Wall clock time and date at job start Fri Apr 10 2020 18:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47228 * 2 1 4 4 C 1.45757 * 117.94565 * 270.02238 * 3 2 1 5 5 C 1.52924 * 110.48733 * 199.07173 * 4 3 2 6 6 C 1.53325 * 108.68679 * 309.25733 * 5 4 3 7 7 C 1.53061 * 108.43978 * 67.50448 * 6 5 4 8 8 H 1.09001 * 109.33323 * 71.19453 * 7 6 5 9 9 N 1.46497 * 109.40462 * 190.98136 * 7 6 5 10 10 C 1.34780 * 120.00495 * 205.42988 * 9 7 6 11 11 O 1.21585 * 119.99679 * 359.97438 * 10 9 7 12 12 N 1.34775 * 120.00383 * 179.97438 * 10 9 7 13 13 C 1.47019 * 125.64595 * 0.05357 * 12 10 9 14 14 C 1.54330 * 107.26866 * 181.01194 * 13 12 10 15 15 C 1.55157 * 102.94049 * 22.19588 * 14 13 12 16 16 O 1.42897 * 111.00581 * 82.57128 * 15 14 13 17 17 C 1.50701 * 111.00134 * 206.38239 * 15 14 13 18 18 H 1.07999 * 119.99977 * 359.97438 * 17 15 14 19 19 C 1.37879 * 119.99836 * 179.97438 * 17 15 14 20 20 N 1.31506 * 120.00087 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 119.99537 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47015 * 60.00648 * 21 19 17 23 23 H 1.48508 * 109.46829 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47613 * 300.00110 * 21 19 17 25 25 C 1.47426 * 125.65028 * 180.02562 * 12 10 9 26 26 C 1.33353 * 117.94890 * 89.99553 * 3 2 1 27 27 O 1.21276 * 118.24531 * 357.78023 * 26 3 2 28 28 H 1.08999 * 109.47216 * 299.99878 * 1 2 3 29 29 H 1.08999 * 109.47430 * 60.00442 * 1 2 3 30 30 H 1.09009 * 109.46845 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47033 * 239.99605 * 2 1 3 32 32 H 1.09004 * 109.47169 * 119.99932 * 2 1 3 33 33 H 1.08992 * 109.29927 * 319.38501 * 4 3 2 34 34 H 1.08997 * 109.30308 * 78.96812 * 4 3 2 35 35 H 1.08998 * 109.60163 * 69.00330 * 5 4 3 36 36 H 1.08989 * 109.60269 * 189.32486 * 5 4 3 37 37 H 1.09007 * 109.65866 * 307.77121 * 6 5 4 38 38 H 1.08996 * 109.67637 * 187.25134 * 6 5 4 39 39 H 0.97005 * 120.00146 * 25.42883 * 9 7 6 40 40 H 1.09000 * 109.88042 * 61.59824 * 13 12 10 41 41 H 1.08996 * 109.88551 * 300.42965 * 13 12 10 42 42 H 1.08996 * 110.71860 * 263.82642 * 14 13 12 43 43 H 1.09002 * 110.71679 * 140.55640 * 14 13 12 44 44 H 0.96695 * 114.00382 * 179.97438 * 16 15 14 45 45 H 0.97005 * 119.99970 * 179.97438 * 20 19 17 46 46 H 1.09004 * 110.36498 * 37.07621 * 25 12 10 47 47 H 1.09000 * 110.45813 * 274.80371 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2456 2.0253 -1.2876 5 6 3.1692 3.2333 -1.1261 6 6 2.6266 4.1194 0.0014 7 6 2.7708 3.3626 1.3239 8 1 3.8246 3.3124 1.5980 9 7 2.0285 4.0678 2.3717 10 6 2.3894 3.9293 3.6629 11 8 3.3307 3.2187 3.9581 12 7 1.7068 4.5785 4.6268 13 6 0.5535 5.4644 4.4114 14 6 0.1208 5.9975 5.7935 15 6 1.4047 5.8293 6.6483 16 8 2.3011 6.9238 6.4471 17 6 1.0651 5.6744 8.1083 18 1 0.0335 5.6910 8.4275 19 6 2.0714 5.5114 9.0367 20 7 3.3276 5.4917 8.6481 21 14 1.6504 5.3201 10.8465 22 1 0.7941 4.1211 11.0315 23 1 2.9010 5.1618 11.6316 24 1 0.9216 6.5260 11.3154 25 6 1.9927 4.5175 6.0718 26 6 2.2266 1.9704 1.1780 27 8 1.9628 1.3488 2.1853 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.7030 1.3110 -1.9720 34 1 1.2918 2.3572 -1.6978 35 1 4.1738 2.8943 -0.8732 36 1 3.1978 3.7988 -2.0574 37 1 1.5753 4.3424 -0.1811 38 1 3.1966 5.0474 0.0455 39 1 1.2772 4.6345 2.1362 40 1 -0.2642 4.9046 3.9574 41 1 0.8395 6.2953 3.7665 42 1 -0.6943 5.3988 6.1999 43 1 -0.1651 7.0474 5.7296 44 1 3.1179 6.8629 6.9610 45 1 4.0356 5.3774 9.3013 46 1 3.0682 4.4758 6.2442 47 1 1.5034 3.6532 6.5208 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925982387.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:26 Heat of formation + Delta-G solvation = -105.067765 kcal Electronic energy + Delta-G solvation = -29177.555181 eV Core-core repulsion = 25167.460029 eV Total energy + Delta-G solvation = -4010.095152 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.84814 -39.29983 -37.31832 -36.57349 -35.38415 -34.15869 -32.96043 -32.08830 -30.36600 -29.97250 -28.73507 -27.64944 -25.23060 -24.51394 -23.48981 -22.33175 -22.17462 -19.60876 -19.48176 -18.76406 -17.55928 -17.05525 -16.89508 -16.71516 -16.13391 -15.31581 -15.03278 -14.89617 -14.42794 -14.22084 -14.15151 -14.00669 -13.83198 -13.62772 -13.11097 -12.96747 -12.75346 -12.65907 -12.29733 -12.07574 -11.99545 -11.71055 -11.57208 -11.55796 -11.39116 -11.22338 -11.08934 -10.97586 -10.73789 -10.52607 -10.45232 -10.12679 -9.93609 -9.50724 -9.32189 -8.83555 -8.71702 -8.62286 -8.30658 -7.58366 -6.23231 -4.32675 2.54754 2.83084 3.24722 3.29347 3.31830 3.34159 3.88925 4.29220 4.35892 4.40479 4.42114 4.47303 4.66738 4.91212 4.99666 5.03801 5.04136 5.13667 5.20021 5.27612 5.44523 5.46790 5.49474 5.52533 5.65520 5.72081 5.80006 5.82537 5.87990 6.01788 6.08753 6.18457 6.35050 6.57493 6.67317 6.76993 6.96656 7.04648 7.30751 7.37703 7.39851 7.68783 7.80513 8.06877 8.24307 8.62024 8.71652 9.26124 9.36844 9.52372 10.84043 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.022592 B = 0.002976 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.052285 B = 9406.480590 C = 9762.706585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 N -0.610 5.610 4 C 0.114 3.886 5 C -0.132 4.132 6 C -0.130 4.130 7 C 0.159 3.841 8 H 0.117 0.883 9 N -0.735 5.735 10 C 0.723 3.277 11 O -0.583 6.583 12 N -0.626 5.626 13 C 0.106 3.894 14 C -0.116 4.116 15 C 0.250 3.750 16 O -0.585 6.585 17 C -0.538 4.538 18 H 0.066 0.934 19 C 0.071 3.929 20 N -0.894 5.894 21 Si 0.905 3.095 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.114 3.886 26 C 0.496 3.504 27 O -0.515 6.515 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.395 0.605 40 H 0.048 0.952 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.386 0.614 45 H 0.271 0.729 46 H 0.080 0.920 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.613 -4.154 -22.960 23.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.019 4.019 3 N -0.346 5.346 4 C -0.009 4.009 5 C -0.171 4.171 6 C -0.168 4.168 7 C 0.049 3.951 8 H 0.135 0.865 9 N -0.392 5.392 10 C 0.426 3.574 11 O -0.460 6.460 12 N -0.363 5.363 13 C -0.017 4.017 14 C -0.154 4.154 15 C 0.209 3.791 16 O -0.395 6.395 17 C -0.577 4.577 18 H 0.084 0.916 19 C -0.132 4.132 20 N -0.533 5.533 21 Si 0.732 3.268 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.008 4.008 26 C 0.281 3.719 27 O -0.389 6.389 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.229 0.771 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.238 0.762 45 H 0.082 0.918 46 H 0.098 0.902 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.267 -4.853 -22.515 23.262 hybrid contribution -0.176 -0.155 1.063 1.089 sum -3.443 -5.008 -21.452 22.296 Atomic orbital electron populations 1.22077 0.95944 1.02075 1.02191 1.21450 0.94566 0.82791 1.03045 1.47501 1.66666 1.14643 1.05804 1.21393 0.99433 0.95119 0.84940 1.21843 0.99781 0.95903 0.99525 1.21952 1.02860 0.99423 0.92555 1.20497 0.98544 0.88133 0.87887 0.86519 1.44844 1.37181 1.52416 1.04790 1.15388 0.82269 0.80088 0.79692 1.90887 1.30848 1.43097 1.81157 1.47828 1.32426 1.48110 1.07942 1.21908 0.87905 0.92592 0.99344 1.22594 0.98990 1.00775 0.93038 1.19587 0.85123 0.82364 0.92061 1.86046 1.34873 1.47102 1.71473 1.21459 0.93800 1.51346 0.91050 0.91552 1.25082 0.94893 0.93410 0.99846 1.69561 0.99141 1.49318 1.35297 0.86443 0.77831 0.78797 0.83711 1.20003 1.21077 1.20032 1.23119 1.02496 1.00450 0.74730 1.20885 0.78518 0.89627 0.82833 1.90777 1.49220 1.63382 1.35484 0.92115 0.92866 0.91777 0.90886 0.89679 0.90689 0.91874 0.90463 0.89161 0.90624 0.89570 0.77120 0.93368 0.92718 0.90542 0.90795 0.76207 0.91835 0.90173 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 10.23 37.16 0.38 -1.15 16 2 C 0.10 1.04 5.92 -4.04 -0.02 1.01 16 3 N -0.61 -6.54 2.81 -174.96 -0.49 -7.03 16 4 C 0.11 0.73 6.39 -4.48 -0.03 0.71 16 5 C -0.13 -0.77 6.02 -26.60 -0.16 -0.93 16 6 C -0.13 -1.05 5.51 -26.53 -0.15 -1.19 16 7 C 0.16 2.17 2.70 -69.30 -0.19 1.99 16 8 H 0.12 1.80 7.57 -51.93 -0.39 1.40 16 9 N -0.74 -11.92 4.92 -60.03 -0.30 -12.21 16 10 C 0.72 15.89 7.92 -86.92 -0.69 15.20 16 11 O -0.58 -15.23 15.83 4.35 0.07 -15.16 16 12 N -0.63 -13.85 3.33 -176.25 -0.59 -14.44 16 13 C 0.11 1.94 6.15 -3.06 -0.02 1.92 16 14 C -0.12 -2.37 6.13 -24.89 -0.15 -2.52 16 15 C 0.25 6.22 0.89 -89.64 -0.08 6.14 16 16 O -0.58 -15.32 13.18 -35.23 -0.46 -15.78 16 17 C -0.54 -14.32 8.25 -34.44 -0.28 -14.60 16 18 H 0.07 1.72 7.76 -52.49 -0.41 1.31 16 19 C 0.07 1.89 5.29 -17.82 -0.09 1.79 16 20 N -0.89 -24.46 10.71 55.43 0.59 -23.86 16 21 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 C 0.11 2.91 5.62 -2.54 -0.01 2.89 16 26 C 0.50 7.46 7.19 -11.87 -0.09 7.37 16 27 O -0.52 -10.50 15.01 4.62 0.07 -10.43 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 31 H 0.07 0.51 7.86 -51.93 -0.41 0.10 16 32 H 0.08 1.07 7.20 -51.93 -0.37 0.69 16 33 H 0.07 0.35 7.92 -51.93 -0.41 -0.06 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.49 8.12 -51.93 -0.42 0.06 16 36 H 0.09 0.31 8.14 -51.94 -0.42 -0.11 16 37 H 0.08 0.54 8.10 -51.92 -0.42 0.12 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.39 5.30 7.57 -40.82 -0.31 4.99 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.08 1.48 8.01 -51.93 -0.42 1.06 16 43 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.39 10.50 6.93 45.56 0.32 10.81 16 45 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.08 2.29 7.64 -51.93 -0.40 1.89 16 47 H 0.06 1.49 8.03 -51.93 -0.42 1.07 16 LS Contribution 375.16 15.07 5.65 5.65 Total: -1.00 -35.18 375.16 -9.06 -44.23 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -7.00 Total: 14.64 kcal Atomic # 6 Polarization: 20.21 SS G_CDS: -1.58 Total: 18.63 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.78 Total: -57.54 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -0.33 Total: -41.38 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.18 -9.06 -44.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925982387.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.836 kcal (2) G-P(sol) polarization free energy of solvation -35.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds