Wall clock time and date at job start Fri Apr 10 2020 18:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47022 * 2 1 4 4 C 1.46496 * 119.99896 * 269.99674 * 3 2 1 5 5 C 1.50699 * 109.47398 * 270.00022 * 4 3 2 6 6 H 1.08003 * 120.00015 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00048 * 180.02562 * 5 4 3 8 8 N 1.31522 * 119.99916 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00086 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47340 * 89.99836 * 9 7 5 11 11 H 1.48500 * 109.47003 * 210.00191 * 9 7 5 12 12 H 1.48498 * 109.47056 * 329.99743 * 9 7 5 13 13 C 1.34777 * 119.99832 * 90.00138 * 3 2 1 14 14 O 1.21278 * 119.99854 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00161 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47107 * 180.02562 * 15 13 3 17 17 C 1.47449 * 110.99925 * 69.87541 * 16 15 13 18 18 C 1.54311 * 107.23220 * 123.25698 * 17 16 15 19 19 C 1.55140 * 103.02352 * 22.28584 * 18 17 16 20 20 H 1.08997 * 110.99089 * 82.43557 * 19 18 17 21 21 N 1.46502 * 110.99125 * 206.21979 * 19 18 17 22 22 C 1.47090 * 125.55515 * 238.25682 * 21 19 18 23 23 C 1.54091 * 103.77518 * 179.97438 * 22 21 19 24 24 O 1.45695 * 104.00737 * 0.32456 * 23 22 21 25 25 C 1.33770 * 109.47738 * 359.79191 * 24 23 22 26 26 O 1.21512 * 123.07298 * 180.02562 * 25 24 23 27 27 C 1.47840 * 111.00178 * 190.71556 * 16 15 13 28 28 H 1.09005 * 109.47443 * 299.99879 * 1 2 3 29 29 H 1.09000 * 109.47099 * 60.00377 * 1 2 3 30 30 H 1.09006 * 109.47010 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47614 * 239.99880 * 2 1 3 32 32 H 1.09000 * 109.47099 * 119.99622 * 2 1 3 33 33 H 1.09000 * 109.47082 * 30.00019 * 4 3 2 34 34 H 1.09004 * 109.46754 * 150.00286 * 4 3 2 35 35 H 0.96999 * 119.99664 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47152 * 60.00245 * 15 13 3 37 37 H 1.09001 * 109.46980 * 300.00345 * 15 13 3 38 38 H 1.08997 * 109.88742 * 242.66510 * 17 16 15 39 39 H 1.09000 * 109.88557 * 3.85348 * 17 16 15 40 40 H 1.09003 * 110.70864 * 140.66988 * 18 17 16 41 41 H 1.09003 * 110.70775 * 263.72575 * 18 17 16 42 42 H 1.09002 * 110.56840 * 298.61370 * 22 21 19 43 43 H 1.09003 * 110.56789 * 61.46515 * 22 21 19 44 44 H 1.08999 * 110.70018 * 241.60663 * 23 22 21 45 45 H 1.09002 * 110.33829 * 118.87187 * 23 22 21 46 46 H 1.09005 * 110.37490 * 332.47029 * 27 16 15 47 47 H 1.09002 * 110.37399 * 94.80649 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1493 2.3905 -2.8774 8 7 5.3917 2.1843 -3.2567 9 14 3.0135 3.4371 -3.9280 10 1 3.1172 4.8570 -3.5058 11 1 3.4065 3.3149 -5.3548 12 1 1.6136 2.9713 -3.7586 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9912 1.3063 2.4723 16 7 2.3090 2.2065 3.5889 17 6 1.3247 3.3005 3.6822 18 6 0.7207 3.2521 5.1013 19 6 1.8021 2.4947 5.9160 20 1 2.5976 3.1699 6.2313 21 7 1.2088 1.8125 7.0687 22 6 1.5824 2.0271 8.4751 23 6 0.6584 1.0684 9.2506 24 8 -0.1251 0.4152 8.2104 25 6 0.2421 0.8862 7.0134 26 8 -0.2559 0.5090 5.9711 27 6 2.3216 1.4740 4.8730 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5817 1.6877 -2.0284 34 1 2.0955 3.1411 -1.1383 35 1 5.7179 2.5754 -4.0823 36 1 2.6211 0.4186 2.5303 37 1 0.9431 1.0125 2.5299 38 1 1.8191 4.2586 3.5220 39 1 0.5396 3.1571 2.9399 40 1 0.5774 4.2589 5.4937 41 1 -0.2207 2.7026 5.1010 42 1 2.6285 1.7672 8.6374 43 1 1.3937 3.0599 8.7682 44 1 0.0083 1.6230 9.9272 45 1 1.2488 0.3359 9.8012 46 1 1.6580 0.6105 4.8239 47 1 3.3357 1.1606 5.1211 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852434129.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:09 Heat of formation + Delta-G solvation = -75.587850 kcal Electronic energy + Delta-G solvation = -28718.569725 eV Core-core repulsion = 24709.752918 eV Total energy + Delta-G solvation = -4008.816807 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.97635 -39.66334 -38.38001 -37.30804 -35.56732 -35.10797 -32.71629 -31.79090 -30.26923 -29.99619 -28.68541 -27.99162 -25.97585 -24.12219 -23.09603 -22.89988 -22.25284 -20.87491 -20.48392 -18.29352 -17.68969 -17.60777 -16.99110 -16.83193 -16.43538 -16.23842 -15.55738 -15.04348 -14.88090 -14.58146 -14.50818 -14.05399 -13.97894 -13.64110 -13.52063 -13.40046 -13.28357 -12.91581 -12.65163 -12.54168 -12.36767 -11.92336 -11.88316 -11.79600 -11.65392 -11.46704 -11.32447 -11.11261 -11.01684 -10.87955 -10.60222 -10.46692 -10.43946 -10.09720 -9.47403 -9.28405 -8.89608 -8.53211 -8.16896 -7.61847 -6.02986 -4.00913 1.99944 2.40338 3.03740 3.33121 3.38942 3.40922 3.46019 3.65107 3.72142 4.10157 4.16448 4.22450 4.44583 4.48458 4.58901 4.71630 4.78914 4.96625 5.00407 5.06293 5.17220 5.31341 5.31896 5.34674 5.42586 5.58390 5.61057 5.63959 5.71075 5.79491 5.80464 5.88015 6.06391 6.11492 6.21475 6.26718 6.46538 6.74415 6.95266 6.99609 6.99971 7.05671 7.45671 7.68007 7.70382 8.35990 8.54123 9.00656 9.11900 9.57855 11.10587 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.025905 B = 0.002691 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.625580 B =10401.938081 C =10819.977288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.596 5.596 4 C 0.218 3.782 5 C -0.525 4.525 6 H 0.074 0.926 7 C 0.071 3.929 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.523 6.523 15 C 0.034 3.966 16 N -0.503 5.503 17 C 0.058 3.942 18 C -0.157 4.157 19 C 0.168 3.832 20 H 0.115 0.885 21 N -0.623 5.623 22 C 0.065 3.935 23 C 0.041 3.959 24 O -0.331 6.331 25 C 0.641 3.359 26 O -0.514 6.514 27 C 0.027 3.973 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.035 0.965 35 H 0.264 0.736 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.067 0.933 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.378 -2.166 26.526 28.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.329 5.329 4 C 0.097 3.903 5 C -0.563 4.563 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.538 5.538 9 Si 0.703 3.297 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.191 1.191 13 C 0.296 3.704 14 O -0.399 6.399 15 C -0.097 4.097 16 N -0.227 5.227 17 C -0.070 4.070 18 C -0.196 4.196 19 C 0.066 3.934 20 H 0.133 0.867 21 N -0.371 5.371 22 C -0.059 4.059 23 C -0.034 4.034 24 O -0.241 6.241 25 C 0.395 3.605 26 O -0.398 6.398 27 C -0.101 4.101 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.086 0.914 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.967 -1.666 25.754 27.666 hybrid contribution -1.069 0.159 -0.375 1.144 sum -11.036 -1.507 25.379 27.715 Atomic orbital electron populations 1.22233 0.96854 1.01594 1.02116 1.21425 0.93325 0.83978 1.03017 1.47933 1.64625 1.13382 1.06956 1.19610 0.97216 0.93315 0.80122 1.21348 0.95368 1.32636 1.06982 0.90765 1.24860 0.94985 0.95865 0.97381 1.69906 1.15120 1.45155 1.23590 0.86848 0.81490 0.81624 0.79703 1.19956 1.21153 1.19120 1.20126 0.78543 0.87116 0.84644 1.90653 1.44425 1.17881 1.86895 1.22266 1.00691 0.96122 0.90624 1.63305 1.48339 1.09756 1.01333 1.22712 0.93423 0.96608 0.94299 1.23247 0.99247 1.00923 0.96216 1.22060 0.95205 0.93188 0.82911 0.86730 1.48058 1.39423 1.42417 1.07205 1.22847 1.00794 1.01347 0.80902 1.24290 0.93529 0.95782 0.89789 1.87300 1.59188 1.61330 1.16276 1.18530 0.79441 0.78729 0.83770 1.91054 1.59027 1.63094 1.26662 1.23417 1.01661 0.96606 0.88450 0.93094 0.92253 0.91982 0.89728 0.91561 0.95394 0.94700 0.92653 0.88468 0.91998 0.89335 0.92460 0.90346 0.90118 0.88761 0.88882 0.87600 0.87578 0.91444 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 10.24 37.15 0.38 -1.97 16 2 C 0.11 1.76 5.93 -4.04 -0.02 1.74 16 3 N -0.60 -12.69 2.46 -175.06 -0.43 -13.12 16 4 C 0.22 5.48 4.23 -5.20 -0.02 5.45 16 5 C -0.52 -15.41 9.94 -34.44 -0.34 -15.76 16 6 H 0.07 2.39 8.06 -52.48 -0.42 1.97 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -28.22 13.96 55.43 0.77 -27.44 16 9 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 10 H -0.27 -6.93 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 13 C 0.51 10.81 7.32 -10.98 -0.08 10.73 16 14 O -0.52 -13.13 15.12 5.56 0.08 -13.05 16 15 C 0.03 0.56 3.58 -4.98 -0.02 0.54 16 16 N -0.50 -7.73 4.85 -232.69 -1.13 -8.86 16 17 C 0.06 0.82 5.65 -2.84 -0.02 0.81 16 18 C -0.16 -1.74 6.46 -24.91 -0.16 -1.90 16 19 C 0.17 1.63 3.77 -65.79 -0.25 1.38 16 20 H 0.11 0.88 8.13 -51.93 -0.42 0.46 16 21 N -0.62 -5.32 2.99 -168.79 -0.51 -5.83 16 22 C 0.06 0.24 7.69 -3.15 -0.02 0.22 16 23 C 0.04 0.15 8.23 37.73 0.31 0.46 16 24 O -0.33 -3.18 11.09 -37.83 -0.42 -3.60 16 25 C 0.64 7.49 8.16 53.71 0.44 7.93 16 26 O -0.51 -8.07 14.79 -19.12 -0.28 -8.35 16 27 C 0.03 0.34 6.19 -2.30 -0.01 0.32 16 28 H 0.05 0.70 7.22 -51.93 -0.37 0.32 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 32 H 0.07 0.95 6.44 -51.93 -0.33 0.61 16 33 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 34 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 35 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 36 H 0.10 1.47 7.33 -51.93 -0.38 1.09 16 37 H 0.06 0.94 7.00 -51.93 -0.36 0.58 16 38 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.06 0.89 7.31 -51.93 -0.38 0.51 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 1.04 6.63 -51.93 -0.34 0.69 16 42 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 43 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.11 0.15 8.14 -51.93 -0.42 -0.28 16 45 H 0.11 0.15 8.14 -51.93 -0.42 -0.27 16 46 H 0.07 0.93 5.87 -51.93 -0.30 0.62 16 47 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 373.97 15.07 5.64 5.64 Total: -1.00 -38.47 373.97 -8.30 -46.78 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -7.44 Total: -1.50 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: 0.08 Total: 11.96 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -1.29 Total: -55.25 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.62 Total: -25.00 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.47 -8.30 -46.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852434129.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.809 kcal (2) G-P(sol) polarization free energy of solvation -38.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds