Wall clock time and date at job start Fri Apr 10 2020 18:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47348 * 2 1 4 4 C 1.34773 * 120.00000 * 83.84527 * 3 2 1 5 5 O 1.21277 * 119.99904 * 185.30077 * 4 3 2 6 6 C 1.50703 * 120.00101 * 5.29877 * 4 3 2 7 7 H 1.09003 * 109.68016 * 357.92658 * 6 4 3 8 8 C 1.53295 * 109.67895 * 118.44179 * 6 4 3 9 9 O 1.42965 * 109.22359 * 172.02520 * 8 6 4 10 10 C 1.42967 * 114.16773 * 297.42417 * 9 8 6 11 11 C 1.53299 * 109.22094 * 62.57484 * 10 9 8 12 12 N 1.47148 * 109.68023 * 237.36872 * 6 4 3 13 13 C 1.34773 * 120.98783 * 9.72207 * 12 6 4 14 14 C 1.50701 * 120.00425 * 185.09258 * 13 12 6 15 15 O 1.21287 * 119.99654 * 5.09284 * 13 12 6 16 16 C 1.46499 * 119.99938 * 263.84742 * 3 2 1 17 17 C 1.53954 * 113.83440 * 319.48792 * 16 3 2 18 18 N 1.47584 * 86.11254 * 90.75569 * 17 16 3 19 19 C 1.36936 * 134.48631 * 204.63763 * 18 17 16 20 20 H 1.08000 * 119.99754 * 179.97438 * 19 18 17 21 21 C 1.38810 * 120.00412 * 359.97438 * 19 18 17 22 22 N 1.31617 * 119.99951 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00228 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46805 * 60.00225 * 23 21 19 25 25 H 1.48503 * 109.47133 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46986 * 300.00177 * 23 21 19 27 27 C 1.47574 * 91.01872 * 24.63612 * 18 17 16 28 28 H 1.08994 * 109.47859 * 186.50671 * 1 2 3 29 29 H 1.08997 * 109.46969 * 306.51232 * 1 2 3 30 30 H 1.09008 * 109.46563 * 66.50454 * 1 2 3 31 31 H 1.09000 * 109.46967 * 239.99309 * 2 1 3 32 32 H 1.09007 * 109.46523 * 120.00196 * 2 1 3 33 33 H 1.08999 * 109.51434 * 291.94650 * 8 6 4 34 34 H 1.08999 * 109.51325 * 52.10638 * 8 6 4 35 35 H 1.08999 * 109.51490 * 182.50469 * 10 9 8 36 36 H 1.09004 * 109.50902 * 302.65255 * 10 9 8 37 37 H 1.09001 * 109.68028 * 67.42771 * 11 10 9 38 38 H 1.09000 * 109.67828 * 187.94049 * 11 10 9 39 39 H 1.08999 * 109.46725 * 89.99796 * 14 13 12 40 40 H 1.08994 * 109.47049 * 210.00096 * 14 13 12 41 41 H 1.09002 * 109.46957 * 330.00353 * 14 13 12 42 42 H 1.08992 * 112.94406 * 187.80851 * 16 3 2 43 43 H 1.08999 * 113.76265 * 205.05182 * 17 16 3 44 44 H 1.08999 * 113.77335 * 336.45305 * 17 16 3 45 45 H 0.97002 * 120.00545 * 180.02562 * 22 21 19 46 46 H 1.08995 * 113.77230 * 221.05499 * 27 18 17 47 47 H 1.09002 * 113.87016 * 89.67592 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1251 2.0582 1.1604 5 8 2.4369 3.2302 1.1523 6 6 1.8568 1.3590 2.4682 7 1 1.5565 0.3284 2.2786 8 6 3.1228 1.3771 3.3325 9 8 2.8099 0.8808 4.6362 10 6 1.8573 1.6720 5.3506 11 6 0.5266 1.6689 4.5896 12 7 0.7881 2.0616 3.1957 13 6 0.0701 3.0362 2.6032 14 6 -0.9401 3.8194 3.4014 15 8 0.2371 3.2830 1.4275 16 6 2.3908 2.0264 -1.2614 17 6 3.1514 1.1039 -2.2313 18 7 1.8261 0.7514 -2.7765 19 6 1.3210 -0.3310 -3.4462 20 1 0.2833 -0.3450 -3.7450 21 6 2.1427 -1.4102 -3.7410 22 7 3.4073 -1.3934 -3.3765 23 14 1.4534 -2.8870 -4.6540 24 1 0.9401 -2.4546 -5.9786 25 1 2.5260 -3.8965 -4.8437 26 1 0.3462 -3.4842 -3.8648 27 6 1.2639 2.0337 -2.3102 28 1 -0.3634 -1.0209 0.1164 29 1 -0.3633 0.6114 0.8260 30 1 -0.3633 0.4098 -0.9426 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8846 0.7454 2.8756 34 1 3.4951 2.3985 3.4115 35 1 1.7087 1.2526 6.3456 36 1 2.2250 2.6945 5.4370 37 1 0.0919 0.6696 4.6142 38 1 -0.1606 2.3795 5.0490 39 1 -0.4579 4.6928 3.8406 40 1 -1.7494 4.1420 2.7465 41 1 -1.3435 3.1899 4.1945 42 1 2.8635 2.9981 -1.1183 43 1 3.7887 1.6377 -2.9363 44 1 3.6597 0.2738 -1.7406 45 1 3.9817 -2.1474 -3.5828 46 1 0.2652 1.9460 -1.8826 47 1 1.3457 2.8416 -3.0373 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957408754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:42 Heat of formation + Delta-G solvation = -17.929828 kcal Electronic energy + Delta-G solvation = -30653.258186 eV Core-core repulsion = 26646.941618 eV Total energy + Delta-G solvation = -4006.316568 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.04332 -39.17151 -38.33461 -37.23731 -34.91980 -34.36646 -32.32086 -31.77010 -29.98857 -29.79048 -27.84515 -27.26131 -25.01110 -24.81704 -23.22765 -22.65275 -22.24989 -20.69469 -18.93816 -18.03789 -17.42451 -17.04827 -16.71962 -16.62603 -15.88167 -15.59179 -15.43898 -15.07845 -14.80445 -14.47368 -14.26148 -13.80774 -13.67466 -13.59465 -13.43106 -12.95229 -12.65734 -12.58179 -12.42670 -12.29939 -12.16539 -11.85629 -11.60162 -11.42529 -11.29647 -11.21060 -10.97376 -10.82842 -10.52817 -10.46796 -10.31220 -9.99148 -9.68014 -9.54481 -9.42197 -9.18008 -8.75832 -8.66877 -7.81112 -6.83814 -5.75365 -3.06952 2.47516 2.65861 3.33296 3.37713 3.39361 3.44729 3.45028 3.70541 4.39346 4.46513 4.47938 4.65799 4.79046 4.84682 4.89276 4.97231 5.05780 5.17213 5.24729 5.26839 5.37441 5.49300 5.50662 5.56558 5.65113 5.68595 5.72618 6.00636 6.04111 6.17992 6.26785 6.31887 6.38880 6.55455 6.66609 6.78651 6.84572 6.94391 7.14621 7.22641 7.24183 7.44212 7.61080 7.98161 8.14724 8.18471 8.81446 9.06637 9.71925 10.63210 11.40914 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018887 B = 0.004000 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.109070 B = 6997.796511 C = 7286.795059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.098 3.902 3 N -0.567 5.567 4 C 0.538 3.462 5 O -0.538 6.538 6 C 0.086 3.914 7 H 0.103 0.897 8 C 0.063 3.937 9 O -0.373 6.373 10 C 0.044 3.956 11 C 0.074 3.926 12 N -0.611 5.611 13 C 0.502 3.498 14 C -0.169 4.169 15 O -0.492 6.492 16 C 0.098 3.902 17 C 0.151 3.849 18 N -0.606 5.606 19 C -0.216 4.216 20 H 0.077 0.923 21 C -0.007 4.007 22 N -0.922 5.922 23 Si 0.907 3.093 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.107 3.893 28 H 0.054 0.946 29 H 0.036 0.964 30 H 0.067 0.933 31 H 0.129 0.871 32 H 0.053 0.947 33 H 0.112 0.888 34 H 0.068 0.932 35 H 0.107 0.893 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.036 0.964 44 H 0.078 0.922 45 H 0.254 0.746 46 H 0.049 0.951 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.502 5.536 20.073 21.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.024 4.024 3 N -0.299 5.299 4 C 0.325 3.675 5 O -0.416 6.416 6 C -0.020 4.020 7 H 0.120 0.880 8 C -0.015 4.015 9 O -0.291 6.291 10 C -0.034 4.034 11 C -0.049 4.049 12 N -0.350 5.350 13 C 0.291 3.709 14 C -0.229 4.229 15 O -0.365 6.365 16 C -0.007 4.007 17 C 0.025 3.975 18 N -0.333 5.333 19 C -0.344 4.344 20 H 0.094 0.906 21 C -0.203 4.203 22 N -0.569 5.569 23 Si 0.737 3.263 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.020 4.020 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.147 0.853 32 H 0.071 0.929 33 H 0.130 0.870 34 H 0.087 0.913 35 H 0.125 0.875 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.054 0.946 44 H 0.096 0.904 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.166 5.823 19.321 20.830 hybrid contribution -0.638 -0.716 -0.738 1.210 sum -5.804 5.107 18.582 20.126 Atomic orbital electron populations 1.22096 0.96539 1.00592 1.01998 1.21777 0.94187 0.82253 1.04221 1.47274 1.63468 1.13992 1.05123 1.19404 0.77321 0.86429 0.84324 1.90628 1.49135 1.15092 1.86728 1.22047 0.89732 0.97930 0.92326 0.87963 1.22857 0.94737 1.01349 0.82590 1.87996 1.61221 1.51877 1.28030 1.23016 0.88216 0.96496 0.95627 1.22523 0.98634 1.02239 0.81550 1.48046 1.35568 1.38030 1.13330 1.20849 0.81963 0.79716 0.88406 1.21925 0.98938 1.00714 1.01298 1.90871 1.64925 1.64969 1.15705 1.22777 0.98039 0.96615 0.83229 1.22680 0.89358 0.94681 0.90812 1.46119 1.06646 1.13291 1.67290 1.18932 0.94281 0.92162 1.29018 0.90551 1.24713 0.95665 0.98411 1.01525 1.69798 1.04465 1.31370 1.51271 0.86285 0.77623 0.82547 0.79828 1.21375 1.21650 1.21176 1.23010 0.96838 0.89174 0.92977 0.92695 0.94467 0.91400 0.85284 0.92907 0.87028 0.91344 0.87482 0.92384 0.90234 0.88225 0.88943 0.88883 0.90208 0.89198 0.94647 0.90416 0.93626 0.93269 0.94384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.91 37.16 0.37 -2.38 16 2 C 0.10 1.85 5.01 -4.04 -0.02 1.83 16 3 N -0.57 -11.13 2.71 -167.90 -0.45 -11.58 16 4 C 0.54 10.05 4.27 -10.99 -0.05 10.00 16 5 O -0.54 -11.64 14.08 -19.09 -0.27 -11.91 16 6 C 0.09 1.25 2.97 -68.58 -0.20 1.05 16 7 H 0.10 1.45 5.38 -51.93 -0.28 1.17 16 8 C 0.06 0.79 6.26 37.31 0.23 1.03 16 9 O -0.37 -4.19 10.74 -35.23 -0.38 -4.57 16 10 C 0.04 0.34 6.99 37.31 0.26 0.60 16 11 C 0.07 0.57 6.46 -3.53 -0.02 0.54 16 12 N -0.61 -7.60 3.02 -166.05 -0.50 -8.10 16 13 C 0.50 7.12 7.46 -10.99 -0.08 7.04 16 14 C -0.17 -1.48 9.59 36.01 0.35 -1.14 16 15 O -0.49 -9.57 12.98 -19.10 -0.25 -9.82 16 16 C 0.10 2.09 4.52 -70.14 -0.32 1.78 16 17 C 0.15 3.56 6.55 -2.97 -0.02 3.54 16 18 N -0.61 -15.08 2.40 -178.09 -0.43 -15.51 16 19 C -0.22 -5.81 10.07 -15.06 -0.15 -5.96 16 20 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 22 N -0.92 -26.15 11.38 55.49 0.63 -25.52 16 23 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.11 2.37 8.16 -2.98 -0.02 2.35 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.04 0.64 7.97 -51.93 -0.41 0.22 16 30 H 0.07 1.37 6.21 -51.92 -0.32 1.05 16 31 H 0.13 2.95 5.12 -51.93 -0.27 2.68 16 32 H 0.05 0.86 6.10 -51.93 -0.32 0.54 16 33 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.07 0.93 7.96 -51.93 -0.41 0.51 16 35 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.48 5.52 -51.93 -0.29 0.19 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.45 6.05 -51.93 -0.31 0.13 16 42 H 0.09 1.94 7.24 -51.93 -0.38 1.56 16 43 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.08 1.97 6.60 -51.93 -0.34 1.63 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.05 1.11 6.37 -51.93 -0.33 0.77 16 47 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 361.82 15.07 5.45 5.45 Total: -1.00 -34.32 361.82 -8.01 -42.32 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -7.01 Total: 2.62 kcal Atomic # 6 Polarization: 19.77 SS G_CDS: 0.22 Total: 19.99 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: -0.75 Total: -60.71 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.89 Total: -26.29 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.32 -8.01 -42.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957408754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.394 kcal (2) G-P(sol) polarization free energy of solvation -34.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds