Wall clock time and date at job start Fri Apr 10 2020 18:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.46873 * 2 1 4 4 C 1.46504 * 120.00214 * 265.43291 * 3 2 1 5 5 C 1.50696 * 109.46899 * 270.00039 * 4 3 2 6 6 H 1.07995 * 120.00283 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99772 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99874 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99797 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47476 * 89.99676 * 9 7 5 11 11 H 1.48507 * 109.46902 * 209.99454 * 9 7 5 12 12 H 1.48495 * 109.47231 * 329.99040 * 9 7 5 13 13 C 1.34778 * 119.99967 * 85.43552 * 3 2 1 14 14 O 1.21287 * 120.00016 * 185.03018 * 13 3 2 15 15 C 1.50700 * 120.00414 * 5.03174 * 13 3 2 16 16 H 1.09004 * 110.41065 * 333.06058 * 15 13 3 17 17 C 1.55120 * 110.34460 * 95.50157 * 15 13 3 18 18 C 1.55155 * 101.48742 * 156.06205 * 17 15 13 19 19 C 1.54323 * 102.94141 * 324.33805 * 18 17 15 20 20 N 1.47016 * 107.27507 * 22.18987 * 19 18 17 21 21 C 1.34778 * 125.65426 * 181.02540 * 20 19 18 22 22 O 1.21276 * 120.00260 * 175.52305 * 21 20 19 23 23 C 1.50696 * 119.99499 * 355.52548 * 21 20 19 24 24 N 1.46510 * 109.46799 * 179.97438 * 23 21 20 25 25 C 1.34773 * 119.99749 * 180.02562 * 24 23 21 26 26 C 1.50703 * 119.99970 * 180.02562 * 25 24 23 27 27 O 1.21282 * 120.00469 * 359.97438 * 25 24 23 28 28 H 1.08999 * 109.46847 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47615 * 299.99868 * 1 2 3 30 30 H 1.08997 * 109.47040 * 60.00191 * 1 2 3 31 31 H 1.08999 * 109.47205 * 239.99795 * 2 1 3 32 32 H 1.08997 * 109.47040 * 119.99809 * 2 1 3 33 33 H 1.08998 * 109.46769 * 30.00092 * 4 3 2 34 34 H 1.08996 * 109.47101 * 150.00014 * 4 3 2 35 35 H 0.96998 * 119.99840 * 180.02562 * 8 7 5 36 36 H 1.09007 * 111.19443 * 37.96423 * 17 15 13 37 37 H 1.09000 * 110.94412 * 274.05857 * 17 15 13 38 38 H 1.08997 * 110.72488 * 205.97154 * 18 17 15 39 39 H 1.08999 * 110.87428 * 82.76840 * 18 17 15 40 40 H 1.09003 * 109.88234 * 262.76863 * 19 18 17 41 41 H 1.08999 * 109.88493 * 141.61109 * 19 18 17 42 42 H 1.08992 * 109.47586 * 299.99715 * 23 21 20 43 43 H 1.09006 * 109.47097 * 60.00279 * 23 21 20 44 44 H 0.96998 * 119.99703 * 0.02562 * 24 23 21 45 45 H 1.08999 * 109.47087 * 59.99817 * 26 25 24 46 46 H 1.08996 * 109.47309 * 179.97438 * 26 25 24 47 47 H 1.08995 * 109.47206 * 300.00070 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3577 2.0382 -1.2647 5 6 3.8093 1.7914 -1.5852 6 1 4.4181 1.2036 -0.9142 7 6 4.3600 2.3152 -2.7356 8 7 5.6268 2.0994 -3.0155 9 14 3.3068 3.3313 -3.8965 10 1 3.3797 4.7623 -3.5067 11 1 3.8057 3.1708 -5.2860 12 1 1.8980 2.8684 -3.8199 13 6 2.1553 2.0475 1.1635 14 8 2.4716 3.2184 1.1582 15 6 1.9155 1.3378 2.4711 16 1 1.2178 0.5118 2.3329 17 6 3.2556 0.8242 3.0597 18 6 2.9130 0.7275 4.5698 19 6 1.9717 1.9307 4.7884 20 7 1.4001 2.2812 3.4801 21 6 0.5426 3.2936 3.2431 22 8 0.1969 3.5424 2.1076 23 6 0.0134 4.1165 4.3893 24 7 -0.8924 5.1463 3.8738 25 6 -1.4882 6.0062 4.7234 26 6 -2.4204 7.0650 4.1933 27 8 -1.2749 5.9275 5.9147 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.7354 1.6334 -2.0628 34 1 2.1824 3.1103 -1.1757 35 1 6.0143 2.4682 -3.8247 36 1 4.0612 1.5380 2.8869 37 1 3.5099 -0.1547 2.6533 38 1 3.8130 0.8267 5.1767 39 1 2.4006 -0.2084 4.7927 40 1 2.5355 2.7752 5.1849 41 1 1.1747 1.6571 5.4799 42 1 -0.5266 3.4707 5.0815 43 1 0.8450 4.5920 4.9095 44 1 -1.0632 5.2090 2.9211 45 1 -3.2521 6.5896 3.6735 46 1 -2.8030 7.6603 5.0222 47 1 -1.8805 7.7107 3.5007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611213524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:08 Heat of formation + Delta-G solvation = -124.887585 kcal Electronic energy + Delta-G solvation = -29157.902429 eV Core-core repulsion = 25146.947825 eV Total energy + Delta-G solvation = -4010.954604 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.90709 -40.75075 -39.79223 -38.33711 -36.95133 -35.53867 -34.89569 -33.02932 -32.07674 -31.33296 -30.81232 -29.21035 -28.01883 -25.34706 -24.39886 -23.91287 -22.35759 -21.68436 -21.16156 -19.61026 -19.12560 -18.63344 -18.42778 -17.65148 -17.25719 -17.13088 -16.78635 -16.33468 -16.18587 -15.99223 -15.66104 -15.18142 -14.84641 -14.68664 -14.50621 -14.44826 -14.21207 -14.11541 -13.85084 -13.72204 -13.46200 -13.37779 -13.32221 -13.14398 -12.97340 -12.71668 -12.54292 -12.46079 -12.27502 -12.07494 -11.95981 -11.76570 -11.71692 -11.13152 -11.05647 -10.86511 -10.66394 -10.31444 -9.73298 -9.36407 -8.37637 -6.41425 1.27308 1.31509 1.38869 1.40341 1.52984 1.57089 1.90994 2.24077 2.27099 2.43110 2.96474 3.24248 3.54279 3.62756 3.74628 3.88004 3.97019 4.11219 4.13913 4.23401 4.24268 4.34804 4.43320 4.51749 4.55553 4.62596 4.70073 4.74773 4.81976 4.84383 4.88487 4.92790 4.95553 5.01046 5.06716 5.17557 5.20268 5.30378 5.32522 5.43964 5.66371 6.22272 6.34091 6.40983 6.58891 6.72561 6.98556 7.09866 7.20049 7.47881 8.78843 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012124 B = 0.003844 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.926445 B = 7282.712764 C = 8466.436258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.097 3.903 3 N -0.602 5.602 4 C 0.231 3.769 5 C -0.532 4.532 6 H 0.036 0.964 7 C 0.016 3.984 8 N -0.941 5.941 9 Si 0.941 3.059 10 H -0.281 1.281 11 H -0.269 1.269 12 H -0.246 1.246 13 C 0.506 3.494 14 O -0.580 6.580 15 C 0.118 3.882 16 H 0.122 0.878 17 C -0.123 4.123 18 C -0.111 4.111 19 C 0.088 3.912 20 N -0.605 5.605 21 C 0.515 3.485 22 O -0.557 6.557 23 C 0.116 3.884 24 N -0.720 5.720 25 C 0.511 3.489 26 C -0.166 4.166 27 O -0.591 6.591 28 H 0.100 0.900 29 H 0.047 0.953 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.041 0.959 34 H 0.006 0.994 35 H 0.269 0.731 36 H 0.050 0.950 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.119 0.881 43 H 0.098 0.902 44 H 0.414 0.586 45 H 0.110 0.890 46 H 0.099 0.901 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.408 -4.224 17.812 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.025 4.025 3 N -0.334 5.334 4 C 0.109 3.891 5 C -0.571 4.571 6 H 0.054 0.946 7 C -0.182 4.182 8 N -0.581 5.581 9 Si 0.765 3.235 10 H -0.207 1.207 11 H -0.194 1.194 12 H -0.169 1.169 13 C 0.294 3.706 14 O -0.459 6.459 15 C 0.011 3.989 16 H 0.139 0.861 17 C -0.162 4.162 18 C -0.149 4.149 19 C -0.033 4.033 20 N -0.340 5.340 21 C 0.303 3.697 22 O -0.435 6.435 23 C -0.012 4.012 24 N -0.375 5.375 25 C 0.300 3.700 26 C -0.225 4.225 27 O -0.472 6.472 28 H 0.119 0.881 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.059 0.941 34 H 0.024 0.976 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.131 0.869 40 H 0.093 0.907 41 H 0.127 0.873 42 H 0.137 0.863 43 H 0.116 0.884 44 H 0.252 0.748 45 H 0.128 0.872 46 H 0.118 0.882 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.205 -3.455 17.889 23.730 hybrid contribution 0.414 0.810 -1.601 1.841 