Wall clock time and date at job start Fri Apr 10 2020 18:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47251 * 2 1 4 4 C 1.34731 * 117.00240 * 184.92091 * 3 2 1 5 5 O 1.21487 * 119.99639 * 5.06915 * 4 3 2 6 6 C 1.47578 * 120.00146 * 185.06439 * 4 3 2 7 7 N 1.31863 * 126.52576 * 355.58072 * 6 4 3 8 8 N 1.28465 * 110.06223 * 179.97438 * 7 6 4 9 9 C 1.46500 * 124.87645 * 179.97438 * 8 7 6 10 10 C 1.35047 * 110.24038 * 0.26450 * 8 7 6 11 11 C 1.35343 * 107.24185 * 359.56983 * 10 8 7 12 12 C 1.50703 * 127.24772 * 180.15201 * 11 10 8 13 13 N 1.46903 * 109.46911 * 258.05562 * 12 11 10 14 14 C 1.46905 * 110.99960 * 189.10255 * 13 12 11 15 15 C 1.50695 * 109.46818 * 75.70612 * 14 13 12 16 16 H 1.07999 * 120.00469 * 3.97530 * 15 14 13 17 17 C 1.37885 * 120.00017 * 183.97213 * 15 14 13 18 18 N 1.31510 * 120.00126 * 184.99448 * 17 15 14 19 19 Si 1.86800 * 119.99558 * 4.98473 * 17 15 14 20 20 H 1.48504 * 109.46911 * 94.89418 * 19 17 15 21 21 H 1.48500 * 109.47266 * 214.89472 * 19 17 15 22 22 H 1.48499 * 109.47633 * 334.89768 * 19 17 15 23 23 C 1.46896 * 111.00461 * 65.14526 * 13 12 11 24 24 C 1.53001 * 109.47626 * 189.99923 * 23 13 12 25 25 O 1.42897 * 109.46576 * 65.00092 * 24 23 13 26 26 C 1.42907 * 113.99646 * 180.02562 * 25 24 23 27 27 H 1.09000 * 109.47622 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47352 * 300.00905 * 1 2 3 29 29 H 1.09009 * 109.47202 * 60.00293 * 1 2 3 30 30 H 1.08997 * 109.47108 * 239.99559 * 2 1 3 31 31 H 1.09001 * 109.47049 * 119.99412 * 2 1 3 32 32 H 1.09000 * 109.46947 * 90.02613 * 9 8 7 33 33 H 1.09002 * 109.46998 * 210.02553 * 9 8 7 34 34 H 1.09001 * 109.47338 * 330.02359 * 9 8 7 35 35 H 1.08003 * 126.37137 * 179.70249 * 10 8 7 36 36 H 1.09003 * 109.46957 * 18.04860 * 12 11 10 37 37 H 1.08996 * 109.47069 * 138.05513 * 12 11 10 38 38 H 1.08989 * 109.47118 * 195.70943 * 14 13 12 39 39 H 1.09000 * 109.46738 * 315.71175 * 14 13 12 40 40 H 0.97003 * 119.99802 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.47370 * 310.00723 * 23 13 12 42 42 H 1.09002 * 109.46939 * 70.00110 * 23 13 12 43 43 H 1.08995 * 109.47126 * 185.00588 * 24 23 13 44 44 H 1.09000 * 109.46937 * 305.00674 * 24 23 13 45 45 H 1.08997 * 109.47004 * 299.99650 * 26 25 24 46 46 H 1.08991 * 109.47406 * 59.99951 * 26 25 24 47 47 H 1.09000 * 109.47150 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3455 1.5470 -0.1030 5 8 4.0739 0.5915 -0.2828 6 6 3.9191 2.9026 0.0026 7 7 3.2481 4.0322 0.1149 8 7 4.0623 5.0234 0.1843 9 6 3.6639 6.4272 0.3142 10 6 5.3380 4.5860 0.1138 11 6 5.2943 3.2378 0.0033 12 6 6.4635 2.2929 -0.1032 13 7 6.6300 1.8757 -1.5018 14 6 7.6170 0.7934 -1.6143 15 6 7.0000 -0.4996 -1.1471 16 1 5.9588 -0.5292 -0.8620 17 6 7.7649 -1.6451 -1.0837 18 7 7.2049 -2.7932 -0.7708 19 14 9.5964 -1.5662 -1.4424 20 1 10.3445 -1.4185 -0.1681 21 1 10.0216 -2.8151 -2.1241 22 1 9.8793 -0.4023 -2.3201 23 6 6.9998 3.0158 -2.3510 24 6 6.9211 2.6029 -3.8221 25 8 5.5656 2.3034 -4.1608 26 6 5.3809 1.9040 -5.5204 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.5864 6.6867 1.3701 33 1 4.4107 7.0624 -0.1622 34 1 2.6982 6.5771 -0.1685 35 1 6.2274 5.1980 0.1427 36 1 7.3691 2.7958 0.2362 37 1 6.2800 1.4164 0.5181 38 1 7.9287 0.6926 -2.6539 39 1 8.4839 1.0266 -0.9961 40 1 7.7431 -3.5990 -0.7258 41 1 6.3134 3.8427 -2.1684 42 1 8.0169 3.3293 -2.1156 43 1 7.2803 3.4195 -4.4484 44 1 7.5399 1.7206 -3.9854 45 1 5.7080 2.7059 -6.1822 46 1 5.9676 1.0071 -5.7186 47 1 4.3259 1.6949 -5.6976 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613735096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:27 Heat of formation + Delta-G solvation = -25.767613 kcal Electronic energy + Delta-G solvation = -29374.712248 eV Core-core repulsion = 25368.055808 eV Total energy + Delta-G solvation = -4006.656440 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 4.86 seconds Orbital eigenvalues (eV) -42.45912 -39.43224 -37.83489 -36.32827 -35.75079 -33.43898 -32.30064 -31.48924 -30.98393 -29.49577 -28.00699 -27.12267 -25.93388 -24.57114 -23.38654 -22.25844 -21.96099 -20.54263 -20.13084 -19.28259 -17.37110 -16.68596 -16.52530 -16.33041 -15.94734 -15.76330 -15.55405 -15.48544 -14.74565 -14.36560 -14.05633 -13.75682 -13.54735 -13.42772 -13.23797 -12.89478 -12.87417 -12.73392 -12.41355 -12.19438 -12.09669 -11.73724 -11.60130 -11.52069 -11.23161 -11.19934 -11.01332 -10.63784 -10.50360 -10.36137 -10.04826 -9.98932 -9.78713 -9.67010 -9.15974 -9.00154 -8.93097 -8.53138 -8.33245 -7.10405 -5.80174 -3.73195 1.81800 2.31563 2.51514 3.22109 3.37675 3.45950 3.46457 3.74810 4.31281 4.43119 4.59710 4.87317 4.91544 4.96480 5.06225 5.17427 5.24748 5.29747 5.44431 5.46961 5.51250 5.55860 5.62637 5.66270 5.74315 5.79152 5.82753 5.91527 5.98569 6.02329 6.05739 6.08798 6.16844 6.34741 6.41993 6.48599 6.73352 6.90194 6.96460 7.01523 7.12669 7.69359 7.87227 8.04371 8.13101 8.23079 8.53635 8.94317 9.58337 9.84435 11.33474 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.008934 B = 0.005150 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.364669 B = 5435.739700 C = 6532.758103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.062 3.938 3 O -0.359 6.359 4 C 0.532 3.468 5 O -0.433 6.433 6 C 0.028 3.972 7 N -0.249 5.249 8 N -0.288 5.288 9 C 0.091 3.909 10 C -0.031 4.031 11 C -0.115 4.115 12 C 0.136 3.864 13 N -0.500 5.500 14 C 0.163 3.837 15 C -0.495 4.495 16 H 0.108 0.892 17 C 0.064 3.936 18 N -0.902 5.902 19 Si 0.864 3.136 20 H -0.281 1.281 21 H -0.289 1.289 22 H -0.271 1.271 23 C 0.053 3.947 24 C 0.067 3.933 25 O -0.366 6.366 26 C 0.033 3.967 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.178 0.822 36 H 0.026 0.974 37 H 0.104 0.896 38 H 0.025 0.975 39 H -0.019 1.019 40 H 0.258 0.742 41 H 0.070 0.930 42 H 0.033 0.967 43 H 0.036 0.964 44 H 0.055 0.945 45 H 0.028 0.972 46 H 0.039 0.961 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.281 18.019 -0.235 19.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.012 4.012 3 O -0.277 6.277 4 C 0.371 3.629 5 O -0.312 6.312 6 C -0.130 4.130 7 N -0.086 5.086 8 N -0.077 5.077 9 C -0.049 4.049 10 C -0.173 4.173 11 C -0.125 4.125 12 C 0.007 3.993 13 N -0.224 5.224 14 C 0.038 3.962 15 C -0.533 4.533 16 H 0.126 0.874 17 C -0.135 4.135 18 N -0.543 5.543 19 Si 0.692 3.308 20 H -0.207 1.207 21 H -0.215 1.215 22 H -0.196 1.196 23 C -0.076 4.076 24 C -0.010 4.010 25 O -0.284 6.284 26 C -0.064 4.064 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.195 0.805 36 H 0.044 0.956 37 H 0.122 0.878 38 H 0.043 0.957 39 H -0.002 1.002 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.047 0.953 46 H 0.058 0.942 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.728 17.847 -0.249 19.869 hybrid contribution 2.950 -0.078 -0.305 2.967 sum -5.778 17.769 -0.553 18.693 Atomic orbital electron populations 1.21769 0.93285 1.02481 1.02997 1.22961 0.94626 0.80475 1.03112 1.86548 1.24492 1.31749 1.84871 1.19551 0.80564 0.87415 0.75404 1.91125 1.59846 1.39952 1.40248 1.20652 0.91452 0.90114 1.10786 1.73638 1.21980 0.94541 1.18419 1.45232 1.03992 1.07088 1.51407 1.22085 1.03398 0.75597 1.03831 1.22559 0.88876 0.95186 1.10695 1.20422 0.94445 0.92855 1.04786 1.20328 0.90592 0.96462 0.91897 1.61826 1.48704 1.06565 1.05327 1.20271 0.88976 0.90990 0.95991 1.21424 1.00540 0.89961 1.41418 0.87450 1.24904 0.97208 0.95594 0.95823 1.69922 1.35157 0.98648 1.50540 0.87065 0.87889 0.77356 0.78532 1.20706 1.21512 1.19578 1.22094 0.97929 0.95215 0.92358 1.22600 0.84298 0.98557 0.95506 1.88044 1.26137 1.87843 1.26368 1.22647 1.01877 0.97987 0.83876 0.90540 0.91901 0.91802 0.90729 0.91335 0.89993 0.88898 0.88729 0.80507 0.95561 0.87752 0.95702 1.00163 0.93209 0.91175 0.94946 0.94586 0.92674 0.95331 0.94204 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.29 37.16 0.38 -1.35 16 2 C 0.06 0.99 6.29 37.16 0.23 1.22 16 3 O -0.36 -6.67 10.23 -40.58 -0.42 -7.09 16 4 C 0.53 11.20 7.96 34.54 0.27 11.47 16 5 O -0.43 -10.66 13.37 -19.26 -0.26 -10.92 16 6 C 0.03 0.54 7.16 -82.79 -0.59 -0.05 16 7 N -0.25 -4.15 11.99 33.41 0.40 -3.75 16 8 N -0.29 -3.70 3.70 -68.13 -0.25 -3.95 16 9 C 0.09 0.62 11.31 59.85 0.68 1.30 16 10 C -0.03 -0.41 10.59 -17.17 -0.18 -0.59 16 11 C -0.12 -2.04 4.77 -104.39 -0.50 -2.54 16 12 C 0.14 2.72 4.49 -4.97 -0.02 2.70 16 13 N -0.50 -10.99 4.37 -237.52 -1.04 -12.03 16 14 C 0.16 4.09 3.60 -4.98 -0.02 4.07 16 15 C -0.49 -14.67 9.11 -34.44 -0.31 -14.98 16 16 H 0.11 3.52 6.11 -52.49 -0.32 3.20 16 17 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 18 N -0.90 -28.77 13.96 55.43 0.77 -28.00 16 19 Si 0.86 22.08 27.44 -169.99 -4.66 17.41 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 H -0.27 -6.61 6.62 56.52 0.37 -6.23 16 23 C 0.05 0.95 5.21 -3.83 -0.02 0.93 16 24 C 0.07 1.20 6.02 37.16 0.22 1.42 16 25 O -0.37 -7.19 10.65 -35.23 -0.38 -7.56 16 26 C 0.03 0.51 11.01 101.05 1.11 1.62 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.07 1.28 7.97 -51.93 -0.41 0.86 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.39 8.13 -51.93 -0.42 -0.04 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.18 1.67 8.06 -52.48 -0.42 1.24 16 36 H 0.03 0.47 8.13 -51.93 -0.42 0.04 16 37 H 0.10 2.44 6.79 -51.93 -0.35 2.08 16 38 H 0.03 0.63 5.37 -51.94 -0.28 0.35 16 39 H -0.02 -0.47 7.05 -51.93 -0.37 -0.84 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 41 H 0.07 1.19 6.36 -51.93 -0.33 0.86 16 42 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 43 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 1.06 6.08 -51.93 -0.32 0.75 16 45 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 387.72 15.07 5.84 5.84 Total: -1.00 -37.92 387.72 -6.28 -44.20 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -7.46 Total: -1.23 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 1.16 Total: 7.07 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: -0.12 Total: -47.73 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -1.05 Total: -25.57 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.66 Total: 17.41 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.92 -6.28 -44.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613735096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.430 kcal (2) G-P(sol) polarization free energy of solvation -37.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.86 seconds