Wall clock time and date at job start Fri Apr 10 2020 18:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47251 * 2 1 4 4 C 1.34731 * 117.00240 * 184.92091 * 3 2 1 5 5 O 1.21487 * 119.99639 * 5.06915 * 4 3 2 6 6 C 1.47578 * 120.00146 * 185.06439 * 4 3 2 7 7 N 1.31863 * 126.52576 * 355.58072 * 6 4 3 8 8 N 1.28465 * 110.06223 * 179.97438 * 7 6 4 9 9 C 1.46500 * 124.87645 * 179.97438 * 8 7 6 10 10 C 1.35047 * 110.24038 * 0.26450 * 8 7 6 11 11 C 1.35343 * 107.24185 * 359.56983 * 10 8 7 12 12 C 1.50703 * 127.24772 * 180.15201 * 11 10 8 13 13 N 1.46903 * 109.46911 * 258.05562 * 12 11 10 14 14 C 1.46905 * 110.99960 * 189.10255 * 13 12 11 15 15 C 1.50695 * 109.46818 * 75.70612 * 14 13 12 16 16 H 1.07999 * 120.00469 * 3.97530 * 15 14 13 17 17 C 1.37885 * 120.00017 * 183.97213 * 15 14 13 18 18 N 1.31510 * 120.00126 * 184.99448 * 17 15 14 19 19 Si 1.86800 * 119.99558 * 4.98473 * 17 15 14 20 20 H 1.48504 * 109.46911 * 94.89418 * 19 17 15 21 21 H 1.48500 * 109.47266 * 214.89472 * 19 17 15 22 22 H 1.48499 * 109.47633 * 334.89768 * 19 17 15 23 23 C 1.46896 * 111.00461 * 65.14526 * 13 12 11 24 24 C 1.53001 * 109.47626 * 189.99923 * 23 13 12 25 25 O 1.42897 * 109.46576 * 65.00092 * 24 23 13 26 26 C 1.42907 * 113.99646 * 180.02562 * 25 24 23 27 27 H 1.09000 * 109.47622 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47352 * 300.00905 * 1 2 3 29 29 H 1.09009 * 109.47202 * 60.00293 * 1 2 3 30 30 H 1.08997 * 109.47108 * 239.99559 * 2 1 3 31 31 H 1.09001 * 109.47049 * 119.99412 * 2 1 3 32 32 H 1.09000 * 109.46947 * 90.02613 * 9 8 7 33 33 H 1.09002 * 109.46998 * 210.02553 * 9 8 7 34 34 H 1.09001 * 109.47338 * 330.02359 * 9 8 7 35 35 H 1.08003 * 126.37137 * 179.70249 * 10 8 7 36 36 H 1.09003 * 109.46957 * 18.04860 * 12 11 10 37 37 H 1.08996 * 109.47069 * 138.05513 * 12 11 10 38 38 H 1.08989 * 109.47118 * 195.70943 * 14 13 12 39 39 H 1.09000 * 109.46738 * 315.71175 * 14 13 12 40 40 H 0.97003 * 119.99802 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.47370 * 310.00723 * 23 13 12 42 42 H 1.09002 * 109.46939 * 70.00110 * 23 13 12 43 43 H 1.08995 * 109.47126 * 185.00588 * 24 23 13 44 44 H 1.09000 * 109.46937 * 305.00674 * 24 23 13 45 45 H 1.08997 * 109.47004 * 299.99650 * 26 25 24 46 46 H 1.08991 * 109.47406 * 59.99951 * 26 25 24 47 47 H 1.09000 * 109.47150 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3455 1.5470 -0.1030 5 8 4.0739 0.5915 -0.2828 6 6 3.9191 2.9026 0.0026 7 7 3.2481 4.0322 0.1149 8 7 4.0623 5.0234 0.1843 9 6 3.6639 6.4272 0.3142 10 6 5.3380 4.5860 0.1138 11 6 5.2943 3.2378 0.0033 12 6 6.4635 2.2929 -0.1032 13 7 6.6300 1.8757 -1.5018 14 6 7.6170 0.7934 -1.6143 15 6 7.0000 -0.4996 -1.1471 16 1 5.9588 -0.5292 -0.8620 17 6 7.7649 -1.6451 -1.0837 18 7 7.2049 -2.7932 -0.7708 19 14 9.5964 -1.5662 -1.4424 20 1 10.3445 -1.4185 -0.1681 21 1 10.0216 -2.8151 -2.1241 22 1 9.8793 -0.4023 -2.3201 23 6 6.9998 3.0158 -2.3510 24 6 6.9211 2.6029 -3.8221 25 8 5.5656 2.3034 -4.1608 26 6 5.3809 1.9040 -5.5204 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.5864 6.6867 1.3701 33 1 4.4107 7.0624 -0.1622 34 1 2.6982 6.5771 -0.1685 35 1 6.2274 5.1980 0.1427 36 1 7.3691 2.7958 0.2362 37 1 6.2800 1.4164 0.5181 38 1 7.9287 0.6926 -2.6539 39 1 8.4839 1.0266 -0.9961 40 1 7.7431 -3.5990 -0.7258 41 1 6.3134 3.8427 -2.1684 42 1 8.0169 3.3293 -2.1156 43 1 7.2803 3.4195 -4.4484 44 1 7.5399 1.7206 -3.9854 45 1 5.7080 2.7059 -6.1822 46 1 5.9676 1.0071 -5.7186 47 1 4.3259 1.6949 -5.6976 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613735096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:25 Heat of formation + Delta-G solvation = -55.240154 kcal Electronic energy + Delta-G solvation = -29375.990273 eV Core-core repulsion = 25368.055808 eV Total energy + Delta-G solvation = -4007.934465 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 2.93 seconds Orbital eigenvalues (eV) -43.63761 -40.99529 -39.30407 -37.83045 -37.35014 -34.74552 -34.28889 -32.76336 -32.22225 -31.07222 -29.45558 -28.44413 -27.22710 -26.10094 -24.64682 -23.99503 -23.25693 -21.81782 -21.64562 -20.76941 -18.87146 -18.61653 -17.89329 -17.66743 -17.36195 -17.10152 -16.87106 -16.75232 -16.37157 -16.09953 -15.48048 -15.17786 -15.02647 -14.88633 -14.50536 -14.39240 -14.15232 -13.71206 -13.58484 -13.51812 -13.37474 -13.29430 -12.99821 -12.85310 -12.80379 -12.49509 -12.48650 -12.45459 -12.04886 -11.80300 -11.71293 -11.59372 -11.47059 -11.41830 -11.19754 -10.64876 -10.42611 -10.16458 -9.78726 -8.71462 -8.10851 -6.09932 0.43915 1.12827 1.35050 1.36919 1.46979 1.47828 1.99182 2.23025 2.43438 3.02884 3.19453 3.34050 3.49928 3.87358 4.01197 4.04374 4.15826 4.19293 4.24549 4.37616 4.38181 4.43182 4.48930 4.52114 4.54730 4.56894 4.61826 4.69579 4.76381 4.80295 4.84371 4.90137 4.92917 4.95987 5.04677 5.07533 5.12592 5.18579 5.36004 5.55177 5.73662 5.93205 6.21037 6.42909 6.57690 6.74417 6.89133 7.01216 7.26934 7.51691 9.06937 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.008934 B = 0.005150 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.364669 B = 5435.739700 C = 6532.758103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.527 3.473 5 O -0.486 6.486 6 C -0.012 4.012 7 N -0.258 5.258 8 N -0.270 5.270 9 C 0.076 3.924 10 C 0.005 3.995 11 C -0.147 4.147 12 C 0.145 3.855 13 N -0.525 5.525 14 C 0.177 3.823 15 C -0.502 4.502 16 H 0.059 0.941 17 C -0.003 4.003 18 N -0.957 5.957 19 Si 0.942 3.058 20 H -0.270 1.270 21 H -0.287 1.287 22 H -0.246 1.246 23 C 0.054 3.946 24 C 0.064 3.936 25 O -0.403 6.403 26 C 0.029 3.971 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.132 0.868 34 H 0.099 0.901 35 H 0.229 0.771 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.025 0.975 39 H -0.011 1.011 40 H 0.259 0.741 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.033 0.967 45 H 0.062 0.938 46 H 0.030 0.970 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.895 22.658 -0.877 23.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.369 3.631 5 O -0.369 6.369 6 C -0.168 4.168 7 N -0.097 5.097 8 N -0.059 5.059 9 C -0.061 4.061 10 C -0.139 4.139 11 C -0.158 4.158 12 C 0.017 3.983 13 N -0.250 5.250 14 C 0.050 3.950 15 C -0.541 4.541 16 H 0.077 0.923 17 C -0.197 4.197 18 N -0.600 5.600 19 Si 0.766 3.234 20 H -0.196 1.196 21 H -0.213 1.213 22 H -0.170 1.170 23 C -0.074 4.074 24 C -0.012 4.012 25 O -0.322 6.322 26 C -0.067 4.067 27 H 0.119 0.881 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.123 0.877 33 H 0.150 0.850 34 H 0.118 0.882 35 H 0.246 0.754 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.043 0.957 39 H 0.006 0.994 40 H 0.068 0.932 41 H 0.103 0.897 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.051 0.949 45 H 0.080 0.920 46 H 0.049 0.951 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.388 22.546 -0.893 23.742 hybrid contribution 2.335 -1.379 -0.073 2.713 sum -5.053 21.166 -0.966 21.782 Atomic orbital electron populations 1.21770 0.89320 1.04347 1.03830 1.23218 0.97638 0.79380 1.01716 1.86558 1.23597 1.33050 1.84354 1.20159 0.80765 0.88248 0.73958 1.91114 1.60906 1.41866 1.43062 1.20562 0.92556 0.89781 1.13875 1.73582 1.22702 0.94666 1.18790 1.45874 1.03659 1.08345 1.48067 1.22694 1.05086 0.72300 1.06046 1.23094 0.90378 0.93618 1.06825 1.20308 0.92923 0.94611 1.07910 1.20049 0.92783 0.95304 0.90176 1.61613 1.48257 1.07916 1.07166 1.19952 0.89466 0.90138 0.95451 1.21684 0.98934 0.92703 1.40741 0.92280 1.25871 1.03218 0.94863 0.95772 1.70124 1.37521 0.99679 1.52645 0.85801 0.80389 0.78130 0.79059 1.19589 1.21340 1.16985 1.22208 0.99717 0.93881 0.91602 1.22719 0.83288 0.99013 0.96211 1.87995 1.27392 1.88214 1.28630 1.22798 1.02292 0.98788 0.82837 0.88130 0.90628 0.91280 0.93061 0.91997 0.87688 0.84974 0.88195 0.75438 0.92869 0.93016 0.95674 0.99384 0.93195 0.89720 0.92184 0.90467 0.94879 0.91999 0.95133 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 10.29 71.98 0.74 -2.46 16 2 C 0.05 1.88 6.29 71.98 0.45 2.34 16 3 O -0.36 -14.35 10.23 -56.41 -0.58 -14.93 16 4 C 0.53 24.13 7.96 70.29 0.56 24.68 16 5 O -0.49 -26.73 13.37 19.88 0.27 -26.46 16 6 C -0.01 -0.48 7.16 42.42 0.30 -0.17 16 7 N -0.26 -8.36 11.99 -48.22 -0.58 -8.93 16 8 N -0.27 -5.97 3.70 -369.45 -1.37 -7.34 16 9 C 0.08 0.65 11.31 127.77 1.44 2.10 16 10 C 0.00 0.10 10.59 83.53 0.88 0.99 16 11 C -0.15 -5.13 4.77 -19.72 -0.09 -5.23 16 12 C 0.15 5.92 4.49 85.56 0.38 6.30 16 13 N -0.53 -23.30 4.37 -905.37 -3.96 -27.26 16 14 C 0.18 8.96 3.60 85.55 0.31 9.27 16 15 C -0.50 -31.50 9.11 25.60 0.23 -31.26 16 16 H 0.06 4.24 6.11 -2.91 -0.02 4.23 16 17 C 0.00 -0.16 5.47 84.66 0.46 0.30 16 18 N -0.96 -64.57 13.96 21.45 0.30 -64.27 16 19 Si 0.94 46.53 27.44 68.60 1.88 48.41 16 20 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 22 H -0.25 -11.09 6.62 99.48 0.66 -10.43 16 23 C 0.05 1.80 5.21 86.30 0.45 2.25 16 24 C 0.06 2.16 6.02 71.98 0.43 2.59 16 25 O -0.40 -15.66 10.65 -148.98 -1.59 -17.25 16 26 C 0.03 0.88 11.01 113.37 1.25 2.13 16 27 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.05 1.98 7.97 -2.39 -0.02 1.96 16 31 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.13 0.20 8.13 -2.39 -0.02 0.18 16 34 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.23 2.72 8.06 -2.91 -0.02 2.70 16 36 H 0.05 1.81 8.13 -2.39 -0.02 1.79 16 37 H 0.05 2.62 6.79 -2.39 -0.02 2.60 16 38 H 0.03 1.28 5.37 -2.39 -0.01 1.26 16 39 H -0.01 -0.55 7.05 -2.39 -0.02 -0.57 16 40 H 0.26 16.31 8.31 -92.71 -0.77 15.54 16 41 H 0.08 2.58 6.36 -2.38 -0.02 2.56 16 42 H 0.06 1.69 8.12 -2.39 -0.02 1.67 16 43 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.03 1.24 6.08 -2.39 -0.01 1.23 16 45 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -92.94 387.72 3.11 -89.83 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.91 Total: 14.37 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 7.81 Total: 13.82 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -5.60 Total: -107.79 kcal Atomic # 8 Polarization: -56.74 SS G_CDS: -1.90 Total: -58.64 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.88 Total: 48.41 kcal Total: -92.94 3.11 -89.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613735096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.590 kcal (2) G-P(sol) polarization free energy of solvation -92.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.93 seconds