sum -14.790 -2.645 16.288 22.160 Atomic orbital electron populations 1.22155 0.94589 1.03508 1.01377 1.21801 0.95079 0.81302 1.04297 1.47952 1.64168 1.15126 1.06127 1.19175 0.94306 0.92850 0.82797 1.21532 0.95376 1.33293 1.06854 0.94571 1.25737 0.96157 0.96848 0.99502 1.70021 1.13916 1.46953 1.27179 0.85811 0.80357 0.79009 0.78358 1.20652 1.19397 1.16904 1.21028 0.76440 0.86754 0.86356 1.90608 1.49141 1.18508 1.87682 1.22185 0.99029 0.91677 0.85965 0.86110 1.22819 0.93002 1.02431 0.97937 1.22681 1.00460 0.98604 0.93143 1.22512 0.98436 0.99202 0.83137 1.48339 1.44781 1.30304 1.10572 1.20604 0.78729 0.79986 0.90344 1.90755 1.59850 1.68255 1.24633 1.20982 0.95520 0.90985 0.93667 1.45954 1.46553 1.32758 1.12269 1.21531 0.80578 0.82179 0.85689 1.21931 0.99177 0.96971 1.04453 1.90690 1.65066 1.73867 1.17609 0.88116 0.93354 0.94003 0.90202 0.88375 0.94089 0.97622 0.92206 0.93083 0.87245 0.87575 0.86894 0.90750 0.87273 0.86330 0.88363 0.74802 0.87159 0.88233 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 10.02 71.98 0.72 -3.20 16 2 C 0.10 2.95 5.74 86.38 0.50 3.44 16 3 N -0.60 -25.88 2.46 -826.17 -2.04 -27.92 16 4 C 0.23 12.04 4.25 85.63 0.36 12.40 16 5 C -0.53 -31.97 9.94 25.60 0.25 -31.71 16 6 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 7 C 0.02 0.97 5.47 84.66 0.46 1.43 16 8 N -0.94 -59.84 13.96 21.45 0.30 -59.54 16 9 Si 0.94 46.32 27.47 68.60 1.88 48.21 16 10 H -0.28 -14.05 7.11 99.48 0.71 -13.35 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 13 C 0.51 21.79 5.48 87.66 0.48 22.27 16 14 O -0.58 -31.32 14.44 18.11 0.26 -31.06 16 15 C 0.12 3.38 2.73 44.79 0.12 3.50 16 16 H 0.12 2.78 5.50 -2.38 -0.01 2.76 16 17 C -0.12 -2.81 6.49 32.06 0.21 -2.61 16 18 C -0.11 -1.35 6.95 31.78 0.22 -1.13 16 19 C 0.09 1.32 6.49 86.73 0.56 1.89 16 20 N -0.60 -15.62 3.12 -791.87 -2.47 -18.08 16 21 C 0.51 15.40 7.36 87.66 0.65 16.05 16 22 O -0.56 -21.93 13.36 18.15 0.24 -21.69 16 23 C 0.12 2.64 5.35 85.63 0.46 3.10 16 24 N -0.72 -16.64 5.53 -466.77 -2.58 -19.22 16 25 C 0.51 11.38 7.94 87.66 0.70 12.08 16 26 C -0.17 -2.20 10.32 71.24 0.74 -1.47 16 27 O -0.59 -17.37 17.09 -3.04 -0.05 -17.42 16 28 H 0.10 1.71 8.14 -2.39 -0.02 1.70 16 29 H 0.05 1.23 7.39 -2.39 -0.02 1.22 16 30 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 2.52 8.04 -2.39 -0.02 2.50 16 32 H 0.10 2.27 6.51 -2.39 -0.02 2.25 16 33 H 0.04 2.00 7.13 -2.39 -0.02 1.98 16 34 H 0.01 0.33 6.79 -2.39 -0.02 0.31 16 35 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 36 H 0.05 1.54 8.06 -2.38 -0.02 1.53 16 37 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 44 H 0.41 9.83 7.44 -92.71 -0.69 9.14 16 45 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.10 1.22 8.12 -2.39 -0.02 1.20 16 47 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -93.11 383.61 2.21 -90.90 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.23 Total: 19.78 kcal Atomic # 6 Polarization: 29.61 SS G_CDS: 6.43 Total: 36.04 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -6.79 Total: -124.75 kcal Atomic # 8 Polarization: -70.63 SS G_CDS: 0.45 Total: -70.18 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.88 Total: 48.21 kcal Total: -93.11 2.21 -90.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611213524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.988 kcal (2) G-P(sol) polarization free energy of solvation -93.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds