87114 0.84536 1.90656 1.46582 1.15711 1.86590 1.22107 0.96780 0.91530 0.88867 0.88835 1.22774 0.95710 1.02919 0.94491 1.22632 0.99638 0.97669 0.96689 1.22118 0.97041 0.98469 0.84820 1.48126 1.45589 1.30952 1.09236 1.20037 0.78916 0.79790 0.90285 1.90784 1.57925 1.66803 1.22608 1.20971 0.95182 0.90987 0.94785 1.45830 1.46700 1.32665 1.12192 1.20823 0.80756 0.82042 0.86279 1.21895 0.99415 0.97979 1.03928 1.90713 1.63598 1.72765 1.16068 0.92083 0.93057 0.92182 0.89547 0.91791 0.95452 0.94544 0.92609 0.89362 0.88940 0.89423 0.90170 0.90907 0.90879 0.88619 0.88560 0.74747 0.89231 0.88848 0.89100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.02 37.16 0.37 -1.92 16 2 C 0.11 1.68 5.74 -4.04 -0.02 1.66 16 3 N -0.59 -12.48 2.46 -175.06 -0.43 -12.91 16 4 C 0.22 5.54 4.25 -5.19 -0.02 5.52 16 5 C -0.53 -15.22 9.94 -34.44 -0.34 -15.57 16 6 H 0.07 2.30 8.06 -52.49 -0.42 1.87 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 9 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 10 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 13 C 0.52 10.86 5.48 -10.98 -0.06 10.80 16 14 O -0.52 -13.31 14.44 -16.59 -0.24 -13.55 16 15 C 0.11 1.69 2.73 -67.45 -0.18 1.51 16 16 H 0.09 1.21 5.50 -51.93 -0.29 0.93 16 17 C -0.12 -1.46 6.49 -24.47 -0.16 -1.62 16 18 C -0.13 -1.02 6.95 -24.90 -0.17 -1.20 16 19 C 0.10 0.89 6.49 -3.07 -0.02 0.87 16 20 N -0.60 -8.17 3.12 -164.22 -0.51 -8.69 16 21 C 0.52 7.88 7.36 -10.99 -0.08 7.80 16 22 O -0.51 -9.72 13.36 -16.58 -0.22 -9.94 16 23 C 0.11 1.28 5.35 -5.19 -0.03 1.26 16 24 N -0.72 -8.47 5.53 -61.47 -0.34 -8.80 16 25 C 0.51 5.95 7.94 -10.99 -0.09 5.86 16 26 C -0.17 -1.28 10.32 36.01 0.37 -0.91 16 27 O -0.55 -8.32 17.09 5.56 0.09 -8.23 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.71 7.39 -51.93 -0.38 0.33 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 1.40 8.04 -51.93 -0.42 0.98 16 32 H 0.06 0.82 6.51 -51.93 -0.34 0.49 16 33 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 34 H 0.04 1.01 6.79 -51.93 -0.35 0.66 16 35 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.09 1.30 8.06 -51.92 -0.42 0.88 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.41 4.90 7.44 -40.82 -0.30 4.59 16 45 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 0.65 8.12 -51.93 -0.42 0.23 16 47 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 383.61 15.07 5.78 5.78 Total: -1.00 -39.42 383.61 -7.83 -47.25 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -7.53 Total: 2.58 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: -0.53 Total: 16.10 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.51 Total: -57.39 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.37 Total: -31.72 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.42 -7.83 -47.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611213524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.766 kcal (2) G-P(sol) polarization free energy of solvation -39.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.36 seconds