Wall clock time and date at job start Fri Apr 10 2020 18:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47348 * 2 1 4 4 C 1.34773 * 120.00000 * 83.84527 * 3 2 1 5 5 O 1.21277 * 119.99904 * 185.30077 * 4 3 2 6 6 C 1.50703 * 120.00101 * 5.29877 * 4 3 2 7 7 H 1.09003 * 109.68016 * 357.92658 * 6 4 3 8 8 C 1.53295 * 109.67895 * 118.44179 * 6 4 3 9 9 O 1.42965 * 109.22359 * 172.02520 * 8 6 4 10 10 C 1.42967 * 114.16773 * 297.42417 * 9 8 6 11 11 C 1.53299 * 109.22094 * 62.57484 * 10 9 8 12 12 N 1.47148 * 109.68023 * 237.36872 * 6 4 3 13 13 C 1.34773 * 120.98783 * 9.72207 * 12 6 4 14 14 C 1.50701 * 120.00425 * 185.09258 * 13 12 6 15 15 O 1.21287 * 119.99654 * 5.09284 * 13 12 6 16 16 C 1.46499 * 119.99938 * 263.84742 * 3 2 1 17 17 C 1.53954 * 113.83440 * 319.48792 * 16 3 2 18 18 N 1.47584 * 86.11254 * 90.75569 * 17 16 3 19 19 C 1.36936 * 134.48631 * 204.63763 * 18 17 16 20 20 H 1.08000 * 119.99754 * 179.97438 * 19 18 17 21 21 C 1.38810 * 120.00412 * 359.97438 * 19 18 17 22 22 N 1.31617 * 119.99951 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00228 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46805 * 60.00225 * 23 21 19 25 25 H 1.48503 * 109.47133 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46986 * 300.00177 * 23 21 19 27 27 C 1.47574 * 91.01872 * 24.63612 * 18 17 16 28 28 H 1.08994 * 109.47859 * 186.50671 * 1 2 3 29 29 H 1.08997 * 109.46969 * 306.51232 * 1 2 3 30 30 H 1.09008 * 109.46563 * 66.50454 * 1 2 3 31 31 H 1.09000 * 109.46967 * 239.99309 * 2 1 3 32 32 H 1.09007 * 109.46523 * 120.00196 * 2 1 3 33 33 H 1.08999 * 109.51434 * 291.94650 * 8 6 4 34 34 H 1.08999 * 109.51325 * 52.10638 * 8 6 4 35 35 H 1.08999 * 109.51490 * 182.50469 * 10 9 8 36 36 H 1.09004 * 109.50902 * 302.65255 * 10 9 8 37 37 H 1.09001 * 109.68028 * 67.42771 * 11 10 9 38 38 H 1.09000 * 109.67828 * 187.94049 * 11 10 9 39 39 H 1.08999 * 109.46725 * 89.99796 * 14 13 12 40 40 H 1.08994 * 109.47049 * 210.00096 * 14 13 12 41 41 H 1.09002 * 109.46957 * 330.00353 * 14 13 12 42 42 H 1.08992 * 112.94406 * 187.80851 * 16 3 2 43 43 H 1.08999 * 113.76265 * 205.05182 * 17 16 3 44 44 H 1.08999 * 113.77335 * 336.45305 * 17 16 3 45 45 H 0.97002 * 120.00545 * 180.02562 * 22 21 19 46 46 H 1.08995 * 113.77230 * 221.05499 * 27 18 17 47 47 H 1.09002 * 113.87016 * 89.67592 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1251 2.0582 1.1604 5 8 2.4369 3.2302 1.1523 6 6 1.8568 1.3590 2.4682 7 1 1.5565 0.3284 2.2786 8 6 3.1228 1.3771 3.3325 9 8 2.8099 0.8808 4.6362 10 6 1.8573 1.6720 5.3506 11 6 0.5266 1.6689 4.5896 12 7 0.7881 2.0616 3.1957 13 6 0.0701 3.0362 2.6032 14 6 -0.9401 3.8194 3.4014 15 8 0.2371 3.2830 1.4275 16 6 2.3908 2.0264 -1.2614 17 6 3.1514 1.1039 -2.2313 18 7 1.8261 0.7514 -2.7765 19 6 1.3210 -0.3310 -3.4462 20 1 0.2833 -0.3450 -3.7450 21 6 2.1427 -1.4102 -3.7410 22 7 3.4073 -1.3934 -3.3765 23 14 1.4534 -2.8870 -4.6540 24 1 0.9401 -2.4546 -5.9786 25 1 2.5260 -3.8965 -4.8437 26 1 0.3462 -3.4842 -3.8648 27 6 1.2639 2.0337 -2.3102 28 1 -0.3634 -1.0209 0.1164 29 1 -0.3633 0.6114 0.8260 30 1 -0.3633 0.4098 -0.9426 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8846 0.7454 2.8756 34 1 3.4951 2.3985 3.4115 35 1 1.7087 1.2526 6.3456 36 1 2.2250 2.6945 5.4370 37 1 0.0919 0.6696 4.6142 38 1 -0.1606 2.3795 5.0490 39 1 -0.4579 4.6928 3.8406 40 1 -1.7494 4.1420 2.7465 41 1 -1.3435 3.1899 4.1945 42 1 2.8635 2.9981 -1.1183 43 1 3.7887 1.6377 -2.9363 44 1 3.6597 0.2738 -1.7406 45 1 3.9817 -2.1474 -3.5828 46 1 0.2652 1.9460 -1.8826 47 1 1.3457 2.8416 -3.0373 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957408754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:41 Heat of formation + Delta-G solvation = -40.797132 kcal Electronic energy + Delta-G solvation = -30654.249787 eV Core-core repulsion = 26646.941618 eV Total energy + Delta-G solvation = -4007.308169 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.22079 -40.67277 -39.30266 -38.84156 -36.10762 -35.79074 -34.18664 -32.91699 -31.40471 -30.74662 -29.36391 -28.52787 -26.71184 -26.14661 -24.93477 -24.01205 -23.28121 -22.12846 -20.25168 -19.45860 -18.92806 -18.50440 -18.09175 -17.74030 -17.05890 -16.72566 -16.71184 -16.45483 -15.99667 -15.83679 -15.60726 -15.48629 -14.93936 -14.78616 -14.62975 -14.50428 -14.18807 -14.13562 -13.64815 -13.34004 -13.19079 -13.10720 -13.08285 -12.85620 -12.77536 -12.65641 -12.43761 -12.31886 -12.03113 -11.98193 -11.81310 -11.57599 -11.37181 -11.32768 -10.94787 -10.70008 -10.45798 -9.70673 -9.40089 -8.87620 -7.84552 -5.17804 1.39018 1.48750 1.50575 1.56647 1.63540 1.99637 2.13555 2.49796 2.77717 3.28431 3.39793 3.44775 3.56507 3.76494 3.83914 3.89559 4.02181 4.08807 4.18337 4.24552 4.39243 4.40920 4.46894 4.48639 4.50892 4.57051 4.63766 4.65553 4.74553 4.78146 4.86603 4.89128 4.91992 5.05409 5.07401 5.24452 5.25036 5.37171 5.40680 5.48793 5.81677 5.93173 5.98938 6.31069 6.64192 6.96012 7.12455 7.36211 7.63992 8.59628 9.31133 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018887 B = 0.004000 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.109070 B = 6997.796511 C = 7286.795059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.105 3.895 3 N -0.574 5.574 4 C 0.538 3.462 5 O -0.571 6.571 6 C 0.090 3.910 7 H 0.107 0.893 8 C 0.072 3.928 9 O -0.381 6.381 10 C 0.036 3.964 11 C 0.069 3.931 12 N -0.610 5.610 13 C 0.489 3.511 14 C -0.159 4.159 15 O -0.556 6.556 16 C 0.116 3.884 17 C 0.157 3.843 18 N -0.617 5.617 19 C -0.224 4.224 20 H 0.076 0.924 21 C -0.053 4.053 22 N -0.947 5.947 23 Si 0.969 3.031 24 H -0.286 1.286 25 H -0.295 1.295 26 H -0.274 1.274 27 C 0.111 3.889 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.055 0.945 35 H 0.143 0.857 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.136 0.864 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.119 0.881 42 H 0.086 0.914 43 H 0.026 0.974 44 H 0.058 0.942 45 H 0.249 0.751 46 H 0.046 0.954 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.176 4.944 22.965 24.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.017 4.017 3 N -0.305 5.305 4 C 0.328 3.672 5 O -0.451 6.451 6 C -0.017 4.017 7 H 0.125 0.875 8 C -0.006 4.006 9 O -0.298 6.298 10 C -0.040 4.040 11 C -0.052 4.052 12 N -0.348 5.348 13 C 0.279 3.721 14 C -0.218 4.218 15 O -0.434 6.434 16 C 0.010 3.990 17 C 0.031 3.969 18 N -0.344 5.344 19 C -0.352 4.352 20 H 0.094 0.906 21 C -0.247 4.247 22 N -0.596 5.596 23 Si 0.798 3.202 24 H -0.213 1.213 25 H -0.221 1.221 26 H -0.200 1.200 27 C -0.015 4.015 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.132 0.868 34 H 0.074 0.926 35 H 0.161 0.839 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.154 0.846 39 H 0.126 0.874 40 H 0.107 0.893 41 H 0.137 0.863 42 H 0.104 0.896 43 H 0.044 0.956 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.869 5.223 22.285 23.897 hybrid contribution -0.142 -0.477 -1.541 1.620 sum -7.012 4.746 20.743 22.405 Atomic orbital electron populations 1.21941 0.95623 1.01550 1.00640 1.21667 0.94773 0.81648 1.03647 1.47339 1.63888 1.14349 1.04933 1.20050 0.75903 0.86098 0.85189 1.90596 1.50456 1.16686 1.87316 1.21931 0.91647 0.97529 0.90612 0.87539 1.22673 0.93783 1.00758 0.83394 1.87997 1.62310 1.52565 1.26975 1.23357 0.87339 0.96617 0.96712 1.22916 0.99452 1.04063 0.78737 1.48281 1.34293 1.37236 1.14983 1.21895 0.82312 0.79726 0.88144 1.21945 0.97306 1.01067 1.01464 1.90837 1.67069 1.66802 1.18656 1.22437 0.96822 0.95882 0.83872 1.22528 0.88965 0.94304 0.91127 1.46222 1.07274 1.13834 1.67096 1.19168 0.94420 0.92942 1.28635 0.90595 1.25392 0.95964 1.00763 1.02531 1.69969 1.05478 1.31794 1.52368 0.85300 0.76977 0.79332 0.78582 1.21263 1.22125 1.20033 1.23036 0.96894 0.88302 0.93276 0.90867 0.93755 0.94243 0.89141 0.90109 0.86831 0.92637 0.83899 0.92334 0.88830 0.84598 0.87441 0.89277 0.86303 0.89562 0.95618 0.92380 0.94232 0.93573 0.93652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 9.91 71.98 0.71 -4.20 16 2 C 0.11 3.98 5.01 86.38 0.43 4.41 16 3 N -0.57 -23.00 2.71 -803.51 -2.18 -25.18 16 4 C 0.54 20.30 4.27 87.66 0.37 20.67 16 5 O -0.57 -25.28 14.08 20.55 0.29 -25.00 16 6 C 0.09 2.50 2.97 44.22 0.13 2.64 16 7 H 0.11 2.84 5.38 -2.39 -0.01 2.82 16 8 C 0.07 1.75 6.26 72.08 0.45 2.20 16 9 O -0.38 -7.51 10.74 -148.98 -1.60 -9.11 16 10 C 0.04 0.42 6.99 72.08 0.50 0.92 16 11 C 0.07 0.76 6.46 86.35 0.56 1.32 16 12 N -0.61 -13.75 3.02 -797.65 -2.41 -16.16 16 13 C 0.49 13.07 7.46 87.66 0.65 13.73 16 14 C -0.16 -2.27 9.59 71.24 0.68 -1.59 16 15 O -0.56 -21.76 12.98 20.52 0.27 -21.50 16 16 C 0.12 5.11 4.52 46.75 0.21 5.32 16 17 C 0.16 7.73 6.55 86.48 0.57 8.30 16 18 N -0.62 -31.61 2.40 -717.35 -1.72 -33.33 16 19 C -0.22 -12.21 10.07 84.03 0.85 -11.37 16 20 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 21 C -0.05 -2.91 5.50 84.86 0.47 -2.44 16 22 N -0.95 -54.96 11.38 21.65 0.25 -54.72 16 23 Si 0.97 44.75 29.55 68.60 2.03 46.78 16 24 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 25 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 27 C 0.11 5.09 8.16 86.48 0.71 5.79 16 28 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.04 1.48 7.97 -2.39 -0.02 1.46 16 30 H 0.04 1.60 6.21 -2.38 -0.01 1.59 16 31 H 0.09 4.24 5.12 -2.39 -0.01 4.23 16 32 H 0.08 2.57 6.10 -2.38 -0.01 2.55 16 33 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.06 1.48 7.96 -2.39 -0.02 1.46 16 35 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.14 0.51 5.52 -2.39 -0.01 0.50 16 39 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.12 0.71 6.05 -2.39 -0.01 0.69 16 42 H 0.09 3.88 7.24 -2.39 -0.02 3.86 16 43 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.06 3.09 6.60 -2.39 -0.02 3.07 16 45 H 0.25 14.16 8.31 -92.71 -0.77 13.38 16 46 H 0.05 2.14 6.37 -2.39 -0.02 2.12 16 47 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -77.81 361.82 3.21 -74.61 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.98 Total: 17.91 kcal Atomic # 6 Polarization: 38.40 SS G_CDS: 7.30 Total: 45.70 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -6.06 Total: -129.38 kcal Atomic # 8 Polarization: -54.56 SS G_CDS: -1.04 Total: -55.61 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -77.81 3.21 -74.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957408754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.810 kcal (2) G-P(sol) polarization free energy of solvation -77.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds