Wall clock time and date at job start Fri Apr 10 2020 18:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.50709 * 109.47273 * 270.00327 * 3 2 1 5 5 H 1.07999 * 119.99476 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00210 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99914 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00074 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47230 * 60.00308 * 8 6 4 10 10 H 1.48505 * 109.47033 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46974 * 299.99927 * 8 6 4 12 12 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00463 * 179.97438 * 12 2 1 14 14 C 1.50700 * 119.99675 * 359.72090 * 12 2 1 15 15 C 1.53004 * 109.47208 * 180.27843 * 14 12 2 16 16 N 1.46893 * 109.47282 * 179.97438 * 15 14 12 17 17 C 1.48527 * 111.00071 * 52.60061 * 16 15 14 18 18 C 1.54938 * 103.22776 * 159.72020 * 17 16 15 19 19 C 1.54597 * 102.92386 * 322.58884 * 18 17 16 20 20 H 1.09001 * 110.30791 * 263.03990 * 19 18 17 21 21 N 1.46497 * 110.31082 * 140.87265 * 19 18 17 22 22 C 1.47088 * 125.56332 * 124.00337 * 21 19 18 23 23 C 1.54090 * 103.77937 * 179.86918 * 22 21 19 24 24 O 1.45699 * 104.00722 * 0.37780 * 23 22 21 25 25 C 1.33769 * 109.47771 * 359.75196 * 24 23 22 26 26 O 1.21510 * 123.07115 * 179.97438 * 25 24 23 27 27 C 1.47907 * 111.00188 * 170.00160 * 16 15 14 28 28 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 29 29 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 30 30 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 31 31 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 32 32 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 33 33 H 0.97000 * 120.00447 * 179.97438 * 7 6 4 34 34 H 1.09009 * 109.47352 * 300.27556 * 14 12 2 35 35 H 1.08998 * 109.47585 * 60.27844 * 14 12 2 36 36 H 1.09000 * 109.46887 * 300.00372 * 15 14 12 37 37 H 1.08998 * 109.46846 * 59.99549 * 15 14 12 38 38 H 1.09001 * 110.67052 * 278.15489 * 17 16 15 39 39 H 1.09000 * 110.66956 * 41.28755 * 17 16 15 40 40 H 1.09002 * 110.72935 * 204.22857 * 18 17 16 41 41 H 1.09000 * 110.87644 * 81.01865 * 18 17 16 42 42 H 1.09004 * 110.56606 * 298.57698 * 22 21 19 43 43 H 1.09000 * 110.56209 * 61.42402 * 22 21 19 44 44 H 1.08997 * 110.73116 * 241.63788 * 23 22 21 45 45 H 1.09002 * 110.42760 * 118.95909 * 23 22 21 46 46 H 1.08999 * 109.90992 * 333.50693 * 27 16 15 47 47 H 1.09001 * 109.91821 * 94.80305 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0980 1.0958 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5533 3.6181 -0.6732 8 14 3.4378 3.4169 -3.4340 9 1 2.1405 3.5937 -4.1347 10 1 4.1792 4.7037 -3.4339 11 1 4.2412 2.3822 -4.1333 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 0.0053 15 6 2.3797 -3.6352 0.0104 16 7 1.6453 -4.9073 0.0166 17 6 0.6494 -4.9524 -1.0844 18 6 0.3777 -6.4683 -1.2548 19 6 1.7709 -7.0973 -1.0243 20 1 2.2625 -7.2881 -1.9783 21 7 1.6475 -8.3394 -0.2574 22 6 2.1477 -9.6574 -0.6774 23 6 1.7566 -10.5867 0.4878 24 8 1.0759 -9.7061 1.4280 25 6 1.0552 -8.4614 0.9385 26 8 0.5455 -7.5268 1.5244 27 6 2.5578 -6.0474 -0.2181 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0283 0.5138 32 1 3.1500 1.1384 0.5137 33 1 4.0301 4.4440 -0.8504 34 1 0.7588 -2.5261 0.8956 35 1 0.7587 -2.5340 -0.8844 36 1 3.0064 -3.5813 -0.8798 37 1 3.0064 -3.5735 0.9001 38 1 -0.2627 -4.4278 -0.7999 39 1 1.0674 -4.5314 -1.9987 40 1 0.0183 -6.6851 -2.2608 41 1 -0.3334 -6.8218 -0.5082 42 1 1.6638 -9.9740 -1.6014 43 1 3.2306 -9.6347 -0.7995 44 1 2.6432 -11.0239 0.9470 45 1 1.0821 -11.3693 0.1404 46 1 3.4264 -5.7165 -0.7874 47 1 2.8746 -6.4718 0.7347 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852435875.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:10 Heat of formation + Delta-G solvation = -111.309660 kcal Electronic energy + Delta-G solvation = -28012.510670 eV Core-core repulsion = 24002.144849 eV Total energy + Delta-G solvation = -4010.365821 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.55064 -40.84761 -39.82591 -38.09065 -36.68774 -36.30926 -34.76285 -33.66682 -31.06282 -30.51834 -29.63977 -28.73952 -27.29508 -25.62840 -24.47650 -24.01993 -23.61674 -21.75399 -21.00746 -19.84871 -18.70844 -18.42336 -18.10703 -18.04398 -17.48694 -17.14121 -16.88319 -16.60090 -16.28291 -15.81877 -15.54785 -15.34518 -14.99298 -14.94184 -14.41974 -14.35971 -14.20089 -13.87746 -13.76040 -13.52936 -13.44773 -13.30151 -13.14289 -12.86988 -12.79318 -12.72704 -12.57944 -12.38088 -12.26803 -12.19853 -12.12758 -11.98066 -11.72465 -11.53184 -11.29428 -10.65089 -10.62344 -9.84579 -9.43902 -9.34355 -8.22764 -6.38329 1.35989 1.40678 1.47902 1.48246 1.74023 1.82080 2.27462 2.42404 2.68319 3.01962 3.06506 3.41817 3.48114 3.56706 3.83307 3.88830 3.99890 4.06955 4.08638 4.23165 4.31983 4.36946 4.39139 4.54822 4.56564 4.60587 4.71076 4.72630 4.80692 4.81015 4.89156 4.90655 4.94877 5.00200 5.00961 5.03665 5.18705 5.22011 5.54894 5.56088 5.82903 5.92951 6.00184 6.04924 6.44752 6.68182 6.77335 7.07328 7.26845 7.46401 8.84321 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.028180 B = 0.002203 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.381582 B =12705.307012 C =13005.659089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.542 4.542 5 H 0.055 0.945 6 C 0.004 3.996 7 N -0.930 5.930 8 Si 0.971 3.029 9 H -0.259 1.259 10 H -0.279 1.279 11 H -0.276 1.276 12 C 0.496 3.504 13 O -0.600 6.600 14 C -0.117 4.117 15 C 0.075 3.925 16 N -0.520 5.520 17 C 0.031 3.969 18 C -0.128 4.128 19 C 0.172 3.828 20 H 0.143 0.857 21 N -0.622 5.622 22 C 0.063 3.937 23 C 0.034 3.966 24 O -0.358 6.358 25 C 0.630 3.370 26 O -0.552 6.552 27 C 0.028 3.972 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.022 0.978 32 H -0.004 1.004 33 H 0.267 0.733 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.034 0.966 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.107 0.893 41 H 0.063 0.937 42 H 0.120 0.880 43 H 0.112 0.888 44 H 0.124 0.876 45 H 0.130 0.870 46 H 0.062 0.938 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.381 -31.989 -5.661 33.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.581 4.581 5 H 0.073 0.927 6 C -0.195 4.195 7 N -0.569 5.569 8 Si 0.795 3.205 9 H -0.183 1.183 10 H -0.204 1.204 11 H -0.202 1.202 12 C 0.285 3.715 13 O -0.482 6.482 14 C -0.157 4.157 15 C -0.054 4.054 16 N -0.245 5.245 17 C -0.097 4.097 18 C -0.166 4.166 19 C 0.070 3.930 20 H 0.161 0.839 21 N -0.370 5.370 22 C -0.059 4.059 23 C -0.039 4.039 24 O -0.268 6.268 25 C 0.384 3.616 26 O -0.438 6.438 27 C -0.101 4.101 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.040 0.960 32 H 0.014 0.986 33 H 0.076 0.924 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.125 0.875 41 H 0.082 0.918 42 H 0.138 0.862 43 H 0.130 0.870 44 H 0.142 0.858 45 H 0.148 0.852 46 H 0.080 0.920 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.287 -31.458 -4.580 32.614 hybrid contribution 1.038 1.007 -0.960 1.736 sum -6.249 -30.451 -5.540 31.576 Atomic orbital electron populations 1.21931 0.77802 1.04086 1.02516 1.48204 1.08478 1.06418 1.71152 1.18764 0.91006 0.80415 0.96196 1.21661 1.36978 1.06572 0.92886 0.92700 1.25932 0.94886 0.96412 1.02266 1.70058 1.38847 1.14806 1.33235 0.85415 0.78895 0.77332 0.78848 1.18310 1.20370 1.20176 1.21304 0.87773 0.86642 0.75824 1.90626 1.16661 1.88252 1.52665 1.21596 0.98896 0.89180 1.06053 1.21798 0.94618 0.88194 1.00747 1.64780 1.13849 1.01343 1.44505 1.23323 0.96670 0.97021 0.92657 1.22860 0.96416 0.94138 1.03232 1.21895 0.96730 0.80418 0.93941 0.83930 1.48230 1.59028 1.10683 1.19040 1.23179 1.03134 0.80059 0.99485 1.24731 0.99706 0.92346 0.87166 1.87262 1.73910 1.19338 1.46337 1.18806 0.78715 0.82592 0.81519 1.91090 1.50509 1.38032 1.64201 1.23224 0.95174 0.91943 0.99792 0.91424 0.91397 0.88673 0.95956 0.98636 0.92384 0.87067 0.86686 0.94806 0.92418 0.89285 0.92213 0.87496 0.91808 0.86193 0.86971 0.85753 0.85245 0.91993 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.45 10.24 127.77 1.31 3.76 16 2 N -0.61 -27.10 2.86 -851.14 -2.43 -29.53 16 3 C 0.26 14.44 5.16 85.64 0.44 14.89 16 4 C -0.54 -31.91 9.39 25.60 0.24 -31.67 16 5 H 0.05 3.16 7.81 -2.91 -0.02 3.14 16 6 C 0.00 0.22 5.46 84.65 0.46 0.69 16 7 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 8 Si 0.97 45.27 29.54 68.60 2.03 47.29 16 9 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 C 0.50 21.56 7.67 87.66 0.67 22.23 16 13 O -0.60 -32.34 15.56 -3.04 -0.05 -32.39 16 14 C -0.12 -3.55 3.91 29.85 0.12 -3.43 16 15 C 0.08 2.30 4.32 86.31 0.37 2.67 16 16 N -0.52 -13.43 5.40 -883.03 -4.76 -18.20 16 17 C 0.03 0.60 5.10 86.65 0.44 1.04 16 18 C -0.13 -2.02 6.49 31.80 0.21 -1.81 16 19 C 0.17 2.44 3.69 45.87 0.17 2.61 16 20 H 0.14 0.94 8.12 -2.39 -0.02 0.92 16 21 N -0.62 -8.83 2.86 -922.45 -2.64 -11.47 16 22 C 0.06 0.20 7.68 86.64 0.67 0.87 16 23 C 0.03 0.16 8.23 72.35 0.60 0.75 16 24 O -0.36 -6.81 11.09 -47.30 -0.52 -7.33 16 25 C 0.63 14.69 7.81 129.91 1.01 15.70 16 26 O -0.55 -18.51 15.87 19.65 0.31 -18.20 16 27 C 0.03 0.60 5.92 86.45 0.51 1.11 16 28 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.07 2.19 8.07 -2.39 -0.02 2.18 16 30 H 0.09 2.24 6.45 -2.39 -0.02 2.22 16 31 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 32 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 33 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 34 H 0.11 3.05 8.11 -2.38 -0.02 3.03 16 35 H 0.12 2.82 6.06 -2.39 -0.01 2.81 16 36 H 0.03 1.09 7.77 -2.39 -0.02 1.07 16 37 H 0.06 2.03 8.10 -2.39 -0.02 2.01 16 38 H 0.09 1.70 7.67 -2.39 -0.02 1.68 16 39 H 0.06 1.05 8.00 -2.39 -0.02 1.03 16 40 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 1.40 6.44 -2.39 -0.02 1.39 16 42 H 0.12 -0.24 8.14 -2.38 -0.02 -0.26 16 43 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 44 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 45 H 0.13 -0.09 8.14 -2.39 -0.02 -0.11 16 46 H 0.06 1.23 7.57 -2.39 -0.02 1.22 16 47 H 0.06 1.55 7.48 -2.39 -0.02 1.54 16 Total: -1.00 -90.17 379.14 0.39 -89.77 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 0.96 Total: 7.78 kcal Atomic # 6 Polarization: 22.18 SS G_CDS: 7.22 Total: 29.40 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -9.55 Total: -116.32 kcal Atomic # 8 Polarization: -57.66 SS G_CDS: -0.26 Total: -57.92 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -90.17 0.39 -89.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852435875.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.535 kcal (2) G-P(sol) polarization free energy of solvation -90.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds