Wall clock time and date at job start Fri Apr 10 2020 18:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46091 * 118.72743 * 2 1 4 4 C 1.53016 * 109.92416 * 161.61728 * 3 2 1 5 5 O 1.43257 * 108.66009 * 49.17543 * 4 3 2 6 6 C 1.42965 * 112.98336 * 291.62450 * 5 4 3 7 7 H 1.09004 * 109.36036 * 289.52481 * 6 5 4 8 8 C 1.50699 * 109.41737 * 169.69734 * 6 5 4 9 9 O 1.21289 * 119.99712 * 354.65286 * 8 6 5 10 10 N 1.34780 * 120.00523 * 174.65747 * 8 6 5 11 11 C 1.46494 * 119.99925 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.46892 * 179.97438 * 11 10 8 13 13 C 1.53041 * 109.46138 * 174.99850 * 12 11 10 14 14 C 1.53193 * 109.31517 * 181.38991 * 13 12 11 15 15 N 1.46927 * 108.77129 * 305.36261 * 14 13 12 16 16 C 1.36940 * 120.63079 * 233.58330 * 15 14 13 17 17 H 1.07996 * 119.99881 * 29.31264 * 16 15 14 18 18 C 1.38810 * 120.00019 * 209.30756 * 16 15 14 19 19 N 1.31624 * 119.99803 * 24.34685 * 18 16 15 20 20 Si 1.86801 * 120.00199 * 204.34637 * 18 16 15 21 21 H 1.48499 * 109.47165 * 180.02562 * 20 18 16 22 22 H 1.48498 * 109.47155 * 59.99883 * 20 18 16 23 23 H 1.48506 * 109.46826 * 300.00225 * 20 18 16 24 24 C 1.46931 * 118.73904 * 53.86573 * 15 14 13 25 25 C 1.53040 * 109.46150 * 295.06890 * 12 11 10 26 26 C 1.33869 * 118.72809 * 179.97438 * 2 1 3 27 27 O 1.21277 * 118.83441 * 1.90585 * 26 2 1 28 28 H 1.09000 * 109.47514 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47196 * 300.02419 * 1 2 3 30 30 H 1.09004 * 109.47286 * 60.02401 * 1 2 3 31 31 H 1.08997 * 109.39822 * 281.75221 * 3 2 1 32 32 H 1.09005 * 109.39868 * 41.56899 * 3 2 1 33 33 H 1.09003 * 109.60578 * 168.91676 * 4 3 2 34 34 H 1.09007 * 109.60468 * 289.24190 * 4 3 2 35 35 H 0.96999 * 119.99696 * 359.97438 * 10 8 6 36 36 H 1.08996 * 109.47495 * 60.00263 * 11 10 8 37 37 H 1.08998 * 109.47487 * 299.99303 * 11 10 8 38 38 H 1.09007 * 109.46004 * 55.02770 * 12 11 10 39 39 H 1.09002 * 109.50003 * 61.43521 * 13 12 11 40 40 H 1.09001 * 109.52671 * 301.35342 * 13 12 11 41 41 H 1.09000 * 109.58780 * 185.58431 * 14 13 12 42 42 H 1.08997 * 109.70543 * 65.21721 * 14 13 12 43 43 H 0.96995 * 120.00246 * 5.77739 * 19 18 16 44 44 H 1.09000 * 109.58527 * 65.92062 * 24 15 14 45 45 H 1.09003 * 109.58604 * 186.35046 * 24 15 14 46 46 H 1.09003 * 109.49715 * 298.56171 * 25 12 11 47 47 H 1.08998 * 109.49520 * 58.66252 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1672 1.2811 0.0000 4 6 3.6149 1.0822 0.4537 5 8 4.1833 -0.0025 -0.2897 6 6 3.6084 -1.2686 0.0424 7 1 3.9253 -1.5577 1.0444 8 6 4.0726 -2.3050 -0.9483 9 8 4.7419 -1.9734 -1.9039 10 7 3.7440 -3.6002 -0.7726 11 6 4.1958 -4.6076 -1.7354 12 6 3.6907 -5.9864 -1.3057 13 6 4.0556 -7.0191 -2.3747 14 6 3.5181 -8.3917 -1.9576 15 7 4.0230 -8.7091 -0.6148 16 6 4.6830 -9.8852 -0.3776 17 1 5.2481 -10.3562 -1.1682 18 6 4.6258 -10.4719 0.8791 19 7 3.6137 -10.2142 1.6803 20 14 5.9850 -11.6272 1.4334 21 1 5.6900 -12.1171 2.8038 22 1 7.2810 -10.9022 1.4346 23 1 6.0643 -12.7811 0.5020 24 6 3.8007 -7.7433 0.4700 25 6 4.3399 -6.3755 0.0245 26 6 2.1084 -1.1739 0.0005 27 8 1.4584 -2.1972 -0.0344 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5142 0.8898 30 1 -0.3634 0.5135 -0.8902 31 1 2.1575 1.6992 -1.0065 32 1 1.6666 1.9683 0.6822 33 1 4.1852 1.9921 0.2665 34 1 3.6359 0.8500 1.5185 35 1 3.2090 -3.8654 -0.0082 36 1 5.2852 -4.6147 -1.7697 37 1 3.8027 -4.3681 -2.7234 38 1 2.6077 -5.9552 -1.1856 39 1 5.1396 -7.0688 -2.4776 40 1 3.6126 -6.7292 -3.3275 41 1 3.8595 -9.1479 -2.6644 42 1 2.4284 -8.3706 -1.9427 43 1 2.8672 -9.6824 1.3629 44 1 2.7336 -7.6681 0.6793 45 1 4.3286 -8.0717 1.3654 46 1 5.4212 -6.4313 -0.1010 47 1 4.0988 -5.6272 0.7795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900827067.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:15 Heat of formation + Delta-G solvation = -112.276484 kcal Electronic energy + Delta-G solvation = -28572.619347 eV Core-core repulsion = 24562.211602 eV Total energy + Delta-G solvation = -4010.407746 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.26337 -40.55817 -39.50954 -38.90537 -36.63528 -36.53063 -34.70836 -32.52949 -31.66996 -31.47235 -30.31319 -28.36699 -26.98098 -25.52397 -24.83743 -23.99819 -22.80887 -21.97999 -20.82459 -20.39044 -19.44313 -19.15137 -18.72322 -18.02039 -17.23162 -16.76517 -16.61536 -16.35699 -16.13662 -15.92268 -15.51551 -15.40113 -15.35443 -15.13284 -15.03145 -14.76582 -14.26764 -14.09091 -13.95963 -13.66635 -13.44243 -13.42666 -13.32561 -13.12729 -12.65888 -12.51135 -12.40509 -12.06170 -11.91147 -11.89356 -11.81883 -11.70240 -11.38317 -11.16618 -11.01438 -10.65263 -10.46748 -10.20530 -9.92476 -8.92662 -8.23821 -5.41262 0.94318 1.24384 1.58140 1.65612 1.76810 1.79484 1.84625 2.65933 2.79275 3.05618 3.21661 3.39996 3.53885 3.69034 3.72760 3.79638 3.83750 3.94392 4.10208 4.27348 4.38341 4.40316 4.41020 4.51029 4.55283 4.59765 4.65489 4.65992 4.75151 4.78857 4.89159 4.90681 5.04366 5.08757 5.13452 5.14810 5.21489 5.23714 5.28376 5.53770 5.62572 5.84987 6.05386 6.32622 6.39870 6.72400 6.97887 7.07504 7.78589 8.23704 9.00030 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.022091 B = 0.002542 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.165665 B =11011.013152 C =11161.617289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.602 5.602 3 C 0.072 3.928 4 C 0.032 3.968 5 O -0.365 6.365 6 C 0.064 3.936 7 H 0.146 0.854 8 C 0.526 3.474 9 O -0.559 6.559 10 N -0.700 5.700 11 C 0.137 3.863 12 C -0.079 4.079 13 C -0.113 4.113 14 C 0.142 3.858 15 N -0.619 5.619 16 C -0.356 4.356 17 H 0.049 0.951 18 C -0.076 4.076 19 N -0.942 5.942 20 Si 1.115 2.885 21 H -0.291 1.291 22 H -0.280 1.280 23 H -0.276 1.276 24 C 0.157 3.843 25 C -0.116 4.116 26 C 0.490 3.510 27 O -0.559 6.559 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.128 0.872 33 H 0.151 0.849 34 H 0.085 0.915 35 H 0.413 0.587 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.051 0.949 42 H 0.014 0.986 43 H 0.254 0.746 44 H 0.005 0.995 45 H 0.043 0.957 46 H 0.053 0.947 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.034 28.560 -0.943 28.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.335 5.335 3 C -0.049 4.049 4 C -0.044 4.044 5 O -0.283 6.283 6 C 0.000 4.000 7 H 0.163 0.837 8 C 0.310 3.690 9 O -0.438 6.438 10 N -0.353 5.353 11 C 0.014 3.986 12 C -0.098 4.098 13 C -0.153 4.153 14 C 0.017 3.983 15 N -0.344 5.344 16 C -0.486 4.486 17 H 0.067 0.933 18 C -0.273 4.273 19 N -0.584 5.584 20 Si 0.939 3.061 21 H -0.217 1.217 22 H -0.206 1.206 23 H -0.202 1.202 24 C 0.031 3.969 25 C -0.155 4.155 26 C 0.276 3.724 27 O -0.438 6.438 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.146 0.854 33 H 0.168 0.832 34 H 0.104 0.896 35 H 0.251 0.749 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.069 0.931 42 H 0.032 0.968 43 H 0.063 0.937 44 H 0.023 0.977 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.185 27.394 -0.543 27.584 hybrid contribution -1.262 0.386 -0.805 1.546 sum -4.447 27.780 -1.348 28.166 Atomic orbital electron populations 1.21953 0.77480 1.04099 1.03686 1.47485 1.08664 1.06040 1.71330 1.22524 0.93396 0.84288 1.04737 1.23534 0.93043 0.91063 0.96785 1.88336 1.61190 1.13685 1.65110 1.22083 0.89625 0.87248 1.01028 0.83681 1.19866 0.80000 0.83368 0.85760 1.90712 1.39999 1.81111 1.31929 1.45892 1.53949 1.05957 1.29492 1.21362 0.99395 0.85946 0.91923 1.21145 1.00160 0.92733 0.95715 1.21835 1.01176 0.94437 0.97818 1.21037 0.95182 0.95466 0.86590 1.44396 1.66382 1.17687 1.05929 1.20226 1.26481 1.01542 1.00320 0.93345 1.27228 1.02624 1.01725 0.95686 1.70898 1.06955 1.40101 1.40473 0.82861 0.73163 0.74471 0.75593 1.21703 1.20612 1.20196 1.20887 0.95858 0.88773 0.91351 1.22026 0.99885 0.96737 0.96836 1.20459 0.90303 0.84543 0.77086 1.90760 1.67248 1.34770 1.51064 0.91279 0.88948 0.90422 0.89980 0.85362 0.83187 0.89634 0.74932 0.91571 0.91415 0.91052 0.92295 0.89757 0.93071 0.96771 0.93658 0.97742 0.93863 0.92820 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 10.58 127.77 1.35 2.16 16 2 N -0.60 -8.93 3.23 -849.58 -2.75 -11.68 16 3 C 0.07 0.50 6.69 86.46 0.58 1.08 16 4 C 0.03 0.25 6.89 71.99 0.50 0.74 16 5 O -0.37 -7.23 10.03 -129.98 -1.30 -8.53 16 6 C 0.06 1.38 3.31 28.99 0.10 1.47 16 7 H 0.15 2.25 8.14 -2.39 -0.02 2.23 16 8 C 0.53 15.32 7.06 87.66 0.62 15.93 16 9 O -0.56 -20.38 16.51 15.95 0.26 -20.12 16 10 N -0.70 -19.44 4.80 -463.07 -2.22 -21.66 16 11 C 0.14 4.00 5.06 86.38 0.44 4.44 16 12 C -0.08 -2.52 2.19 -10.77 -0.02 -2.55 16 13 C -0.11 -3.83 5.36 30.67 0.16 -3.66 16 14 C 0.14 6.07 6.51 86.36 0.56 6.64 16 15 N -0.62 -31.81 2.83 -698.23 -1.98 -33.79 16 16 C -0.36 -20.41 9.48 84.03 0.80 -19.61 16 17 H 0.05 2.78 7.94 -2.91 -0.02 2.76 16 18 C -0.08 -4.43 4.69 84.86 0.40 -4.03 16 19 N -0.94 -58.38 12.45 21.65 0.27 -58.11 16 20 Si 1.11 51.78 29.98 68.60 2.06 53.84 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 24 C 0.16 7.50 4.72 86.51 0.41 7.91 16 25 C -0.12 -4.25 5.26 30.82 0.16 -4.08 16 26 C 0.49 10.73 7.13 87.69 0.62 11.36 16 27 O -0.56 -15.76 14.37 -3.02 -0.04 -15.80 16 28 H 0.07 1.20 6.71 -2.39 -0.02 1.18 16 29 H 0.09 0.56 8.14 -2.38 -0.02 0.55 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.13 -0.03 8.13 -2.38 -0.02 -0.05 16 33 H 0.15 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.09 0.39 8.10 -2.38 -0.02 0.37 16 35 H 0.41 10.79 6.73 -92.71 -0.62 10.17 16 36 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 38 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 39 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.05 2.19 7.93 -2.39 -0.02 2.17 16 42 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.25 16.02 6.71 -92.71 -0.62 15.40 16 44 H 0.00 0.23 7.85 -2.39 -0.02 0.21 16 45 H 0.04 2.35 6.38 -2.39 -0.02 2.33 16 46 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.07 2.27 7.15 -2.39 -0.02 2.26 16 Total: -1.00 -80.92 371.80 1.46 -79.46 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.49 Total: 18.59 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 6.67 Total: 17.80 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -6.68 Total: -125.24 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -1.08 Total: -44.45 kcal Atomic # 14 Polarization: 51.78 SS G_CDS: 2.06 Total: 53.84 kcal Total: -80.92 1.46 -79.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900827067.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.818 kcal (2) G-P(sol) polarization free energy of solvation -80.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds