Wall clock time and date at job start Fri Apr 10 2020 18:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46091 * 118.72743 * 2 1 4 4 C 1.53016 * 109.92416 * 161.61728 * 3 2 1 5 5 O 1.43257 * 108.66009 * 49.17543 * 4 3 2 6 6 C 1.42965 * 112.98336 * 291.62450 * 5 4 3 7 7 H 1.09004 * 109.36036 * 289.52481 * 6 5 4 8 8 C 1.50699 * 109.41737 * 169.69734 * 6 5 4 9 9 O 1.21289 * 119.99712 * 354.65286 * 8 6 5 10 10 N 1.34780 * 120.00523 * 174.65747 * 8 6 5 11 11 C 1.46494 * 119.99925 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.46892 * 179.97438 * 11 10 8 13 13 C 1.53041 * 109.46138 * 174.99850 * 12 11 10 14 14 C 1.53193 * 109.31517 * 181.38991 * 13 12 11 15 15 N 1.46927 * 108.77129 * 305.36261 * 14 13 12 16 16 C 1.36940 * 120.63079 * 233.58330 * 15 14 13 17 17 H 1.07996 * 119.99881 * 29.31264 * 16 15 14 18 18 C 1.38810 * 120.00019 * 209.30756 * 16 15 14 19 19 N 1.31624 * 119.99803 * 24.34685 * 18 16 15 20 20 Si 1.86801 * 120.00199 * 204.34637 * 18 16 15 21 21 H 1.48499 * 109.47165 * 180.02562 * 20 18 16 22 22 H 1.48498 * 109.47155 * 59.99883 * 20 18 16 23 23 H 1.48506 * 109.46826 * 300.00225 * 20 18 16 24 24 C 1.46931 * 118.73904 * 53.86573 * 15 14 13 25 25 C 1.53040 * 109.46150 * 295.06890 * 12 11 10 26 26 C 1.33869 * 118.72809 * 179.97438 * 2 1 3 27 27 O 1.21277 * 118.83441 * 1.90585 * 26 2 1 28 28 H 1.09000 * 109.47514 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47196 * 300.02419 * 1 2 3 30 30 H 1.09004 * 109.47286 * 60.02401 * 1 2 3 31 31 H 1.08997 * 109.39822 * 281.75221 * 3 2 1 32 32 H 1.09005 * 109.39868 * 41.56899 * 3 2 1 33 33 H 1.09003 * 109.60578 * 168.91676 * 4 3 2 34 34 H 1.09007 * 109.60468 * 289.24190 * 4 3 2 35 35 H 0.96999 * 119.99696 * 359.97438 * 10 8 6 36 36 H 1.08996 * 109.47495 * 60.00263 * 11 10 8 37 37 H 1.08998 * 109.47487 * 299.99303 * 11 10 8 38 38 H 1.09007 * 109.46004 * 55.02770 * 12 11 10 39 39 H 1.09002 * 109.50003 * 61.43521 * 13 12 11 40 40 H 1.09001 * 109.52671 * 301.35342 * 13 12 11 41 41 H 1.09000 * 109.58780 * 185.58431 * 14 13 12 42 42 H 1.08997 * 109.70543 * 65.21721 * 14 13 12 43 43 H 0.96995 * 120.00246 * 5.77739 * 19 18 16 44 44 H 1.09000 * 109.58527 * 65.92062 * 24 15 14 45 45 H 1.09003 * 109.58604 * 186.35046 * 24 15 14 46 46 H 1.09003 * 109.49715 * 298.56171 * 25 12 11 47 47 H 1.08998 * 109.49520 * 58.66252 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1672 1.2811 0.0000 4 6 3.6149 1.0822 0.4537 5 8 4.1833 -0.0025 -0.2897 6 6 3.6084 -1.2686 0.0424 7 1 3.9253 -1.5577 1.0444 8 6 4.0726 -2.3050 -0.9483 9 8 4.7419 -1.9734 -1.9039 10 7 3.7440 -3.6002 -0.7726 11 6 4.1958 -4.6076 -1.7354 12 6 3.6907 -5.9864 -1.3057 13 6 4.0556 -7.0191 -2.3747 14 6 3.5181 -8.3917 -1.9576 15 7 4.0230 -8.7091 -0.6148 16 6 4.6830 -9.8852 -0.3776 17 1 5.2481 -10.3562 -1.1682 18 6 4.6258 -10.4719 0.8791 19 7 3.6137 -10.2142 1.6803 20 14 5.9850 -11.6272 1.4334 21 1 5.6900 -12.1171 2.8038 22 1 7.2810 -10.9022 1.4346 23 1 6.0643 -12.7811 0.5020 24 6 3.8007 -7.7433 0.4700 25 6 4.3399 -6.3755 0.0245 26 6 2.1084 -1.1739 0.0005 27 8 1.4584 -2.1972 -0.0344 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5142 0.8898 30 1 -0.3634 0.5135 -0.8902 31 1 2.1575 1.6992 -1.0065 32 1 1.6666 1.9683 0.6822 33 1 4.1852 1.9921 0.2665 34 1 3.6359 0.8500 1.5185 35 1 3.2090 -3.8654 -0.0082 36 1 5.2852 -4.6147 -1.7697 37 1 3.8027 -4.3681 -2.7234 38 1 2.6077 -5.9552 -1.1856 39 1 5.1396 -7.0688 -2.4776 40 1 3.6126 -6.7292 -3.3275 41 1 3.8595 -9.1479 -2.6644 42 1 2.4284 -8.3706 -1.9427 43 1 2.8672 -9.6824 1.3629 44 1 2.7336 -7.6681 0.6793 45 1 4.3286 -8.0717 1.3654 46 1 5.4212 -6.4313 -0.1010 47 1 4.0988 -5.6272 0.7795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900827067.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:16 Heat of formation + Delta-G solvation = -86.686608 kcal Electronic energy + Delta-G solvation = -28571.509687 eV Core-core repulsion = 24562.211602 eV Total energy + Delta-G solvation = -4009.298085 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.45464 -39.41637 -38.26555 -37.82321 -35.85398 -35.05042 -33.05441 -31.13756 -30.57686 -29.90145 -29.44747 -27.09776 -25.87039 -24.31729 -23.78244 -22.36658 -21.20403 -20.80851 -19.71355 -19.14670 -18.42172 -17.88158 -17.34461 -17.19929 -16.37979 -15.94791 -15.63516 -15.10936 -14.83896 -14.66839 -14.31707 -14.09122 -14.04475 -13.69837 -13.48162 -13.45637 -13.26239 -13.18288 -12.76882 -12.59257 -12.46657 -12.37646 -11.85495 -11.79044 -11.58234 -11.20230 -10.87038 -10.67396 -10.38396 -10.26483 -10.10115 -10.01925 -9.92885 -9.81560 -9.69041 -9.30982 -9.21638 -8.99080 -8.33985 -6.83391 -6.02774 -3.20680 1.83045 2.09654 2.62640 2.65415 3.51770 3.54915 3.58834 3.72013 3.72960 4.13017 4.36670 4.46140 4.56480 4.62765 4.65488 4.87368 4.96330 4.98727 5.07832 5.16453 5.20042 5.28927 5.41216 5.41943 5.56179 5.70955 5.82788 5.88829 6.00708 6.06889 6.18603 6.22262 6.34949 6.44525 6.52475 6.55716 6.68627 6.72101 6.76512 6.88253 7.10668 7.23355 7.41655 7.52440 8.05548 8.10533 8.61915 9.16454 9.88681 10.34498 11.25066 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.022091 B = 0.002542 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.165665 B =11011.013152 C =11161.617289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.606 5.606 3 C 0.077 3.923 4 C 0.040 3.960 5 O -0.339 6.339 6 C 0.058 3.942 7 H 0.121 0.879 8 C 0.530 3.470 9 O -0.519 6.519 10 N -0.704 5.704 11 C 0.127 3.873 12 C -0.091 4.091 13 C -0.124 4.124 14 C 0.148 3.852 15 N -0.600 5.600 16 C -0.348 4.348 17 H 0.055 0.945 18 C -0.025 4.025 19 N -0.917 5.917 20 Si 1.064 2.936 21 H -0.286 1.286 22 H -0.293 1.293 23 H -0.293 1.293 24 C 0.152 3.848 25 C -0.130 4.130 26 C 0.498 3.502 27 O -0.521 6.521 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.124 0.876 34 H 0.068 0.932 35 H 0.409 0.591 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.015 0.985 43 H 0.268 0.732 44 H 0.016 0.984 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.281 26.046 -1.023 26.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.340 5.340 3 C -0.046 4.046 4 C -0.037 4.037 5 O -0.256 6.256 6 C -0.007 4.007 7 H 0.138 0.862 8 C 0.312 3.688 9 O -0.394 6.394 10 N -0.357 5.357 11 C 0.004 3.996 12 C -0.110 4.110 13 C -0.163 4.163 14 C 0.021 3.979 15 N -0.324 5.324 16 C -0.477 4.477 17 H 0.072 0.928 18 C -0.227 4.227 19 N -0.557 5.557 20 Si 0.894 3.106 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.220 1.220 24 C 0.026 3.974 25 C -0.169 4.169 26 C 0.283 3.717 27 O -0.397 6.397 28 H 0.113 0.887 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.142 0.858 34 H 0.086 0.914 35 H 0.245 0.755 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.033 0.967 43 H 0.079 0.921 44 H 0.034 0.966 45 H 0.096 0.904 46 H 0.079 0.921 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.411 24.814 -0.607 25.054 hybrid contribution -1.112 1.067 -0.740 1.709 sum -4.523 25.881 -1.348 26.307 Atomic orbital electron populations 1.21828 0.78382 1.05115 1.01636 1.47284 1.07849 1.05740 1.73162 1.22235 0.93471 0.85402 1.03464 1.23131 0.92662 0.91721 0.96215 1.88364 1.60440 1.13121 1.63654 1.22220 0.89639 0.87532 1.01287 0.86174 1.19257 0.80937 0.82883 0.85682 1.90742 1.38137 1.80453 1.30085 1.45916 1.54226 1.05909 1.29635 1.21585 0.99695 0.86762 0.91570 1.21301 1.00400 0.92063 0.97189 1.21968 1.01434 0.96671 0.96268 1.20884 0.95225 0.93279 0.88467 1.44129 1.66042 1.17925 1.04256 1.19972 1.26779 1.00633 1.00315 0.92761 1.25862 1.01364 1.00246 0.95238 1.70778 1.06356 1.38617 1.39987 0.83534 0.75328 0.75600 0.76114 1.21131 1.22069 1.22008 1.21017 0.96899 0.86725 0.92800 1.22211 1.00578 0.99101 0.95019 1.20387 0.90302 0.84020 0.76957 1.90782 1.66651 1.33360 1.48868 0.88732 0.91729 0.91819 0.90207 0.89120 0.85836 0.91398 0.75493 0.91267 0.91732 0.91077 0.91931 0.92796 0.92601 0.96673 0.92062 0.96565 0.90392 0.92079 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 10.58 59.85 0.63 1.13 16 2 N -0.61 -5.17 3.23 -182.30 -0.59 -5.75 16 3 C 0.08 0.40 6.69 -4.25 -0.03 0.37 16 4 C 0.04 0.22 6.89 37.17 0.26 0.48 16 5 O -0.34 -3.66 10.03 -55.11 -0.55 -4.21 16 6 C 0.06 0.66 3.31 -29.20 -0.10 0.56 16 7 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 8 C 0.53 7.91 7.06 -10.98 -0.08 7.83 16 9 O -0.52 -9.53 16.51 -14.33 -0.24 -9.76 16 10 N -0.70 -10.09 4.80 -60.30 -0.29 -10.38 16 11 C 0.13 1.93 5.06 -4.04 -0.02 1.91 16 12 C -0.09 -1.50 2.19 -90.58 -0.20 -1.70 16 13 C -0.12 -2.17 5.36 -26.61 -0.14 -2.31 16 14 C 0.15 3.15 6.51 -3.71 -0.02 3.13 16 15 N -0.60 -15.14 2.83 -172.05 -0.49 -15.62 16 16 C -0.35 -9.81 9.48 -15.06 -0.14 -9.95 16 17 H 0.05 1.54 7.94 -52.49 -0.42 1.12 16 18 C -0.03 -0.72 4.69 -17.43 -0.08 -0.80 16 19 N -0.92 -27.65 12.45 55.49 0.69 -26.96 16 20 Si 1.06 25.46 29.98 -169.99 -5.10 20.36 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.15 3.54 4.72 -3.48 -0.02 3.52 16 25 C -0.13 -2.40 5.26 -26.38 -0.14 -2.54 16 26 C 0.50 5.75 7.13 -11.56 -0.08 5.66 16 27 O -0.52 -7.42 14.37 5.56 0.08 -7.34 16 28 H 0.09 0.84 6.71 -51.93 -0.35 0.50 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.21 8.13 -51.93 -0.42 -0.22 16 33 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 35 H 0.41 5.52 6.73 -40.82 -0.27 5.25 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.27 8.16 6.71 -40.82 -0.27 7.88 16 44 H 0.02 0.39 7.85 -51.93 -0.41 -0.02 16 45 H 0.08 2.05 6.38 -51.93 -0.33 1.71 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.05 0.78 7.15 -51.93 -0.37 0.40 16 LS Contribution 371.80 15.07 5.60 5.60 Total: -1.00 -36.00 371.80 -8.59 -44.59 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.55 Total: 2.20 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -0.16 Total: 7.27 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: -0.67 Total: -58.71 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.71 Total: -21.31 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.10 Total: 20.36 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.00 -8.59 -44.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900827067.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.101 kcal (2) G-P(sol) polarization free energy of solvation -35.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds