Wall clock time and date at job start Fri Apr 10 2020 18:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.50709 * 109.47273 * 270.00327 * 3 2 1 5 5 H 1.07999 * 119.99476 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00210 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99914 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00074 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47230 * 60.00308 * 8 6 4 10 10 H 1.48505 * 109.47033 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46974 * 299.99927 * 8 6 4 12 12 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00463 * 179.97438 * 12 2 1 14 14 C 1.50700 * 119.99675 * 359.72090 * 12 2 1 15 15 C 1.53004 * 109.47208 * 180.27843 * 14 12 2 16 16 N 1.46893 * 109.47282 * 179.97438 * 15 14 12 17 17 C 1.48527 * 111.00071 * 52.60061 * 16 15 14 18 18 C 1.54938 * 103.22776 * 159.72020 * 17 16 15 19 19 C 1.54597 * 102.92386 * 322.58884 * 18 17 16 20 20 H 1.09001 * 110.30791 * 263.03990 * 19 18 17 21 21 N 1.46497 * 110.31082 * 140.87265 * 19 18 17 22 22 C 1.47088 * 125.56332 * 124.00337 * 21 19 18 23 23 C 1.54090 * 103.77937 * 179.86918 * 22 21 19 24 24 O 1.45699 * 104.00722 * 0.37780 * 23 22 21 25 25 C 1.33769 * 109.47771 * 359.75196 * 24 23 22 26 26 O 1.21510 * 123.07115 * 179.97438 * 25 24 23 27 27 C 1.47907 * 111.00188 * 170.00160 * 16 15 14 28 28 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 29 29 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 30 30 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 31 31 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 32 32 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 33 33 H 0.97000 * 120.00447 * 179.97438 * 7 6 4 34 34 H 1.09009 * 109.47352 * 300.27556 * 14 12 2 35 35 H 1.08998 * 109.47585 * 60.27844 * 14 12 2 36 36 H 1.09000 * 109.46887 * 300.00372 * 15 14 12 37 37 H 1.08998 * 109.46846 * 59.99549 * 15 14 12 38 38 H 1.09001 * 110.67052 * 278.15489 * 17 16 15 39 39 H 1.09000 * 110.66956 * 41.28755 * 17 16 15 40 40 H 1.09002 * 110.72935 * 204.22857 * 18 17 16 41 41 H 1.09000 * 110.87644 * 81.01865 * 18 17 16 42 42 H 1.09004 * 110.56606 * 298.57698 * 22 21 19 43 43 H 1.09000 * 110.56209 * 61.42402 * 22 21 19 44 44 H 1.08997 * 110.73116 * 241.63788 * 23 22 21 45 45 H 1.09002 * 110.42760 * 118.95909 * 23 22 21 46 46 H 1.08999 * 109.90992 * 333.50693 * 27 16 15 47 47 H 1.09001 * 109.91821 * 94.80305 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0980 1.0958 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5533 3.6181 -0.6732 8 14 3.4378 3.4169 -3.4340 9 1 2.1405 3.5937 -4.1347 10 1 4.1792 4.7037 -3.4339 11 1 4.2412 2.3822 -4.1333 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 0.0053 15 6 2.3797 -3.6352 0.0104 16 7 1.6453 -4.9073 0.0166 17 6 0.6494 -4.9524 -1.0844 18 6 0.3777 -6.4683 -1.2548 19 6 1.7709 -7.0973 -1.0243 20 1 2.2625 -7.2881 -1.9783 21 7 1.6475 -8.3394 -0.2574 22 6 2.1477 -9.6574 -0.6774 23 6 1.7566 -10.5867 0.4878 24 8 1.0759 -9.7061 1.4280 25 6 1.0552 -8.4614 0.9385 26 8 0.5455 -7.5268 1.5244 27 6 2.5578 -6.0474 -0.2181 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0283 0.5138 32 1 3.1500 1.1384 0.5137 33 1 4.0301 4.4440 -0.8504 34 1 0.7588 -2.5261 0.8956 35 1 0.7587 -2.5340 -0.8844 36 1 3.0064 -3.5813 -0.8798 37 1 3.0064 -3.5735 0.9001 38 1 -0.2627 -4.4278 -0.7999 39 1 1.0674 -4.5314 -1.9987 40 1 0.0183 -6.6851 -2.2608 41 1 -0.3334 -6.8218 -0.5082 42 1 1.6638 -9.9740 -1.6014 43 1 3.2306 -9.6347 -0.7995 44 1 2.6432 -11.0239 0.9470 45 1 1.0821 -11.3693 0.1404 46 1 3.4264 -5.7165 -0.7874 47 1 2.8746 -6.4718 0.7347 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852435875.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:10 Heat of formation + Delta-G solvation = -81.918542 kcal Electronic energy + Delta-G solvation = -28011.236176 eV Core-core repulsion = 24002.144849 eV Total energy + Delta-G solvation = -4009.091327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.90612 -39.48675 -38.62739 -37.21325 -35.63959 -34.75407 -32.86386 -32.43800 -30.15425 -29.69698 -28.31357 -27.44188 -25.71463 -24.11527 -24.06197 -22.87768 -22.37846 -20.65299 -20.28107 -18.23390 -17.76949 -17.56058 -16.96329 -16.56615 -16.44391 -15.93022 -15.34685 -15.27684 -14.91196 -14.69908 -14.51382 -14.36913 -14.07361 -14.00053 -13.81365 -13.02573 -12.95767 -12.82040 -12.55559 -12.16628 -12.14787 -12.06661 -11.93398 -11.76130 -11.50424 -11.35528 -11.32145 -11.06701 -10.96749 -10.92565 -10.75025 -10.51723 -10.46747 -10.14164 -9.61921 -9.24234 -8.84151 -8.41544 -8.37103 -7.59235 -6.02082 -4.06949 2.07651 2.54120 3.11911 3.32114 3.36398 3.38478 3.50972 3.69319 3.74958 4.07137 4.12672 4.25983 4.39336 4.47461 4.53913 4.70630 4.72789 4.97435 5.00708 5.06096 5.12555 5.23281 5.27633 5.31807 5.38616 5.46984 5.53190 5.64554 5.66400 5.76308 5.87344 5.89446 5.99208 6.13382 6.22061 6.23732 6.26533 6.83513 7.01794 7.08875 7.10906 7.48232 7.58444 7.84556 7.94313 8.26198 8.47358 8.92482 9.14639 9.57826 11.05933 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.028180 B = 0.002203 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.381582 B =12705.307012 C =13005.659089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.604 5.604 3 C 0.245 3.755 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.505 3.495 13 O -0.546 6.546 14 C -0.138 4.138 15 C 0.064 3.936 16 N -0.504 5.504 17 C 0.035 3.965 18 C -0.135 4.135 19 C 0.169 3.831 20 H 0.103 0.897 21 N -0.628 5.628 22 C 0.064 3.936 23 C 0.042 3.958 24 O -0.333 6.333 25 C 0.636 3.364 26 O -0.492 6.492 27 C 0.030 3.970 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.055 0.945 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.266 -29.635 -2.616 30.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.074 0.926 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.291 3.709 13 O -0.424 6.424 14 C -0.178 4.178 15 C -0.064 4.064 16 N -0.228 5.228 17 C -0.093 4.093 18 C -0.174 4.174 19 C 0.067 3.933 20 H 0.121 0.879 21 N -0.377 5.377 22 C -0.059 4.059 23 C -0.034 4.034 24 O -0.243 6.243 25 C 0.389 3.611 26 O -0.374 6.374 27 C -0.099 4.099 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.074 0.926 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.137 -29.035 -1.513 29.715 hybrid contribution 0.668 0.380 -1.976 2.120 sum -5.469 -28.655 -3.489 29.380 Atomic orbital electron populations 1.21629 0.81430 1.02452 1.00484 1.48154 1.06195 1.07877 1.71346 1.19277 0.92581 0.78197 0.97411 1.21393 1.36535 1.06201 0.92296 0.92618 1.24947 0.95425 0.96420 0.97418 1.69926 1.38352 1.14356 1.30752 0.86555 0.78321 0.77796 0.84703 1.20273 1.21164 1.20245 1.20288 0.88054 0.85156 0.77377 1.90659 1.13999 1.87370 1.50387 1.21693 0.99297 0.92821 1.04006 1.22035 0.94946 0.86963 1.02457 1.64845 1.13244 1.02062 1.42668 1.23213 0.97447 0.95438 0.93164 1.22916 0.96612 0.95539 1.02343 1.21792 0.97333 0.81003 0.93198 0.87932 1.48180 1.60202 1.09039 1.20240 1.22802 1.01593 0.82825 0.98707 1.24233 0.98594 0.92687 0.87848 1.87317 1.73246 1.19365 1.44413 1.18561 0.78993 0.82640 0.80905 1.91156 1.47852 1.35927 1.62439 1.23208 0.94672 0.91707 1.00307 0.93681 0.90883 0.92466 0.95034 0.93864 0.92675 0.88742 0.89635 0.93755 0.89774 0.89367 0.93343 0.90645 0.89183 0.89160 0.89103 0.87733 0.87818 0.92645 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.38 10.24 59.84 0.61 2.00 16 2 N -0.60 -13.24 2.86 -182.96 -0.52 -13.77 16 3 C 0.24 6.59 5.16 -5.19 -0.03 6.56 16 4 C -0.53 -15.17 9.39 -34.44 -0.32 -15.49 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 8 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.51 10.80 7.67 -10.98 -0.08 10.72 16 13 O -0.55 -14.04 15.56 5.55 0.09 -13.95 16 14 C -0.14 -2.15 3.91 -27.88 -0.11 -2.26 16 15 C 0.06 0.97 4.32 -3.83 -0.02 0.95 16 16 N -0.50 -6.61 5.40 -230.46 -1.24 -7.86 16 17 C 0.04 0.38 5.10 -1.90 -0.01 0.37 16 18 C -0.14 -1.23 6.49 -24.87 -0.16 -1.40 16 19 C 0.17 1.41 3.69 -66.57 -0.25 1.16 16 20 H 0.10 0.58 8.12 -51.93 -0.42 0.16 16 21 N -0.63 -5.10 2.86 -169.68 -0.49 -5.58 16 22 C 0.06 0.22 7.68 -3.15 -0.02 0.20 16 23 C 0.04 0.15 8.23 37.73 0.31 0.46 16 24 O -0.33 -3.26 11.09 -37.83 -0.42 -3.68 16 25 C 0.64 7.45 7.81 53.71 0.42 7.87 16 26 O -0.49 -7.91 15.87 -19.12 -0.30 -8.21 16 27 C 0.03 0.33 5.92 -2.75 -0.02 0.32 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 30 H 0.06 0.77 6.45 -51.93 -0.33 0.43 16 31 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 32 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.09 1.37 8.11 -51.92 -0.42 0.95 16 35 H 0.09 1.17 6.06 -51.93 -0.31 0.86 16 36 H 0.04 0.70 7.77 -51.93 -0.40 0.30 16 37 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 38 H 0.09 0.94 7.67 -51.93 -0.40 0.55 16 39 H 0.05 0.50 8.00 -51.93 -0.42 0.08 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.09 1.03 6.44 -51.93 -0.33 0.70 16 42 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 43 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 44 H 0.10 0.18 8.14 -51.93 -0.42 -0.25 16 45 H 0.10 0.15 8.14 -51.93 -0.42 -0.28 16 46 H 0.06 0.57 7.57 -51.93 -0.39 0.18 16 47 H 0.08 1.06 7.48 -51.93 -0.39 0.67 16 LS Contribution 379.14 15.07 5.71 5.71 Total: -1.00 -38.11 379.14 -8.78 -46.89 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -7.55 Total: -3.44 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: 0.23 Total: 13.11 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -1.52 Total: -53.48 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.64 Total: -25.84 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.11 -8.78 -46.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852435875.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.029 kcal (2) G-P(sol) polarization free energy of solvation -38.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds