Wall clock time and date at job start Fri Apr 10 2020 18:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47228 * 2 1 4 4 C 1.45757 * 117.94565 * 270.02238 * 3 2 1 5 5 C 1.52924 * 110.48733 * 199.07173 * 4 3 2 6 6 C 1.53325 * 108.68679 * 309.25733 * 5 4 3 7 7 C 1.53061 * 108.43978 * 67.50448 * 6 5 4 8 8 H 1.09001 * 109.33323 * 71.19453 * 7 6 5 9 9 N 1.46497 * 109.40462 * 190.98136 * 7 6 5 10 10 C 1.34780 * 120.00495 * 205.42988 * 9 7 6 11 11 O 1.21585 * 119.99679 * 359.97438 * 10 9 7 12 12 N 1.34775 * 120.00383 * 179.97438 * 10 9 7 13 13 C 1.47019 * 125.64595 * 0.05357 * 12 10 9 14 14 C 1.54330 * 107.26866 * 181.01194 * 13 12 10 15 15 C 1.55157 * 102.94049 * 22.19588 * 14 13 12 16 16 O 1.42897 * 111.00581 * 82.57128 * 15 14 13 17 17 C 1.50701 * 111.00134 * 206.38239 * 15 14 13 18 18 H 1.07999 * 119.99977 * 359.97438 * 17 15 14 19 19 C 1.37879 * 119.99836 * 179.97438 * 17 15 14 20 20 N 1.31506 * 120.00087 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 119.99537 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47015 * 60.00648 * 21 19 17 23 23 H 1.48508 * 109.46829 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47613 * 300.00110 * 21 19 17 25 25 C 1.47426 * 125.65028 * 180.02562 * 12 10 9 26 26 C 1.33353 * 117.94890 * 89.99553 * 3 2 1 27 27 O 1.21276 * 118.24531 * 357.78023 * 26 3 2 28 28 H 1.08999 * 109.47216 * 299.99878 * 1 2 3 29 29 H 1.08999 * 109.47430 * 60.00442 * 1 2 3 30 30 H 1.09009 * 109.46845 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47033 * 239.99605 * 2 1 3 32 32 H 1.09004 * 109.47169 * 119.99932 * 2 1 3 33 33 H 1.08992 * 109.29927 * 319.38501 * 4 3 2 34 34 H 1.08997 * 109.30308 * 78.96812 * 4 3 2 35 35 H 1.08998 * 109.60163 * 69.00330 * 5 4 3 36 36 H 1.08989 * 109.60269 * 189.32486 * 5 4 3 37 37 H 1.09007 * 109.65866 * 307.77121 * 6 5 4 38 38 H 1.08996 * 109.67637 * 187.25134 * 6 5 4 39 39 H 0.97005 * 120.00146 * 25.42883 * 9 7 6 40 40 H 1.09000 * 109.88042 * 61.59824 * 13 12 10 41 41 H 1.08996 * 109.88551 * 300.42965 * 13 12 10 42 42 H 1.08996 * 110.71860 * 263.82642 * 14 13 12 43 43 H 1.09002 * 110.71679 * 140.55640 * 14 13 12 44 44 H 0.96695 * 114.00382 * 179.97438 * 16 15 14 45 45 H 0.97005 * 119.99970 * 179.97438 * 20 19 17 46 46 H 1.09004 * 110.36498 * 37.07621 * 25 12 10 47 47 H 1.09000 * 110.45813 * 274.80371 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2456 2.0253 -1.2876 5 6 3.1692 3.2333 -1.1261 6 6 2.6266 4.1194 0.0014 7 6 2.7708 3.3626 1.3239 8 1 3.8246 3.3124 1.5980 9 7 2.0285 4.0678 2.3717 10 6 2.3894 3.9293 3.6629 11 8 3.3307 3.2187 3.9581 12 7 1.7068 4.5785 4.6268 13 6 0.5535 5.4644 4.4114 14 6 0.1208 5.9975 5.7935 15 6 1.4047 5.8293 6.6483 16 8 2.3011 6.9238 6.4471 17 6 1.0651 5.6744 8.1083 18 1 0.0335 5.6910 8.4275 19 6 2.0714 5.5114 9.0367 20 7 3.3276 5.4917 8.6481 21 14 1.6504 5.3201 10.8465 22 1 0.7941 4.1211 11.0315 23 1 2.9010 5.1618 11.6316 24 1 0.9216 6.5260 11.3154 25 6 1.9927 4.5175 6.0718 26 6 2.2266 1.9704 1.1780 27 8 1.9628 1.3488 2.1853 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.7030 1.3110 -1.9720 34 1 1.2918 2.3572 -1.6978 35 1 4.1738 2.8943 -0.8732 36 1 3.1978 3.7988 -2.0574 37 1 1.5753 4.3424 -0.1811 38 1 3.1966 5.0474 0.0455 39 1 1.2772 4.6345 2.1362 40 1 -0.2642 4.9046 3.9574 41 1 0.8395 6.2953 3.7665 42 1 -0.6943 5.3988 6.1999 43 1 -0.1651 7.0474 5.7296 44 1 3.1179 6.8629 6.9610 45 1 4.0356 5.3774 9.3013 46 1 3.0682 4.4758 6.2442 47 1 1.5034 3.6532 6.5208 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925982387.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:26 Heat of formation + Delta-G solvation = -133.174184 kcal Electronic energy + Delta-G solvation = -29178.773967 eV Core-core repulsion = 25167.460029 eV Total energy + Delta-G solvation = -4011.313938 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.97802 -40.88790 -39.07251 -37.56858 -36.57262 -36.06821 -34.16228 -34.08122 -31.85525 -30.96188 -29.93987 -29.37074 -26.96997 -25.51713 -24.64488 -23.78634 -22.94476 -21.46941 -21.05380 -19.82585 -19.20244 -18.77891 -18.04649 -17.77078 -17.28362 -17.02856 -16.59734 -16.37265 -16.19771 -15.55109 -15.20456 -14.99522 -14.89325 -14.69715 -14.65223 -14.56065 -14.28974 -13.77408 -13.50820 -13.49868 -13.35351 -13.08068 -12.88450 -12.81502 -12.52269 -12.42625 -12.33217 -12.25538 -12.24441 -12.11306 -11.99930 -11.77065 -11.35275 -11.22916 -11.15489 -10.65140 -10.34728 -10.09820 -9.71246 -9.35223 -8.26295 -6.43676 1.30634 1.42833 1.43835 1.51979 1.82247 1.94786 2.29507 2.37694 2.99474 3.05396 3.53146 3.63602 3.79019 3.82059 3.99502 4.10054 4.14296 4.16254 4.24130 4.32048 4.36455 4.45219 4.55561 4.59514 4.67158 4.73240 4.79267 4.82396 4.99911 5.03225 5.05681 5.07301 5.08229 5.22635 5.25660 5.29986 5.37103 5.40822 5.44146 5.55971 5.75749 6.00095 6.11842 6.44848 6.63303 7.03777 7.18402 7.29000 7.38497 7.58455 8.79321 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.022592 B = 0.002976 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.052285 B = 9406.480590 C = 9762.706585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.099 3.901 3 N -0.598 5.598 4 C 0.103 3.897 5 C -0.127 4.127 6 C -0.119 4.119 7 C 0.153 3.847 8 H 0.090 0.910 9 N -0.715 5.715 10 C 0.716 3.284 11 O -0.636 6.636 12 N -0.634 5.634 13 C 0.107 3.893 14 C -0.110 4.110 15 C 0.235 3.765 16 O -0.587 6.587 17 C -0.558 4.558 18 H 0.071 0.929 19 C 0.023 3.977 20 N -0.919 5.919 21 Si 0.968 3.032 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.265 1.265 25 C 0.128 3.872 26 C 0.489 3.511 27 O -0.585 6.585 28 H 0.023 0.977 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.048 0.952 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.130 0.870 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.411 0.589 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.377 0.623 45 H 0.271 0.729 46 H 0.036 0.964 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.479 -3.252 -26.481 27.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.024 4.024 3 N -0.332 5.332 4 C -0.018 4.018 5 C -0.165 4.165 6 C -0.157 4.157 7 C 0.044 3.956 8 H 0.108 0.892 9 N -0.372 5.372 10 C 0.418 3.582 11 O -0.517 6.517 12 N -0.370 5.370 13 C -0.014 4.014 14 C -0.147 4.147 15 C 0.195 3.805 16 O -0.397 6.397 17 C -0.596 4.596 18 H 0.090 0.910 19 C -0.177 4.177 20 N -0.558 5.558 21 Si 0.793 3.207 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.190 1.190 25 C 0.004 3.996 26 C 0.275 3.725 27 O -0.464 6.464 28 H 0.042 0.958 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.132 0.868 32 H 0.066 0.934 33 H 0.121 0.879 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.148 0.852 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.249 0.751 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.228 0.772 45 H 0.080 0.920 46 H 0.054 0.946 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -5.187 -3.914 -26.167 26.962 hybrid contribution 0.428 -0.498 2.049 2.151 sum -4.759 -4.412 -24.119 24.976 Atomic orbital electron populations 1.22008 0.95203 1.02827 1.01425 1.21593 0.95180 0.82425 1.03165 1.47611 1.64526 1.14825 1.06210 1.21845 1.01211 0.95920 0.82800 1.21910 0.98958 0.95569 1.00063 1.21998 1.04563 0.99485 0.89613 1.20801 0.96586 0.88553 0.89700 0.89197 1.44637 1.37409 1.52022 1.03106 1.15689 0.81741 0.79504 0.81294 1.90838 1.33249 1.45274 1.82368 1.47803 1.33663 1.48949 1.06621 1.22119 0.87415 0.93106 0.98810 1.22594 0.96791 1.02242 0.93114 1.19804 0.86672 0.81576 0.92487 1.86031 1.34671 1.47655 1.71298 1.21824 0.94124 1.51431 0.92258 0.91046 1.25889 0.94776 0.93097 1.03982 1.69688 0.99918 1.49862 1.36364 0.85457 0.77528 0.78954 0.78795 1.19732 1.21048 1.18995 1.22669 0.99370 1.00224 0.77340 1.21119 0.78149 0.89885 0.83317 1.90752 1.52597 1.64960 1.38091 0.95795 0.90434 0.90421 0.86846 0.93382 0.87871 0.89418 0.91240 0.85224 0.88702 0.88366 0.75137 0.89970 0.90196 0.89582 0.89126 0.77248 0.91992 0.94553 0.94935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 10.23 71.98 0.74 -1.95 16 2 C 0.10 1.85 5.92 86.38 0.51 2.36 16 3 N -0.60 -11.83 2.81 -826.65 -2.32 -14.15 16 4 C 0.10 0.87 6.39 86.49 0.55 1.42 16 5 C -0.13 -0.94 6.02 30.68 0.18 -0.76 16 6 C -0.12 -1.54 5.51 30.72 0.17 -1.37 16 7 C 0.15 4.15 2.70 44.10 0.12 4.27 16 8 H 0.09 2.93 7.57 -2.39 -0.02 2.91 16 9 N -0.71 -23.07 4.92 -462.11 -2.27 -25.34 16 10 C 0.72 32.67 7.92 179.05 1.42 34.09 16 11 O -0.64 -35.63 15.83 -3.08 -0.05 -35.68 16 12 N -0.63 -28.69 3.33 -829.80 -2.76 -31.45 16 13 C 0.11 3.73 6.15 86.73 0.53 4.27 16 14 C -0.11 -4.32 6.13 31.78 0.19 -4.13 16 15 C 0.24 11.95 0.89 -10.16 -0.01 11.94 16 16 O -0.59 -31.43 13.18 -148.98 -1.96 -33.40 16 17 C -0.56 -30.16 8.25 25.60 0.21 -29.95 16 18 H 0.07 3.69 7.76 -2.91 -0.02 3.67 16 19 C 0.02 1.25 5.29 84.66 0.45 1.70 16 20 N -0.92 -52.28 10.71 21.45 0.23 -52.05 16 21 Si 0.97 43.23 29.54 68.60 2.03 45.25 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 C 0.13 6.87 5.62 86.85 0.49 7.35 16 26 C 0.49 14.94 7.19 87.72 0.63 15.57 16 27 O -0.58 -25.41 15.01 -2.11 -0.03 -25.45 16 28 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 1.10 8.14 -2.38 -0.02 1.09 16 31 H 0.11 1.21 7.86 -2.39 -0.02 1.19 16 32 H 0.05 1.27 7.20 -2.38 -0.02 1.25 16 33 H 0.10 0.40 7.92 -2.39 -0.02 0.38 16 34 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.07 0.67 8.12 -2.39 -0.02 0.65 16 36 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 37 H 0.09 0.93 8.10 -2.38 -0.02 0.91 16 38 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.41 10.23 7.57 -92.70 -0.70 9.53 16 40 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.09 3.20 8.01 -2.39 -0.02 3.18 16 43 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 44 H 0.38 21.40 6.93 -74.06 -0.51 20.88 16 45 H 0.27 14.77 8.31 -92.70 -0.77 14.00 16 46 H 0.04 2.23 7.64 -2.38 -0.02 2.21 16 47 H 0.03 1.84 8.03 -2.39 -0.02 1.82 16 Total: -1.00 -85.41 375.16 -1.19 -86.60 By element: Atomic # 1 Polarization: 41.09 SS G_CDS: -0.23 Total: 40.85 kcal Atomic # 6 Polarization: 38.62 SS G_CDS: 6.19 Total: 44.80 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -7.13 Total: -122.99 kcal Atomic # 8 Polarization: -92.48 SS G_CDS: -2.04 Total: -94.52 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -85.41 -1.19 -86.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925982387.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.578 kcal (2) G-P(sol) polarization free energy of solvation -85.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds