Wall clock time and date at job start Fri Apr 10 2020 18:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46731 * 2 1 4 4 C 1.50696 * 109.47107 * 239.99557 * 2 1 3 5 5 O 1.21281 * 120.00312 * 281.28822 * 4 2 1 6 6 N 1.34778 * 119.99689 * 101.28891 * 4 2 1 7 7 C 1.46503 * 120.00134 * 352.44237 * 6 4 2 8 8 C 1.46504 * 119.99830 * 172.44229 * 6 4 2 9 9 C 1.50701 * 109.47383 * 90.00194 * 8 6 4 10 10 H 1.08001 * 119.99692 * 359.97438 * 9 8 6 11 11 C 1.37876 * 120.00141 * 180.02562 * 9 8 6 12 12 N 1.31514 * 119.99846 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00086 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46758 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46872 * 119.99670 * 13 11 9 16 16 H 1.48493 * 109.46964 * 239.99793 * 13 11 9 17 17 N 1.46900 * 109.47009 * 119.99698 * 2 1 3 18 18 C 1.48563 * 110.99925 * 163.67827 * 17 2 1 19 19 C 1.54374 * 104.59174 * 200.95839 * 18 17 2 20 20 C 1.54259 * 105.06369 * 23.85760 * 19 18 17 21 21 H 1.08999 * 110.32298 * 118.99834 * 20 19 18 22 22 N 1.46507 * 110.32224 * 241.10081 * 20 19 18 23 23 C 1.47090 * 125.56067 * 238.54736 * 22 20 19 24 24 C 1.54088 * 103.77737 * 180.02562 * 23 22 20 25 25 O 1.45704 * 104.00591 * 359.79377 * 24 23 22 26 26 C 1.33768 * 109.48043 * 0.34667 * 25 24 23 27 27 O 1.21509 * 123.07293 * 179.89145 * 26 25 24 28 28 C 1.48564 * 111.00100 * 48.26166 * 17 2 1 29 29 H 1.09005 * 109.47280 * 183.50320 * 1 2 3 30 30 H 1.09000 * 109.47265 * 303.50776 * 1 2 3 31 31 H 1.09007 * 109.47153 * 63.51136 * 1 2 3 32 32 H 1.08997 * 109.47122 * 84.97720 * 7 6 4 33 33 H 1.09004 * 109.46686 * 204.97468 * 7 6 4 34 34 H 1.08993 * 109.46957 * 324.97380 * 7 6 4 35 35 H 1.09008 * 109.46683 * 210.00066 * 8 6 4 36 36 H 1.09003 * 109.47335 * 329.99926 * 8 6 4 37 37 H 0.96998 * 120.00127 * 180.02562 * 12 11 9 38 38 H 1.08998 * 110.40932 * 82.18243 * 18 17 2 39 39 H 1.08994 * 110.40879 * 319.74177 * 18 17 2 40 40 H 1.08994 * 110.32509 * 264.95331 * 19 18 17 41 41 H 1.09008 * 110.32183 * 142.75161 * 19 18 17 42 42 H 1.09003 * 110.56343 * 298.59370 * 23 22 20 43 43 H 1.09002 * 110.56538 * 61.44100 * 23 22 20 44 44 H 1.08994 * 110.52170 * 118.62945 * 24 23 22 45 45 H 1.09003 * 110.52176 * 241.23197 * 24 23 22 46 46 H 1.08997 * 110.41281 * 40.25904 * 28 17 2 47 47 H 1.09007 * 110.41067 * 277.81791 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.0406 -1.9226 -1.2698 6 7 2.4724 0.0012 -2.2870 7 6 2.3102 1.4571 -2.3083 8 6 3.1128 -0.6812 -3.4142 9 6 2.0670 -1.0653 -4.4289 10 1 1.0289 -0.8255 -4.2517 11 6 2.4351 -1.7237 -5.5830 12 7 3.6991 -2.0161 -5.7985 13 14 1.1386 -2.2004 -6.8404 14 1 -0.1977 -1.7615 -6.3642 15 1 1.4424 -1.5445 -8.1376 16 1 1.1405 -3.6746 -7.0187 17 7 2.0197 -0.6924 1.1995 18 6 3.4521 -1.0591 1.0551 19 6 3.6672 -2.1965 2.0765 20 6 2.2690 -2.8113 2.2924 21 1 2.2669 -3.8604 1.9965 22 7 1.8656 -2.6781 3.6945 23 6 1.5193 -3.7891 4.5942 24 6 1.1776 -3.0910 5.9247 25 8 1.3701 -1.6751 5.6396 26 6 1.7516 -1.5243 4.3663 27 8 1.9788 -0.4405 3.8662 28 6 1.3266 -1.9936 1.3833 29 1 -0.3634 -1.0258 0.0628 30 1 -0.3634 0.5673 0.8569 31 1 -0.3634 0.4584 -0.9198 32 1 3.1421 1.9231 -1.7803 33 1 2.2943 1.8057 -3.3410 34 1 1.3737 1.7255 -1.8197 35 1 3.8403 -0.0140 -3.8768 36 1 3.6185 -1.5780 -3.0562 37 1 3.9582 -2.4790 -6.6106 38 1 4.0885 -0.2074 1.2949 39 1 3.6538 -1.4128 0.0440 40 1 4.0534 -1.7957 3.0136 41 1 4.3510 -2.9434 1.6729 42 1 0.6547 -4.3338 4.2146 43 1 2.3698 -4.4589 4.7204 44 1 0.1436 -3.2901 6.2061 45 1 1.8567 -3.4168 6.7126 46 1 1.1957 -2.4936 0.4237 47 1 0.3627 -1.8454 1.8703 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852432073.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:03 Heat of formation + Delta-G solvation = -93.340498 kcal Electronic energy + Delta-G solvation = -29647.253937 eV Core-core repulsion = 25637.667317 eV Total energy + Delta-G solvation = -4009.586620 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.51741 -41.54463 -39.18371 -37.85299 -36.65479 -36.08735 -34.80378 -33.82012 -30.86878 -30.12775 -29.27020 -29.24302 -27.40583 -25.86109 -24.45847 -24.40367 -23.12875 -22.38837 -20.81283 -19.80526 -18.70747 -18.35112 -18.18585 -17.97622 -17.73983 -17.17977 -16.85423 -16.37520 -16.03719 -15.72158 -15.32609 -15.17389 -14.91765 -14.79635 -14.55806 -14.35482 -14.10186 -13.73895 -13.58968 -13.48589 -13.35324 -13.18422 -13.11572 -13.06253 -12.78404 -12.72432 -12.58247 -12.48644 -12.27637 -12.16306 -12.02840 -11.98004 -11.69153 -11.44027 -11.27408 -10.98011 -10.66503 -9.80599 -9.43925 -9.11895 -8.23748 -6.38253 1.34924 1.36612 1.48810 1.54891 1.73079 1.88213 2.29660 2.44110 2.75415 2.97529 3.05583 3.44422 3.46810 3.58563 3.68426 3.96575 4.04835 4.09760 4.18930 4.22323 4.29375 4.36839 4.51669 4.56547 4.62822 4.64382 4.72407 4.74360 4.78754 4.82463 4.83896 4.90629 4.92888 4.97413 5.02574 5.05916 5.13512 5.19406 5.55071 5.57092 5.80549 5.83321 5.92248 6.04895 6.55323 6.67441 6.76096 7.21713 7.26105 7.43207 8.83347 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.022947 B = 0.003107 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.886792 B = 9010.890995 C = 9332.282203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 H 0.113 0.887 4 C 0.482 3.518 5 O -0.579 6.579 6 N -0.610 5.610 7 C 0.078 3.922 8 C 0.262 3.738 9 C -0.537 4.537 10 H 0.050 0.950 11 C 0.008 3.992 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.268 1.268 15 H -0.270 1.270 16 H -0.280 1.280 17 N -0.460 5.460 18 C 0.026 3.974 19 C -0.119 4.119 20 C 0.181 3.819 21 H 0.127 0.873 22 N -0.624 5.624 23 C 0.060 3.940 24 C 0.038 3.962 25 O -0.357 6.357 26 C 0.626 3.374 27 O -0.530 6.530 28 C 0.012 3.988 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.020 0.980 36 H -0.003 1.003 37 H 0.267 0.733 38 H 0.075 0.925 39 H 0.032 0.968 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.126 0.874 45 H 0.128 0.872 46 H 0.072 0.928 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.408 -2.530 22.840 23.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.057 4.057 3 H 0.131 0.869 4 C 0.269 3.731 5 O -0.460 6.460 6 N -0.342 5.342 7 C -0.064 4.064 8 C 0.141 3.859 9 C -0.576 4.576 10 H 0.068 0.932 11 C -0.191 4.191 12 N -0.568 5.568 13 Si 0.792 3.208 14 H -0.193 1.193 15 H -0.195 1.195 16 H -0.206 1.206 17 N -0.183 5.183 18 C -0.102 4.102 19 C -0.158 4.158 20 C 0.079 3.921 21 H 0.145 0.855 22 N -0.372 5.372 23 C -0.061 4.061 24 C -0.036 4.036 25 O -0.268 6.268 26 C 0.380 3.620 27 O -0.414 6.414 28 C -0.116 4.116 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.038 0.962 36 H 0.015 0.985 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.144 0.856 45 H 0.146 0.854 46 H 0.090 0.910 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.292 -2.097 23.056 23.748 hybrid contribution -0.019 -0.837 -1.876 2.055 sum -5.311 -2.934 21.179 22.032 Atomic orbital electron populations 1.21741 0.91005 1.02807 1.03355 1.22210 0.98367 0.99665 0.85470 0.86915 1.22210 0.77434 0.88013 0.85396 1.90546 1.57008 1.15854 1.82611 1.48360 1.58129 1.08860 1.18813 1.21904 1.02418 0.78635 1.03488 1.18732 0.92378 0.91471 0.83322 1.21681 0.94089 1.37845 1.03977 0.93153 1.25843 0.97677 0.95352 1.00242 1.70053 1.17479 1.41727 1.27590 0.85374 0.78960 0.77948 0.78565 1.19274 1.19487 1.20598 1.66087 1.02724 1.19433 1.30049 1.23157 0.90618 0.98490 0.97940 1.22571 0.96874 0.97252 0.99093 1.21566 0.92852 1.00925 0.76787 0.85534 1.48232 1.70478 1.06596 1.11883 1.23143 1.04383 0.90167 0.88441 1.24657 1.06436 0.74519 0.97961 1.87255 1.81728 1.30725 1.27095 1.18782 0.77389 0.85656 0.80212 1.91127 1.54431 1.27424 1.68401 1.23701 0.97829 0.90447 0.99671 0.92765 0.89447 0.91321 0.91322 0.91023 0.89630 0.96190 0.98472 0.92411 0.90633 0.94976 0.90932 0.89414 0.87257 0.86956 0.85603 0.85436 0.90986 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 8.76 71.98 0.63 -3.14 16 2 C 0.06 1.83 2.39 44.17 0.11 1.94 16 3 H 0.11 3.37 6.48 -2.39 -0.02 3.35 16 4 C 0.48 20.28 4.97 87.66 0.44 20.72 16 5 O -0.58 -28.63 12.61 -3.03 -0.04 -28.67 16 6 N -0.61 -26.65 2.86 -851.11 -2.43 -29.08 16 7 C 0.08 2.51 9.52 127.77 1.22 3.72 16 8 C 0.26 14.32 5.08 85.63 0.44 14.76 16 9 C -0.54 -31.27 9.39 25.60 0.24 -31.03 16 10 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 11 C 0.01 0.44 5.46 84.65 0.46 0.91 16 12 N -0.93 -56.27 13.29 21.45 0.28 -55.99 16 13 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 16 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 17 N -0.46 -15.12 3.88 -860.74 -3.34 -18.46 16 18 C 0.03 0.87 6.13 86.45 0.53 1.40 16 19 C -0.12 -3.17 6.19 31.49 0.19 -2.98 16 20 C 0.18 4.32 3.79 45.88 0.17 4.49 16 21 H 0.13 2.41 8.12 -2.39 -0.02 2.39 16 22 N -0.62 -12.63 2.83 -922.36 -2.61 -15.24 16 23 C 0.06 0.53 7.68 86.63 0.67 1.20 16 24 C 0.04 0.31 8.23 72.35 0.60 0.91 16 25 O -0.36 -7.82 11.09 -47.29 -0.52 -8.34 16 26 C 0.63 16.89 8.03 129.91 1.04 17.93 16 27 O -0.53 -18.99 15.11 19.66 0.30 -18.69 16 28 C 0.01 0.36 3.84 86.45 0.33 0.70 16 29 H 0.05 1.65 6.43 -2.38 -0.02 1.63 16 30 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.07 1.88 7.89 -2.38 -0.02 1.86 16 32 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.07 2.37 8.03 -2.38 -0.02 2.35 16 34 H 0.09 2.26 6.71 -2.39 -0.02 2.24 16 35 H 0.02 1.12 8.07 -2.38 -0.02 1.10 16 36 H 0.00 -0.18 7.54 -2.39 -0.02 -0.19 16 37 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 38 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.03 1.28 5.35 -2.39 -0.01 1.26 16 40 H 0.07 1.97 7.36 -2.39 -0.02 1.95 16 41 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 42 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.07 2.58 5.22 -2.39 -0.01 2.57 16 47 H 0.08 2.25 7.55 -2.38 -0.02 2.23 16 Total: -1.00 -82.00 367.98 1.70 -80.30 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.97 Total: 15.46 kcal Atomic # 6 Polarization: 24.47 SS G_CDS: 7.06 Total: 31.53 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -8.09 Total: -118.76 kcal Atomic # 8 Polarization: -55.44 SS G_CDS: -0.27 Total: -55.70 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -82.00 1.70 -80.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852432073.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.039 kcal (2) G-P(sol) polarization free energy of solvation -82.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds