Wall clock time and date at job start Fri Apr 10 2020 18:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47047 * 2 1 4 4 C 1.45751 * 117.95026 * 270.02343 * 3 2 1 5 5 C 1.52917 * 110.49011 * 160.92555 * 4 3 2 6 6 C 1.53356 * 108.66207 * 50.76242 * 5 4 3 7 7 C 1.53070 * 108.41154 * 292.44556 * 6 5 4 8 8 H 1.08998 * 109.33064 * 288.81989 * 7 6 5 9 9 N 1.46509 * 109.39898 * 169.04092 * 7 6 5 10 10 C 1.34779 * 119.99795 * 154.57550 * 9 7 6 11 11 O 1.21578 * 120.00186 * 359.97438 * 10 9 7 12 12 N 1.34780 * 119.99572 * 179.97438 * 10 9 7 13 13 C 1.47024 * 125.64847 * 359.68614 * 12 10 9 14 14 C 1.54327 * 107.26774 * 179.20685 * 13 12 10 15 15 C 1.55155 * 102.94571 * 337.80617 * 14 13 12 16 16 O 1.42904 * 111.00600 * 277.43113 * 15 14 13 17 17 C 1.50698 * 111.03860 * 153.58728 * 15 14 13 18 18 H 1.07996 * 119.99981 * 6.33913 * 17 15 14 19 19 C 1.37874 * 120.00106 * 186.33083 * 17 15 14 20 20 N 1.31512 * 119.99898 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00200 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47032 * 89.99869 * 21 19 17 23 23 H 1.48495 * 109.47425 * 210.00359 * 21 19 17 24 24 H 1.48503 * 109.47121 * 330.00352 * 21 19 17 25 25 C 1.47426 * 125.64645 * 179.97438 * 12 10 9 26 26 C 1.33356 * 117.94334 * 90.00168 * 3 2 1 27 27 O 1.21276 * 118.24667 * 2.21911 * 26 3 2 28 28 H 1.08994 * 109.47000 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46837 * 299.99671 * 1 2 3 30 30 H 1.09004 * 109.47232 * 59.99733 * 1 2 3 31 31 H 1.09007 * 109.46774 * 240.00556 * 2 1 3 32 32 H 1.08992 * 109.47007 * 120.00643 * 2 1 3 33 33 H 1.08999 * 109.30412 * 281.24093 * 4 3 2 34 34 H 1.09007 * 109.30162 * 40.60774 * 4 3 2 35 35 H 1.09002 * 109.60530 * 170.51221 * 5 4 3 36 36 H 1.08999 * 109.60163 * 290.82929 * 5 4 3 37 37 H 1.09000 * 109.67205 * 172.72098 * 6 5 4 38 38 H 1.09001 * 109.69221 * 52.18075 * 6 5 4 39 39 H 0.97004 * 119.99661 * 334.56808 * 9 7 6 40 40 H 1.08995 * 109.88316 * 298.62177 * 13 12 10 41 41 H 1.09002 * 109.88101 * 59.79072 * 13 12 10 42 42 H 1.08999 * 110.71564 * 219.44370 * 14 13 12 43 43 H 1.08996 * 110.72159 * 96.17410 * 14 13 12 44 44 H 0.96692 * 114.00320 * 173.64830 * 16 15 14 45 45 H 0.96998 * 120.00066 * 179.97438 * 20 19 17 46 46 H 1.09002 * 110.36518 * 322.69812 * 25 12 10 47 47 H 1.08997 * 110.36787 * 85.02191 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2456 2.0255 -1.2875 5 6 2.2865 3.5455 -1.1256 6 6 3.2670 3.8928 0.0013 7 6 2.6792 3.3948 1.3240 8 1 1.8287 4.0188 1.5985 9 7 3.7004 3.4761 2.3715 10 6 3.3331 3.5952 3.6628 11 8 2.1545 3.6356 3.9584 12 7 4.2725 3.6695 4.6264 13 6 5.7262 3.6263 4.4110 14 6 6.3984 3.7641 5.7933 15 6 5.2976 4.4450 6.6488 16 8 5.2956 5.8600 6.4491 17 6 5.4615 4.1086 8.1086 18 1 6.3264 3.5538 8.4411 19 6 4.5074 4.5091 9.0197 20 7 3.4540 5.1844 8.6148 21 14 4.7108 4.0928 10.8293 22 1 5.4579 5.1826 11.5070 23 1 3.3731 3.9451 11.4567 24 1 5.4634 2.8195 10.9627 25 6 4.0124 3.8014 6.0715 26 6 2.2267 1.9704 1.1781 27 8 2.0410 1.3210 2.1854 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.1939 1.6815 -1.7002 34 1 1.4403 1.7575 -1.9716 35 1 2.6218 4.0035 -2.0562 36 1 1.2917 3.9135 -0.8748 37 1 3.4075 4.9728 0.0456 38 1 4.2244 3.4049 -0.1816 39 1 4.6407 3.4441 2.1356 40 1 6.0055 2.6760 3.9561 41 1 6.0302 4.4515 3.7670 42 1 7.2840 4.3965 5.7301 43 1 6.6511 2.7844 6.1987 44 1 4.5648 6.3179 6.8863 45 1 2.7825 5.4659 9.2557 46 1 3.1530 4.4493 6.2447 47 1 3.8457 2.8212 6.5180 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925982388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:28 Heat of formation + Delta-G solvation = -133.223850 kcal Electronic energy + Delta-G solvation = -29155.447129 eV Core-core repulsion = 25144.131038 eV Total energy + Delta-G solvation = -4011.316092 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.97541 -40.88707 -39.07433 -37.56975 -36.57107 -36.03137 -34.23386 -34.06716 -31.84145 -30.97866 -29.92496 -29.33809 -26.96678 -25.55752 -24.67637 -23.78900 -22.78926 -21.48524 -21.05752 -19.92453 -19.17635 -18.76139 -18.01249 -17.66658 -17.47345 -17.01384 -16.62378 -16.24249 -16.15676 -15.48809 -15.28505 -15.00537 -14.94294 -14.71278 -14.66915 -14.59289 -14.27102 -13.77481 -13.52648 -13.42853 -13.31713 -13.10520 -12.86057 -12.83024 -12.53069 -12.49279 -12.33824 -12.23898 -12.23733 -12.10013 -11.97016 -11.80958 -11.33467 -11.20092 -11.15271 -10.66734 -10.31961 -10.09916 -9.69952 -9.35061 -8.24662 -6.42189 1.31371 1.41924 1.42963 1.53122 1.80312 1.96828 2.30350 2.38079 3.01079 3.06310 3.53372 3.63781 3.78646 3.82466 4.00089 4.07368 4.13627 4.17304 4.22351 4.31581 4.35425 4.45976 4.56253 4.59886 4.64526 4.74868 4.79317 4.83545 4.99452 5.05639 5.06136 5.06960 5.08826 5.21383 5.25922 5.30636 5.36571 5.40883 5.45971 5.55822 5.75396 6.03104 6.13871 6.45050 6.65132 7.04527 7.18572 7.27127 7.34515 7.59394 8.80606 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.022456 B = 0.002993 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.573386 B = 9352.807383 C = 9909.239210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.599 5.599 4 C 0.103 3.897 5 C -0.127 4.127 6 C -0.118 4.118 7 C 0.153 3.847 8 H 0.089 0.911 9 N -0.715 5.715 10 C 0.716 3.284 11 O -0.636 6.636 12 N -0.635 5.635 13 C 0.107 3.893 14 C -0.109 4.109 15 C 0.235 3.765 16 O -0.584 6.584 17 C -0.556 4.556 18 H 0.070 0.930 19 C 0.023 3.977 20 N -0.916 5.916 21 Si 0.966 3.034 22 H -0.271 1.271 23 H -0.287 1.287 24 H -0.265 1.265 25 C 0.131 3.869 26 C 0.489 3.511 27 O -0.586 6.586 28 H 0.079 0.921 29 H 0.019 0.981 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.130 0.870 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.412 0.588 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.372 0.628 45 H 0.268 0.732 46 H 0.042 0.958 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.859 -5.422 -26.678 27.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.332 5.332 4 C -0.018 4.018 5 C -0.165 4.165 6 C -0.156 4.156 7 C 0.044 3.956 8 H 0.107 0.893 9 N -0.372 5.372 10 C 0.418 3.582 11 O -0.517 6.517 12 N -0.372 5.372 13 C -0.015 4.015 14 C -0.147 4.147 15 C 0.194 3.806 16 O -0.391 6.391 17 C -0.595 4.595 18 H 0.088 0.912 19 C -0.177 4.177 20 N -0.555 5.555 21 Si 0.791 3.209 22 H -0.197 1.197 23 H -0.213 1.213 24 H -0.190 1.190 25 C 0.007 3.993 26 C 0.275 3.725 27 O -0.465 6.465 28 H 0.098 0.902 29 H 0.039 0.961 30 H 0.095 0.905 31 H 0.133 0.867 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.148 0.852 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.249 0.751 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.221 0.779 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.261 -5.776 -26.316 26.972 hybrid contribution -0.783 -0.109 2.033 2.181 sum 0.478 -5.886 -24.283 24.991 Atomic orbital electron populations 1.22045 0.95574 1.02894 1.01297 1.21566 0.94812 0.82563 1.03398 1.47616 1.64666 1.14711 1.06203 1.21832 1.03924 0.93222 0.82823 1.21906 0.99847 0.94614 1.00122 1.22009 1.00453 1.03625 0.89546 1.20802 0.93082 0.92001 0.89745 0.89309 1.44638 1.09963 1.79489 1.03096 1.15688 0.83812 0.77439 0.81297 1.90840 1.18238 1.60285 1.82356 1.47843 1.06800 1.75807 1.06715 1.22125 0.78692 1.01900 0.98773 1.22581 0.98043 1.00963 0.93103 1.19830 0.89554 0.78736 0.92475 1.86077 1.54227 1.21455 1.77389 1.21801 1.07963 1.37000 0.92703 0.91204 1.25875 0.94199 0.93893 1.03773 1.69857 1.10990 1.38262 1.36388 0.85436 0.77290 0.78969 0.79228 1.19667 1.21328 1.18957 1.22621 1.01337 0.98285 0.77027 1.21125 0.77520 0.90487 0.83336 1.90751 1.52681 1.64973 1.38080 0.90193 0.96140 0.90494 0.86661 0.93024 0.89108 0.88132 0.85211 0.91369 0.88365 0.88544 0.75093 0.89991 0.90094 0.89089 0.89648 0.77918 0.92238 0.93966 0.95282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 10.23 71.98 0.74 -2.16 16 2 C 0.10 1.86 5.94 86.38 0.51 2.37 16 3 N -0.60 -11.86 2.81 -826.64 -2.32 -14.18 16 4 C 0.10 0.87 6.32 86.49 0.55 1.41 16 5 C -0.13 -0.95 6.02 30.69 0.18 -0.77 16 6 C -0.12 -1.53 5.51 30.74 0.17 -1.36 16 7 C 0.15 4.15 2.70 44.10 0.12 4.27 16 8 H 0.09 2.91 7.57 -2.39 -0.02 2.89 16 9 N -0.71 -22.97 4.92 -462.09 -2.27 -25.25 16 10 C 0.72 32.62 7.92 179.05 1.42 34.04 16 11 O -0.64 -35.68 15.84 -3.09 -0.05 -35.73 16 12 N -0.64 -28.65 3.33 -829.78 -2.76 -31.41 16 13 C 0.11 3.70 6.15 86.73 0.53 4.23 16 14 C -0.11 -4.28 6.13 31.78 0.19 -4.09 16 15 C 0.23 11.85 0.87 -10.15 -0.01 11.84 16 16 O -0.58 -30.73 13.16 -148.98 -1.96 -32.69 16 17 C -0.56 -30.09 8.27 25.60 0.21 -29.88 16 18 H 0.07 3.63 7.79 -2.91 -0.02 3.61 16 19 C 0.02 1.28 5.29 84.65 0.45 1.73 16 20 N -0.92 -52.39 10.69 21.45 0.23 -52.16 16 21 Si 0.97 43.45 29.54 68.60 2.03 45.48 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 C 0.13 7.03 5.38 86.85 0.47 7.50 16 26 C 0.49 14.97 7.19 87.71 0.63 15.60 16 27 O -0.59 -25.54 14.97 -2.15 -0.03 -25.57 16 28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.12 1.20 8.02 -2.38 -0.02 1.18 16 32 H 0.05 1.35 7.13 -2.39 -0.02 1.33 16 33 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.10 0.43 8.10 -2.38 -0.02 0.41 16 35 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.07 0.68 8.13 -2.39 -0.02 0.66 16 37 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.10 0.91 8.10 -2.39 -0.02 0.89 16 39 H 0.41 10.13 7.57 -92.71 -0.70 9.43 16 40 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 43 H 0.08 3.19 8.03 -2.39 -0.02 3.17 16 44 H 0.37 20.67 7.56 -74.06 -0.56 20.11 16 45 H 0.27 14.75 8.31 -92.71 -0.77 13.97 16 46 H 0.04 2.59 7.33 -2.39 -0.02 2.57 16 47 H 0.03 1.66 8.03 -2.39 -0.02 1.64 16 Total: -1.00 -85.76 375.43 -1.26 -87.01 By element: Atomic # 1 Polarization: 40.05 SS G_CDS: -0.28 Total: 39.77 kcal Atomic # 6 Polarization: 38.56 SS G_CDS: 6.16 Total: 44.73 kcal Atomic # 7 Polarization: -115.87 SS G_CDS: -7.13 Total: -123.00 kcal Atomic # 8 Polarization: -91.96 SS G_CDS: -2.04 Total: -94.00 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -85.76 -1.26 -87.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925982388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.209 kcal (2) G-P(sol) polarization free energy of solvation -85.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds