Wall clock time and date at job start Fri Apr 10 2020 18:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47047 * 2 1 4 4 C 1.45751 * 117.95026 * 270.02343 * 3 2 1 5 5 C 1.52917 * 110.49011 * 160.92555 * 4 3 2 6 6 C 1.53356 * 108.66207 * 50.76242 * 5 4 3 7 7 C 1.53070 * 108.41154 * 292.44556 * 6 5 4 8 8 H 1.08998 * 109.33064 * 288.81989 * 7 6 5 9 9 N 1.46509 * 109.39898 * 169.04092 * 7 6 5 10 10 C 1.34779 * 119.99795 * 154.57550 * 9 7 6 11 11 O 1.21578 * 120.00186 * 359.97438 * 10 9 7 12 12 N 1.34780 * 119.99572 * 179.97438 * 10 9 7 13 13 C 1.47024 * 125.64847 * 359.68614 * 12 10 9 14 14 C 1.54327 * 107.26774 * 179.20685 * 13 12 10 15 15 C 1.55155 * 102.94571 * 337.80617 * 14 13 12 16 16 O 1.42904 * 111.00600 * 277.43113 * 15 14 13 17 17 C 1.50698 * 111.03860 * 153.58728 * 15 14 13 18 18 H 1.07996 * 119.99981 * 6.33913 * 17 15 14 19 19 C 1.37874 * 120.00106 * 186.33083 * 17 15 14 20 20 N 1.31512 * 119.99898 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00200 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47032 * 89.99869 * 21 19 17 23 23 H 1.48495 * 109.47425 * 210.00359 * 21 19 17 24 24 H 1.48503 * 109.47121 * 330.00352 * 21 19 17 25 25 C 1.47426 * 125.64645 * 179.97438 * 12 10 9 26 26 C 1.33356 * 117.94334 * 90.00168 * 3 2 1 27 27 O 1.21276 * 118.24667 * 2.21911 * 26 3 2 28 28 H 1.08994 * 109.47000 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46837 * 299.99671 * 1 2 3 30 30 H 1.09004 * 109.47232 * 59.99733 * 1 2 3 31 31 H 1.09007 * 109.46774 * 240.00556 * 2 1 3 32 32 H 1.08992 * 109.47007 * 120.00643 * 2 1 3 33 33 H 1.08999 * 109.30412 * 281.24093 * 4 3 2 34 34 H 1.09007 * 109.30162 * 40.60774 * 4 3 2 35 35 H 1.09002 * 109.60530 * 170.51221 * 5 4 3 36 36 H 1.08999 * 109.60163 * 290.82929 * 5 4 3 37 37 H 1.09000 * 109.67205 * 172.72098 * 6 5 4 38 38 H 1.09001 * 109.69221 * 52.18075 * 6 5 4 39 39 H 0.97004 * 119.99661 * 334.56808 * 9 7 6 40 40 H 1.08995 * 109.88316 * 298.62177 * 13 12 10 41 41 H 1.09002 * 109.88101 * 59.79072 * 13 12 10 42 42 H 1.08999 * 110.71564 * 219.44370 * 14 13 12 43 43 H 1.08996 * 110.72159 * 96.17410 * 14 13 12 44 44 H 0.96692 * 114.00320 * 173.64830 * 16 15 14 45 45 H 0.96998 * 120.00066 * 179.97438 * 20 19 17 46 46 H 1.09002 * 110.36518 * 322.69812 * 25 12 10 47 47 H 1.08997 * 110.36787 * 85.02191 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2456 2.0255 -1.2875 5 6 2.2865 3.5455 -1.1256 6 6 3.2670 3.8928 0.0013 7 6 2.6792 3.3948 1.3240 8 1 1.8287 4.0188 1.5985 9 7 3.7004 3.4761 2.3715 10 6 3.3331 3.5952 3.6628 11 8 2.1545 3.6356 3.9584 12 7 4.2725 3.6695 4.6264 13 6 5.7262 3.6263 4.4110 14 6 6.3984 3.7641 5.7933 15 6 5.2976 4.4450 6.6488 16 8 5.2956 5.8600 6.4491 17 6 5.4615 4.1086 8.1086 18 1 6.3264 3.5538 8.4411 19 6 4.5074 4.5091 9.0197 20 7 3.4540 5.1844 8.6148 21 14 4.7108 4.0928 10.8293 22 1 5.4579 5.1826 11.5070 23 1 3.3731 3.9451 11.4567 24 1 5.4634 2.8195 10.9627 25 6 4.0124 3.8014 6.0715 26 6 2.2267 1.9704 1.1781 27 8 2.0410 1.3210 2.1854 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.1939 1.6815 -1.7002 34 1 1.4403 1.7575 -1.9716 35 1 2.6218 4.0035 -2.0562 36 1 1.2917 3.9135 -0.8748 37 1 3.4075 4.9728 0.0456 38 1 4.2244 3.4049 -0.1816 39 1 4.6407 3.4441 2.1356 40 1 6.0055 2.6760 3.9561 41 1 6.0302 4.4515 3.7670 42 1 7.2840 4.3965 5.7301 43 1 6.6511 2.7844 6.1987 44 1 4.5648 6.3179 6.8863 45 1 2.7825 5.4659 9.2557 46 1 3.1530 4.4493 6.2447 47 1 3.8457 2.8212 6.5180 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925982388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:29 Heat of formation + Delta-G solvation = -104.912639 kcal Electronic energy + Delta-G solvation = -29154.219463 eV Core-core repulsion = 25144.131038 eV Total energy + Delta-G solvation = -4010.088426 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.84486 -39.29978 -37.32549 -36.57171 -35.38171 -34.13128 -32.93873 -32.16444 -30.35826 -29.97771 -28.73352 -27.60333 -25.23231 -24.54669 -23.51772 -22.33616 -22.00807 -19.61975 -19.51069 -18.88838 -17.52924 -16.97719 -16.90498 -16.64141 -16.24012 -15.10789 -15.06264 -14.81737 -14.59204 -14.39556 -14.02726 -13.95582 -13.89907 -13.63717 -13.08719 -12.96730 -12.72359 -12.66167 -12.20771 -12.08528 -12.02328 -11.75579 -11.58974 -11.55172 -11.36188 -11.26194 -11.06340 -10.97928 -10.74893 -10.53461 -10.41210 -10.13720 -9.93418 -9.48838 -9.28889 -8.82615 -8.70866 -8.63144 -8.28596 -7.58867 -6.20854 -4.30487 2.56233 2.81471 3.24569 3.30445 3.33518 3.36046 3.89486 4.30501 4.36663 4.40551 4.42251 4.47677 4.67093 4.91205 4.96840 5.05150 5.06186 5.14675 5.22235 5.25877 5.44776 5.46688 5.49172 5.54139 5.65647 5.72188 5.79776 5.82483 5.86220 6.02861 6.06954 6.18720 6.35283 6.57890 6.67537 6.77127 6.98473 7.05130 7.31952 7.37895 7.40646 7.70795 7.81250 8.10603 8.24712 8.62877 8.74077 9.26712 9.36636 9.44667 10.86211 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.022456 B = 0.002993 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.573386 B = 9352.807383 C = 9909.239210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.103 3.897 3 N -0.610 5.610 4 C 0.114 3.886 5 C -0.132 4.132 6 C -0.130 4.130 7 C 0.159 3.841 8 H 0.117 0.883 9 N -0.736 5.736 10 C 0.723 3.277 11 O -0.582 6.582 12 N -0.628 5.628 13 C 0.106 3.894 14 C -0.115 4.115 15 C 0.248 3.752 16 O -0.583 6.583 17 C -0.537 4.537 18 H 0.066 0.934 19 C 0.071 3.929 20 N -0.891 5.891 21 Si 0.903 3.097 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.116 3.884 26 C 0.496 3.504 27 O -0.516 6.516 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.395 0.605 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.381 0.619 45 H 0.270 0.730 46 H 0.085 0.915 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.246 -4.990 -23.090 23.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.019 4.019 3 N -0.346 5.346 4 C -0.009 4.009 5 C -0.170 4.170 6 C -0.168 4.168 7 C 0.049 3.951 8 H 0.135 0.865 9 N -0.393 5.393 10 C 0.425 3.575 11 O -0.459 6.459 12 N -0.365 5.365 13 C -0.018 4.018 14 C -0.153 4.153 15 C 0.207 3.793 16 O -0.391 6.391 17 C -0.576 4.576 18 H 0.084 0.916 19 C -0.132 4.132 20 N -0.530 5.530 21 Si 0.731 3.269 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.006 4.006 26 C 0.281 3.719 27 O -0.389 6.389 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.229 0.771 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.230 0.770 45 H 0.080 0.920 46 H 0.103 0.897 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.910 -5.341 -22.598 23.238 hybrid contribution -0.074 -0.212 1.023 1.047 sum -0.984 -5.553 -21.575 22.300 Atomic orbital electron populations 1.22094 0.95916 1.02119 1.02299 1.21429 0.94517 0.82900 1.03080 1.47501 1.66872 1.14472 1.05795 1.21377 1.01478 0.93039 0.85008 1.21839 1.00798 0.94835 0.99539 1.21961 0.99369 1.02898 0.92564 1.20502 0.93914 0.92753 0.87894 0.86539 1.44852 1.08391 1.81224 1.04801 1.15386 0.84641 0.77740 0.79687 1.90887 1.15825 1.58071 1.81134 1.47876 1.04885 1.75638 1.08054 1.21912 0.81570 0.99003 0.99312 1.22580 0.98854 1.00880 0.93011 1.19636 0.88256 0.79207 0.92154 1.86090 1.54719 1.20803 1.77536 1.21446 1.07809 1.36893 0.91434 0.91585 1.25080 0.94502 0.93973 0.99694 1.69723 1.10426 1.37486 1.35328 0.86410 0.77545 0.78886 0.84089 1.20454 1.21030 1.19728 1.23100 1.02255 1.00782 0.74430 1.20882 0.77874 0.90241 0.82855 1.90777 1.49306 1.63358 1.35461 0.91728 0.92021 0.92823 0.90909 0.89578 0.91811 0.90752 0.89184 0.90470 0.89584 0.90587 0.77120 0.93351 0.92731 0.90844 0.90462 0.76955 0.92039 0.89712 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 10.23 37.16 0.38 -1.18 16 2 C 0.10 1.03 5.94 -4.04 -0.02 1.01 16 3 N -0.61 -6.56 2.81 -174.96 -0.49 -7.05 16 4 C 0.11 0.74 6.32 -4.49 -0.03 0.71 16 5 C -0.13 -0.77 6.02 -26.59 -0.16 -0.93 16 6 C -0.13 -1.05 5.51 -26.51 -0.15 -1.19 16 7 C 0.16 2.17 2.70 -69.30 -0.19 1.99 16 8 H 0.12 1.80 7.57 -51.93 -0.39 1.41 16 9 N -0.74 -11.90 4.92 -60.03 -0.30 -12.20 16 10 C 0.72 15.87 7.92 -86.91 -0.69 15.19 16 11 O -0.58 -15.22 15.84 4.39 0.07 -15.15 16 12 N -0.63 -13.86 3.33 -176.25 -0.59 -14.44 16 13 C 0.11 1.93 6.15 -3.06 -0.02 1.91 16 14 C -0.12 -2.35 6.13 -24.90 -0.15 -2.50 16 15 C 0.25 6.16 0.87 -89.63 -0.08 6.08 16 16 O -0.58 -15.06 13.16 -35.23 -0.46 -15.52 16 17 C -0.54 -14.32 8.27 -34.44 -0.28 -14.60 16 18 H 0.07 1.72 7.79 -52.49 -0.41 1.31 16 19 C 0.07 1.90 5.29 -17.82 -0.09 1.80 16 20 N -0.89 -24.45 10.69 55.43 0.59 -23.86 16 21 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 C 0.12 2.96 5.38 -2.54 -0.01 2.95 16 26 C 0.50 7.48 7.19 -11.87 -0.09 7.39 16 27 O -0.52 -10.54 14.97 4.65 0.07 -10.47 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.51 8.02 -51.93 -0.42 0.10 16 32 H 0.09 1.08 7.13 -51.93 -0.37 0.71 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 35 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.49 8.13 -51.93 -0.42 0.07 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 39 H 0.39 5.27 7.57 -40.82 -0.31 4.96 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.08 1.50 8.03 -51.93 -0.42 1.08 16 44 H 0.38 10.13 7.56 45.56 0.34 10.47 16 45 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.08 2.42 7.33 -51.93 -0.38 2.04 16 47 H 0.06 1.50 8.03 -51.93 -0.42 1.09 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -35.25 375.43 -9.02 -44.27 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -6.97 Total: 14.31 kcal Atomic # 6 Polarization: 20.19 SS G_CDS: -1.58 Total: 18.61 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.78 Total: -57.55 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -0.32 Total: -41.15 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.25 -9.02 -44.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925982388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.642 kcal (2) G-P(sol) polarization free energy of solvation -35.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds