Wall clock time and date at job start Fri Apr 10 2020 18:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21284 * 119.99973 * 2 1 4 4 N 1.34776 * 120.00186 * 180.02562 * 2 1 3 5 5 C 1.47146 * 120.98584 * 7.19744 * 4 2 1 6 6 C 1.53289 * 108.39004 * 230.56277 * 5 4 2 7 7 O 1.42957 * 109.22631 * 307.70131 * 6 5 4 8 8 C 1.42962 * 114.16822 * 62.57149 * 7 6 5 9 9 C 1.47156 * 120.97959 * 187.22816 * 4 2 1 10 10 H 1.09000 * 109.67824 * 249.16051 * 9 4 2 11 11 C 1.50703 * 109.68470 * 9.71596 * 9 4 2 12 12 O 1.21281 * 119.99878 * 69.48387 * 11 9 4 13 13 N 1.34771 * 119.99867 * 249.48438 * 11 9 4 14 14 C 1.47432 * 125.64790 * 359.69190 * 13 11 9 15 15 C 1.55131 * 104.71948 * 155.81810 * 14 13 11 16 16 C 1.55149 * 101.49067 * 37.29111 * 15 14 13 17 17 H 1.09002 * 110.87121 * 82.76445 * 16 15 14 18 18 N 1.46495 * 110.72657 * 205.96852 * 16 15 14 19 19 C 1.46504 * 119.99687 * 53.52245 * 18 16 15 20 20 C 1.36935 * 120.00309 * 233.52782 * 18 16 15 21 21 H 1.08002 * 120.00126 * 21.82842 * 20 18 16 22 22 C 1.38816 * 119.99776 * 201.83081 * 20 18 16 23 23 N 1.31613 * 120.00355 * 20.55562 * 22 20 18 24 24 Si 1.86801 * 119.99825 * 200.55580 * 22 20 18 25 25 H 1.48499 * 109.47113 * 94.98628 * 24 22 20 26 26 H 1.48499 * 109.47076 * 214.98801 * 24 22 20 27 27 H 1.48504 * 109.46943 * 334.98593 * 24 22 20 28 28 C 1.47027 * 125.64960 * 179.97438 * 13 11 9 29 29 H 1.09007 * 109.47126 * 186.51976 * 1 2 3 30 30 H 1.09000 * 109.47011 * 306.51111 * 1 2 3 31 31 H 1.08993 * 109.47981 * 66.51586 * 1 2 3 32 32 H 1.09004 * 109.67962 * 110.83657 * 5 4 2 33 33 H 1.09006 * 109.67686 * 350.29001 * 5 4 2 34 34 H 1.09001 * 109.51469 * 187.77086 * 6 5 4 35 35 H 1.09002 * 109.50986 * 67.62098 * 6 5 4 36 36 H 1.08998 * 109.51287 * 177.50163 * 8 7 6 37 37 H 1.09006 * 109.54953 * 57.37771 * 8 7 6 38 38 H 1.08991 * 110.36226 * 274.74421 * 14 13 11 39 39 H 1.09001 * 110.36885 * 37.06792 * 14 13 11 40 40 H 1.09004 * 111.19143 * 279.18548 * 15 14 13 41 41 H 1.08994 * 110.90564 * 155.27771 * 15 14 13 42 42 H 1.08997 * 109.47480 * 95.25450 * 19 18 16 43 43 H 1.09001 * 109.47299 * 215.25477 * 19 18 16 44 44 H 1.09001 * 109.47294 * 335.25188 * 19 18 16 45 45 H 0.97001 * 120.00470 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.87686 * 300.44110 * 28 13 11 47 47 H 1.08998 * 109.88070 * 61.45092 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4758 -2.4489 -0.1591 6 6 1.9270 -3.3911 0.9627 7 8 3.3552 -3.4503 0.9818 8 6 3.9891 -2.2005 1.2646 9 6 3.6435 -1.1974 0.1582 10 1 4.1079 -1.5084 -0.7776 11 6 4.1409 0.1726 0.5417 12 8 3.8880 0.6244 1.6384 13 7 4.8667 0.8955 -0.3340 14 6 5.2508 0.4673 -1.6915 15 6 5.4885 1.7884 -2.4691 16 6 6.1443 2.6754 -1.3780 17 1 7.2123 2.4713 -1.3018 18 7 5.9082 4.0949 -1.6529 19 6 4.5430 4.5829 -1.8637 20 6 6.9634 4.9655 -1.7128 21 1 7.9584 4.5953 -1.9113 22 6 6.7542 6.3240 -1.5184 23 7 5.6736 6.7406 -0.8932 24 14 8.0066 7.5607 -2.1440 25 1 7.5930 8.0494 -3.4839 26 1 8.0848 8.7059 -1.2018 27 1 9.3378 6.9100 -2.2437 28 6 5.4116 2.2394 -0.0918 29 1 -0.3634 -1.0211 0.1167 30 1 -0.3633 0.6114 0.8260 31 1 -0.3635 0.4095 -0.9424 32 1 1.7220 -2.8860 -1.1269 33 1 0.4000 -2.2868 -0.0920 34 1 1.5236 -4.3881 0.7852 35 1 1.5654 -3.0164 1.9203 36 1 5.0693 -2.3409 1.3043 37 1 3.6358 -1.8211 2.2235 38 1 6.1648 -0.1255 -1.6578 39 1 4.4442 -0.1034 -2.1517 40 1 4.5473 2.2200 -2.8098 41 1 6.1694 1.6303 -3.3054 42 1 4.1465 4.9703 -0.9252 43 1 4.5523 5.3776 -2.6097 44 1 3.9143 3.7639 -2.2132 45 1 5.5276 7.6899 -0.7570 46 1 4.6007 2.9342 0.1268 47 1 6.1106 2.2108 0.7441 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980441341.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:00 Heat of formation + Delta-G solvation = -81.225966 kcal Electronic energy + Delta-G solvation = -29808.685736 eV Core-core repulsion = 25799.624441 eV Total energy + Delta-G solvation = -4009.061294 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.16524 -40.38650 -39.38364 -38.70948 -36.54396 -35.96941 -33.69904 -33.00969 -31.20724 -30.80138 -29.62072 -28.56969 -28.09786 -26.20990 -24.81472 -23.88615 -23.28594 -21.47849 -20.80453 -19.72706 -18.97447 -18.63168 -18.15727 -17.78681 -17.32797 -16.83024 -16.67104 -16.44268 -16.28993 -16.01712 -15.55266 -15.35366 -15.12739 -14.85182 -14.61790 -14.57329 -14.38363 -13.98176 -13.68539 -13.40516 -13.24585 -13.17664 -13.08576 -12.91415 -12.79664 -12.58144 -12.46035 -12.42756 -12.24777 -12.10617 -12.01164 -11.82141 -11.46411 -11.39594 -10.92703 -10.72674 -10.64640 -9.74979 -9.57388 -8.88067 -7.87110 -5.35235 1.24975 1.46271 1.47672 1.54058 1.57758 1.92462 2.09317 2.49837 2.75518 3.22792 3.33398 3.47422 3.57424 3.72437 3.78884 3.80131 3.93305 3.98228 4.08062 4.20166 4.23719 4.30301 4.33395 4.42749 4.51911 4.57287 4.58914 4.60276 4.71826 4.75074 4.86653 4.89565 5.00675 5.04183 5.09428 5.17767 5.22596 5.25674 5.40464 5.57314 5.63728 5.95890 6.19556 6.26635 6.62326 7.00815 7.06874 7.23037 7.79219 8.26540 9.16614 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.025084 B = 0.003194 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.982067 B = 8764.227162 C = 9201.942817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.490 3.510 3 O -0.565 6.565 4 N -0.611 5.611 5 C 0.067 3.933 6 C 0.035 3.965 7 O -0.377 6.377 8 C 0.072 3.928 9 C 0.100 3.900 10 H 0.119 0.881 11 C 0.545 3.455 12 O -0.593 6.593 13 N -0.606 5.606 14 C 0.106 3.894 15 C -0.136 4.136 16 C 0.166 3.834 17 H 0.089 0.911 18 N -0.598 5.598 19 C 0.183 3.817 20 C -0.271 4.271 21 H 0.083 0.917 22 C -0.055 4.055 23 N -0.938 5.938 24 Si 0.974 3.026 25 H -0.285 1.285 26 H -0.299 1.299 27 H -0.261 1.261 28 C 0.109 3.891 29 H 0.122 0.878 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.146 0.854 35 H 0.054 0.946 36 H 0.122 0.878 37 H 0.048 0.952 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.057 0.943 41 H 0.106 0.894 42 H -0.010 1.010 43 H 0.018 0.982 44 H 0.028 0.972 45 H 0.248 0.752 46 H 0.019 0.981 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.341 -27.307 -2.876 29.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.281 3.719 3 O -0.443 6.443 4 N -0.349 5.349 5 C -0.053 4.053 6 C -0.041 4.041 7 O -0.295 6.295 8 C -0.006 4.006 9 C -0.007 4.007 10 H 0.137 0.863 11 C 0.335 3.665 12 O -0.475 6.475 13 N -0.340 5.340 14 C -0.016 4.016 15 C -0.175 4.175 16 C 0.058 3.942 17 H 0.107 0.893 18 N -0.319 5.319 19 C 0.038 3.962 20 C -0.401 4.401 21 H 0.100 0.900 22 C -0.250 4.250 23 N -0.584 5.584 24 Si 0.801 3.199 25 H -0.212 1.212 26 H -0.227 1.227 27 H -0.185 1.185 28 C -0.017 4.017 29 H 0.140 0.860 30 H 0.108 0.892 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.153 0.847 34 H 0.164 0.836 35 H 0.072 0.928 36 H 0.140 0.860 37 H 0.067 0.933 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.124 0.876 42 H 0.008 0.992 43 H 0.036 0.964 44 H 0.046 0.954 45 H 0.057 0.943 46 H 0.037 0.963 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.163 -26.561 -2.267 28.529 hybrid contribution 0.242 1.979 0.403 2.034 sum -9.921 -24.581 -1.863 26.573 Atomic orbital electron populations 1.21998 0.87233 1.06884 1.05948 1.21977 0.92939 0.82548 0.74460 1.90839 1.70041 1.32856 1.50554 1.48406 1.05038 1.08102 1.73320 1.23019 0.99780 0.81228 1.01251 1.23364 0.80331 1.02626 0.97821 1.87991 1.20573 1.29079 1.91882 1.22688 0.99936 0.83236 0.94743 1.21888 0.83532 0.92594 1.02719 0.86294 1.19975 0.76429 0.86569 0.83510 1.90632 1.58890 1.72848 1.25085 1.48320 1.52684 1.16750 1.16202 1.22571 1.01516 0.97109 0.80358 1.23196 1.01538 0.94263 0.98503 1.21596 0.97906 0.83828 0.90896 0.89331 1.44152 1.03352 1.03454 1.80924 1.20351 0.84768 0.94336 0.96738 1.19671 0.89977 0.88430 1.42010 0.89973 1.25882 0.99828 0.99899 0.99429 1.70332 1.30756 1.13934 1.43333 0.85152 0.79181 0.78277 0.77240 1.21220 1.22662 1.18505 1.22354 0.96080 0.83176 1.00079 0.85961 0.89214 0.87440 0.87935 0.84665 0.83621 0.92773 0.86049 0.93337 0.87950 0.89516 0.92406 0.87589 0.99213 0.96359 0.95382 0.94295 0.96257 0.94360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 10.08 71.23 0.72 -1.75 16 2 C 0.49 13.28 7.56 87.66 0.66 13.94 16 3 O -0.56 -23.27 13.47 18.55 0.25 -23.02 16 4 N -0.61 -12.69 3.02 -797.67 -2.41 -15.10 16 5 C 0.07 0.59 6.57 86.35 0.57 1.15 16 6 C 0.04 0.33 6.98 72.08 0.50 0.83 16 7 O -0.38 -6.20 10.74 -148.98 -1.60 -7.80 16 8 C 0.07 1.52 6.21 72.08 0.45 1.97 16 9 C 0.10 2.42 3.22 44.22 0.14 2.56 16 10 H 0.12 2.29 6.32 -2.39 -0.02 2.28 16 11 C 0.54 20.02 4.06 87.66 0.36 20.37 16 12 O -0.59 -27.85 15.71 18.56 0.29 -27.56 16 13 N -0.61 -22.26 3.17 -811.34 -2.57 -24.83 16 14 C 0.11 2.81 6.31 86.93 0.55 3.36 16 15 C -0.14 -4.38 6.60 32.06 0.21 -4.17 16 16 C 0.17 7.05 3.44 46.18 0.16 7.21 16 17 H 0.09 3.54 7.92 -2.39 -0.02 3.52 16 18 N -0.60 -31.55 2.93 -696.16 -2.04 -33.59 16 19 C 0.18 10.01 7.85 127.77 1.00 11.01 16 20 C -0.27 -15.28 9.58 84.03 0.80 -14.47 16 21 H 0.08 4.36 7.87 -2.91 -0.02 4.33 16 22 C -0.05 -3.19 4.94 84.86 0.42 -2.77 16 23 N -0.94 -59.08 11.10 21.65 0.24 -58.84 16 24 Si 0.97 46.23 29.60 68.60 2.03 48.26 16 25 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 26 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 27 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 28 C 0.11 4.99 6.51 86.73 0.56 5.55 16 29 H 0.12 0.70 5.24 -2.38 -0.01 0.69 16 30 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.14 0.31 5.16 -2.38 -0.01 0.29 16 34 H 0.15 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.05 1.25 7.74 -2.38 -0.02 1.23 16 38 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.09 1.91 7.13 -2.39 -0.02 1.89 16 40 H 0.06 2.11 6.06 -2.38 -0.01 2.10 16 41 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 42 H -0.01 -0.65 7.30 -2.39 -0.02 -0.67 16 43 H 0.02 1.02 7.46 -2.39 -0.02 1.00 16 44 H 0.03 1.38 6.03 -2.39 -0.01 1.36 16 45 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 46 H 0.02 1.07 7.13 -2.39 -0.02 1.06 16 47 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -90.54 363.91 2.28 -88.26 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 0.98 Total: 9.43 kcal Atomic # 6 Polarization: 37.69 SS G_CDS: 7.11 Total: 44.80 kcal Atomic # 7 Polarization: -125.58 SS G_CDS: -6.78 Total: -132.36 kcal Atomic # 8 Polarization: -57.32 SS G_CDS: -1.06 Total: -58.38 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -90.54 2.28 -88.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980441341.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.031 kcal (2) G-P(sol) polarization free energy of solvation -90.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds